Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	760,089	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	760,089	0	A	T	99.4%	759.4 / NA	324	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (159/163); minor base C (2/0); total (161/163)
Fisher's exact test for biased strand distribution p-value = 2.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	760,090	0	G	C	99.1%	736.6 / NA	324	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/3); new base C (159/159); total (161/163)
Fisher's exact test for biased strand distribution p-value = 2.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	760,091	0	C	G	99.1%	754.9 / NA	324	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (3/0); new base G (158/162); total (161/163)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 324 total aligned reads displayed.

TGCTCGGTGGCCCGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCAGCGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTAGCCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATAGCTTTAACAGCAGCAAGCTGGT‑GACGGTGTGGGCCGGCTGGAGTACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGAAGTAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGAGCCTGTTGTTATTATTCGTCGCGCTTGCTCATGCC  >  CP042583/759809‑760370

|||

  cTCGGTGGCCCGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGt                                                                                                                                                                                                                                                                                  >  1:774602/1‑289 (MQ=255)

  cTCGGTGGCCCGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGt                                                                                                                                                                                                                                                                                  >  1:633780/1‑289 (MQ=255)

  cTCGGTGGCCCGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGt                                                                                                                                                                                                                                                                                  >  1:2311145/1‑289 (MQ=255)

            cggaagggatcatGATCGGGCGCGTGCTATGGCAAGATGTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTgg                                                                                                                                                                                                                                                                       <  2:2103745/281‑1 (MQ=255)

            cGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCCGGTTGTGATTTTGTTGCTGGGCTTTACCTTTCTCTAAGCTCCCATACTGCTTCTTGTTATGT‑ATTCGTTTAACAGCTTCACGCCGGTGGCCGGtgtg                                                                                                                                                                                                                                                                        >  2:1808577/1‑289 (MQ=255)

                   catcatGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCg                                                                                                                                                                                                                                                                   >  1:2519460/1‑286 (MQ=255)

                   catcatGATCGGGCGCGTGCCATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGTCGGTAGCGATCATCATGTTGCCGCCGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGGGGGAGAACACGAATGAATAATTTACCGGTAGTTCGTTCGCCCTGCACGCTTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACCCACCAATTCTTATGGTGTTTCTCTCATCG‑TTTAACATGCCCACGCTGGT‑GAACGTGTGGGCCgttg                                                                                                                                                                                                                                                                >  2:2874189/1‑286 (MQ=255)

                    atcatGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTg                                                                                                                                                                                                                                                               >  2:460434/1‑289 (MQ=255)

                         gATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtca                                                                                                                                                                                                                                                           <  1:1208340/288‑4 (MQ=255)

                            cGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacg                                                                                                                                                                                                                                                        <  2:903542/288‑7 (MQ=255)

                             gggCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCt                                                                                                                                                                                                                                                                <  1:989003/279‑1 (MQ=255)

                             gggCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacgc                                                                                                                                                                                                                                                       >  1:96972/1‑281 (MQ=255)

                             gggCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCCGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GCCGGTGTGGGTCGGCTgggcaacgc                                                                                                                                                                                                                                                       >  2:382124/1‑281 (MQ=255)

                               gcgcGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacgc                                                                                                                                                                                                                                                       >  1:49752/1‑279 (MQ=255)

                                 gcgTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTg                                                                                                                                                                                                                                                   <  2:633780/288‑1 (MQ=255)

                                                 gTTTTTCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtca                                                                                                                                                                                                                                                           <  1:455866/264‑4 (MQ=255)

                                                      tCAATAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcga                                                                                                                                                                                                                              <  1:2737836/288‑1 (MQ=255)

                                                         aTAACCGCGACTGGCCGGTGGACTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatgac                                                                                                                                                                                                                          <  1:2869227/289‑1 (MQ=255)

                                                          tAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacgc                                                                                                                                                                                                                                                       >  1:1029692/1‑252 (MQ=255)

                                                          tAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCGACGGTCTGGTTGGGTGGGTTATTGcgcgatgac                                                                                                                                                                                                                          >  2:2673292/1‑288 (MQ=255)

                                                          tAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGTGGTATTGcgcgatgac                                                                                                                                                                                                                          >  1:2693472/1‑288 (MQ=255)

                                                          tAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatgac                                                                                                                                                                                                                          >  1:715674/1‑288 (MQ=255)

                                                          tAACCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGACCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatgac                                                                                                                                                                                                                          >  1:863769/1‑288 (MQ=255)

                                                            aCCGCGACTGGCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑Ga                                                                                                                                                                                                                                                                               >  2:3152233/1‑233 (MQ=255)

                                                                      gCCGGTGGCCTCGGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTTTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTTTGCCGTGATTAGGCGAGGTTGAGTg                                                                                                                                                                                                             >  2:3041447/1‑289 (MQ=255)

                                                                                 cggcgGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTa                                                                                                                                                                                                  <  2:2519460/287‑1 (MQ=255)

                                                                                            atcatcATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGGTGACGCGATGATGGGTGCGGTTGGGTTAAGTCTGACAAt                                                                                                                                                                                       >  1:2282670/1‑289 (MQ=255)

                                                                                              catcatGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCCGGTATGGTGAGTTATTGCGCGTTGCCGGGATGCTGGGTGCGGTTGGTTTACGTCTGACAATTg                                                                                                                                                                                     >  2:2985178/1‑289 (MQ=255)

                                                                                                        ctgctgctAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGGTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATGTCGGCCTGTgc                                                                                                                                                                           >  1:1295465/1‑289 (MQ=255)

                                                                                                         tgctgctAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGTGCCAATGCTGATGCTGGTTATCC‑TTTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCTGGCTGGTCAACGCGCTGTTATGGTGAGTCATTGCGCGTTGACGCGATGAGGCGTGCGGGTGGTTGAAGTCTGACAGTTTGGGCCTGTgcg                                                                                                                                                                          >  2:2927148/1‑289 (MQ=255)

                                                                                                         tgctgctAATTGGGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTgcg                                                                                                                                                                          <  1:1562128/289‑1 (MQ=255)

                                                                                                          gctgctAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTCTCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGTTGAGTGGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTgtgg                                                                                                                                                                         >  2:2948227/1‑289 (MQ=255)

                                                                                                             gctAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTgcggcg                                                                                                                                                                       >  1:2230322/1‑288 (MQ=255)

                                                                                                              ctAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGAc                                                                                                                                                                     >  1:1920586/1‑289 (MQ=255)

                                                                                                                     tgCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGAcggcggcg                                                                                                                                                              >  2:1629507/1‑289 (MQ=255)

                                                                                                                        cGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACgcgc                                                                                                                                                                                                                                                     >  2:119681/1‑199 (MQ=255)

                                                                                                                        cGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGt                                                                                                                                                                                                                                            <  1:1878/208‑1 (MQ=255)

                                                                                                                        cGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGt                                                                                                                                                                                                                                            >  2:1878/1‑208 (MQ=255)

                                                                                                                        cGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGgcggcggcg                                                                                                                                                           <  2:774602/289‑1 (MQ=255)

                                                                                                                        cGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGgcggcggcg                                                                                                                                                           <  1:209524/289‑1 (MQ=255)

                                                                                                                            aaTGTGGTTCCACAAACACCAGCCAAAATGCGTGGGAGAACACGGCTGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCTTTTAACAGCTCGCAGCTGGT‑GACGGTGTGGGCCTCCTGGTCAACGCGCTGGTATGGTGAGTTATTTCTCGATGACTCCTTGCTGAGTGCGGTTTGTTTAAGTCTGACAATTGCGGTCTGTGCGGCGACGGCGGCGGCGATc                                                                                                                                                        >  1:1374347/1‑288 (MQ=255)

                                                                                                                               gtgGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAGTGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatgacgcg                                                                                                                                                                                                                       >  1:143425/1‑222 (MQ=255)

                                                                                                                               gtgGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAGTGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatgacgcg                                                                                                                                                                                                                       <  2:143425/222‑1 (MQ=255)

                                                                                                                                tgGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCgg                                                                                                                                                   <  2:1264433/289‑1 (MQ=255)

                                                                                                                                  gTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacgcg                                                                                                                                                                                                                                                      <  2:1070652/188‑9 (MQ=255)

                                                                                                                                  gTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTggtcaacgcg                                                                                                                                                                                                                                                      >  1:1070652/1‑180 (MQ=255)

                                                                                                                                    tCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGGGGCGATCCTCGGAACt                                                                                                                                               >  1:51958/1‑289 (MQ=255)

                                                                                                                                     ccACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGgcggcggcg                                                                                                                                                           <  2:151525/276‑1 (MQ=255)

                                                                                                                                      cacaAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGc                                                                                                                                                                                                                                                                     >  2:535139/1‑169 (MQ=255)

                                                                                                                                          aaCACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTG‑‑GTCAACGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTgcggc                                                                                                                                       <  2:1371442/289‑1 (MQ=255)

                                                                                                                                              ccAGCAAAGAAGCGGGGGAGAAAACGATTGAATAATTGACCGTTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGcggcgg                                                                                                                                     <  2:2311145/289‑1 (MQ=255)

                                                                                                                                                aGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGGGATCCTCGGAACTATTGcggcgg                                                                                                                                     >  2:2377294/1‑287 (MQ=255)

                                                                                                                                                aGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGcggcgg                                                                                                                                     <  1:2377294/287‑1 (MQ=255)

                                                                                                                                                 gCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGcgcgatg                                                                                                                                                                                                                            >  2:1029423/1‑199 (MQ=255)

                                                                                                                                                 gCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCggtgg                                                                                                                                  >  1:2154624/1‑289 (MQ=255)

                                                                                                                                                  cAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCggtggt                                                                                                                                 >  1:1682496/1‑289 (MQ=255)

                                                                                                                                                  cAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGAGGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCggtggt                                                                                                                                 >  1:1443365/1‑289 (MQ=255)

                                                                                                                                                               gagaACACGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGc                                                                                                                                                                                 <  1:1514537/228‑1 (MQ=255)

                                                                                                                                                                    cacGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTTCCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGCTGAGTGCGGTGGGTTTAAGTCTGACAATTGCGGCCTGTGCGTCGACGGCGGCGGCGCTCCTCGGTACCATTGCCGCGTGGGTGCTGTGTCGCTTTTGCAg                                                                                                               >  2:2483419/1‑289 (MQ=255)

                                                                                                                                                                    cacGGATGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGt                                                                                                                                                                                                                                                 >  2:507607/1‑159 (MQ=255)

                                                                                                                                                                         aTGAATAATTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTTCGGCCTGTGCGGCGACGGCGGCGGCGATCCCCGGAACTATTGCGGCGGGGGTGCTGGTGCGGTTTGGTCGGTTTc                                                                                                          >  2:2180184/1‑289 (MQ=255)

                                                                                                                                                                            aataatTTACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTg                                                                                                                                           >  1:30189/1‑253 (MQ=255)

                                                                                                                                                                                  ttACCGGTAGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGatcaa                                                                                                 <  1:2571270/289‑5 (MQ=255)

                                                                                                                                                                                         tggttctttcgcccTGGCGGATTGTGATTTTGCTGTTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCtt                                                                                          <  2:2230322/278‑1 (MQ=255)

                                                                                                                                                                                          aGTTCGTTCGCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCtt                                                                                          <  1:3073089/288‑1 (MQ=255)

                                                                                                                                                                                             tcgttcgcccTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTg                                                                                        <  1:2948227/280‑1 (MQ=255)

                                                                                                                                                                                              cattcgcccTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGCGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCggt                                                                                                                                                                                                         <  2:352982/167‑1 (MQ=255)

                                                                                                                                                                                                     ccTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGGGCGCTTTTGCAGGTTTCGCGGCTCAGATGGCTTTGCCTTTATGa                                                                               >  2:718663/1‑288 (MQ=255)

                                                                                                                                                                                                        ggCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTg                                                                                        <  2:2546079/276‑1 (MQ=255)

                                                                                                                                                                                                           ggATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACcg                                                                         <  1:1629507/288‑1 (MQ=255)

                                                                                                                                                                                                              ttGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCAGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACcgccc                                                                      >  1:1153026/1‑286 (MQ=255)

                                                                                                                                                                                                                   aTTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACTCGATGATGAGTGCGGTTGGTTTACGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTCCGCTTTGGCAGGTTTCGCGGATCAAACGGCTTTGCCTTGTTGCGCACCGAGCCGCTgg                                                                >  2:2726380/1‑289 (MQ=255)

                                                                                                                                                                                                                       tgctgcTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGc                                                                                                                                                                                 <  2:1559369/172‑1 (MQ=255)

                                                                                                                                                                                                                           gctgGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTTCGGCGGTGGTGGCGGTGCGCTTTGGCAGGTTTCGCGGTTCACATGGCTTTGCTTTTATGATCCACGCGCCCCTgggtatg                                                           >  2:2820879/1‑281 (MQ=255)

                                                                                                                                                                                                                              gggCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGAt                                                     <  2:3077161/289‑1 (MQ=255)

                                                                                                                                                                                                                                     aCCTTTCTCTACGCGCCAATCCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGc                                                                                                                                                                                 <  2:2758328/158‑1 (MQ=255)

                                                                                                                                                                                                                                           ctctACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTAGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCt                                        <  2:1393138/289‑1 (MQ=255)

                                                                                                                                                                                                                                              tACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCggt                                                                                                                                                                                                         >  2:1778656/1‑125 (MQ=255)

                                                                                                                                                                                                                                              tACGCGCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCggt                                                                                                                                                                                                         <  1:1778656/125‑1 (MQ=255)

                                                                                                                                                                                                                                                cgcgCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACcgcg                                                                       >  1:1003148/1‑253 (MQ=255)

                                                                                                                                                                                                                                                cgcgCCAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTgtc                                    >  1:1304666/1‑286 (MQ=255)

                                                                                                                                                                                                                                                cgcgACAATGCTGATGCTGGATATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGGTATTGCGCGGTGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGGTGCGACGGCGGCGGCGATCCTCGGAACTCTCGCGACGGTGGTGCTTGTGCGCTTTGCCAGGTTTCTCGGAGTAAATGGCTCTTCATTGATGATCACCGCCCCGCTGTTAATGCCAGACGTCATCACGGGcctttc                                    >  2:1466972/1‑283 (MQ=255)

                                                                                                                                                                                                                                                     cAATGCTGATGCTGGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCa                                                                            >  1:347031/1‑243 (MQ=255)

                                                                                                                                                                                                                                                                 tgGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATtcgt                  <  1:2913395/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                 tgGTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATtcg                   <  1:216285/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                  ggTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGCTGTCATCACGGGCTTgtcgctgtt                              >  1:152967/1‑268 (MQ=255)

                                                                                                                                                                                                                                                                   gTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGa                                                                                                                                                                                           >  2:1135061/1‑118 (MQ=255)

                                                                                                                                                                                                                                                                   gTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGa                                                                                                                                                                                           <  1:1135061/118‑1 (MQ=255)

                                                                                                                                                                                                                                                                   gTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCtt                                                                                          <  1:583017/215‑1 (MQ=255)

                                                                                                                                                                                                                                                                   gTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGcc                                                                                      >  1:2776896/1‑219 (MQ=255)

                                                                                                                                                                                                                                                                   gTTATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGGTGTTATTATtcgtc                 >  1:1335290/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                    ttATCT‑ATTCGTTTAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGcgccg                                                                    <  1:2457836/236‑1 (MQ=255)

                                                                                                                                                                                                                                                                        tctattcgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGtcatca                                              <  1:3124744/247‑1 (MQ=255)

                                                                                                                                                                                                                                                                           attcgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCGTTGCCTTTATGATCACCGCGCCGCTGGTAATTCCAGATGTCATCACGGGCTTTCTGCTTGTGTTATTATTCGTCCCTCTTg          >  2:1333960/6‑288 (MQ=255)

                                                                                                                                                                                                                                                                            ttcgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGc                                                                                                                 >  1:2131809/5‑184 (MQ=255)

                                                                                                                                                                                                                                                                            ttcgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGGTGTTATTTTTCGTTGCGCTTGCt        >  1:1963130/5‑289 (MQ=255)

                                                                                                                                                                                                                                                                              cgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCggttggt                                                                                                                                                                                                     >  2:2059860/3‑98 (MQ=255)

                                                                                                                                                                                                                                                                              cgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCtt                                                                                          >  1:366524/3‑205 (MQ=255)

                                                                                                                                                                                                                                                                              cgtttAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTT‑GTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGcgccg                                                                    <  2:2140465/224‑1 (MQ=255)

                                                                                                                                                                                                                                                                                  tAACAGCTCGAAGCTGGT‑GACGGTGTGGGCCGGCTGGTCAACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGcc  <  1:412389/289‑1 (MQ=255)

|||

TGCTCGGTGGCCCGGACAGCATCATGATCGGGCGCGTGCTATGGCAAGAGTTTTTCAATAACCGCGACTGGCCGGTGGCCAGCGCGGTAGCGATCATCATGTTGCTGCTGCTAATTGTGCCGATAATGTGGTTCCACAAACACCAGCAAAAAAGCGTGGGAGAACACGGATGAATAATTTACCGGTAGTTCGTAGCCCCTGGCGGATTGTGATTTTGCTGCTGGGCTTTACCTTTCTCTACGCGCCAATGCTGATGCTGGTTATCT‑ATAGCTTTAACAGCAGCAAGCTGGT‑GACGGTGTGGGCCGGCTGGAGTACGCGCTGGTATGGTGAGTTATTGCGCGATGACGCGATGATGAGTGCGGTTGGTTTAAGTCTGACAATTGCGGCCTGTGCGGCGACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGAAGTAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGAGCCTGTTGTTATTATTCGTCGCGCTTGCTCATGCC  >  CP042583/759809‑760370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A