Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 764,785 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583764,7850GC99.5% 879.1 / NA 373intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (184/186);  total (184/189)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583764,7860CG99.7% 882.1 / ‑6.9 373intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (184/188);  minor base T (0/1);  total (184/189)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01
*CP042583764,7870TA99.5% 880.6 / NA 373intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (183/186);  minor base G (0/2);  total (184/189)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 373 total aligned reads displayed.

CCAGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CGCTTTTGCTCAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGGCTGGCATAGGCGGCATACAGCAGACTCAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCGCTAAGCGTCAGCAGCAGCTGGCTGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCACTACCTGCCCACGCGACAGGACGCCATTTTGCGCTCTCCCATACCGCAAAGAACATCGC  >  CP042583/764505‑765060
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                 
  aGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  2:2334141/1‑289 (MQ=255)
     tAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           <  1:1451571/286‑1 (MQ=255)
      aaaTCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCAACGGCACAGCTTTCAACGCGCCCCGACGCGTTCGCGCGGCCTAggcggc                                                                                                                                                                                                                                                                       >  2:241879/1‑289 (MQ=255)
        aTCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTCATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCAt                                                                                                                                                                                                                                                                     <  2:2182804/289‑1 (MQ=255)
        aTCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAGCTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCAt                                                                                                                                                                                                                                                                     <  1:993077/289‑1 (MQ=255)
                   cacaATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAcagcagtgac                                                                                                                                                                                                                                                          <  1:124428/289‑5 (MQ=255)
                            cgacgTAAGTGGTTACTGGGTACGGAGAGCGATGATTTTTGGTAGCAGCACTATATCAGTAACCATCATCAAACGGACAGGAGGGTTATCTTTCAGCAGCACCAGACACTGGTTACGGAGGGCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAT‑CCGATTTCGTCAGCCCCAGCGCCTGAACAGACTCCCACTGACCCACCGACACCGCGTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGGGCGAt                                                                                                                                                                                                                                                  <  2:1195709/284‑1 (MQ=255)
                            ccAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATg                                                                                                                                                                                                                                                 <  1:1578622/289‑1 (MQ=255)
                             cAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAcagcagtgacag                                                                                                                                                                                                                                                        >  2:1624780/1‑275 (MQ=255)
                               ggTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           <  2:2862983/260‑1 (MQ=255)
                               ggTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGa                                                                                                                                                                                                                                                <  1:827627/287‑1 (MQ=255)
                                    aTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  1:335269/1‑255 (MQ=255)
                                    aTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCAt                                                                                                                                                                                                                                                                     >  2:568854/1‑261 (MQ=255)
                                    aTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAcagcagtgac                                                                                                                                                                                                                                                          <  1:178255/272‑5 (MQ=255)
                                    aTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAcagcagtgac                                                                                                                                                                                                                                                          >  1:1033639/1‑268 (MQ=255)
                                          ctcgggTACGAGTAGGGAGGCCTCTTGTTTGAAGCATTCACTCATTCAAACTAAACAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTGACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGaa                                                                                                                                                                                                                                   <  2:2928934/286‑1 (MQ=255)
                                          ccTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  2:432207/1‑249 (MQ=255)
                                          ccTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAcag                                                                                                                                                                                                                                                                 <  2:605610/259‑1 (MQ=255)
                                                  cGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTa                                                                                                                                                                                                                            >  1:699705/1‑288 (MQ=255)
                                                  cGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCCCCCCGAAGCGTTTGCGAGGCACAGGCCGCCTAccacagtaa                                                                                                                                                                                                                                                           >  2:1661391/1‑249 (MQ=255)
                                                       aGCGAGGCTTTTTTTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCg                                                                                                                                                                                                                      <  1:2525914/289‑1 (MQ=255)
                                                          gATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAg                                                                                                                                                                                                                   <  1:36089/289‑1 (MQ=255)
                                                          caTGCTTTTTGTTTCAAGCATTACATCATTCACCCAAATCAAACTGACCAGCGCGGTATCTTTCCGCAGCACCGACCACTGGTTACCGAGGCCAGGCAGCGCATGCCGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGaa                                                                                                                                                                                                                    <  2:1112905/287‑1 (MQ=255)
                                                                   tgtttgCAGCCTTAAATCCTGCACCCTACGCAAACTGACCAGAGCGGTCTCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATg                                                                                                                                                                                                          <  2:393599/289‑1 (MQ=255)
                                                                               tAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACt                                                                                                                                                                                              <  1:1915588/289‑1 (MQ=255)
                                                                                      ttCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAc                                                                                                                                                                                                                                                                   <  2:105675/213‑1 (MQ=255)
                                                                                      ttCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCAt                                                                                                                                                                                                     <  1:424697/275‑1 (MQ=255)
                                                                                           acTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGaa                                                                                                                                                                                                                                   <  1:3192948/240‑1 (MQ=255)
                                                                                           acTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACg                                                                                                                                                                                  >  2:902610/1‑289 (MQ=255)
                                                                                               aTCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGTCCCGAAGCGGTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCCCAATGTCAACCTGCACTGGGaccgtctcttata                                                                                                                                                                              >  2:332949/1‑277 (MQ=255)
                                                                                               aTCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAAc                                                                                                                                                                               >  2:1374003/1‑288 (MQ=255)
                                                                                               aTCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAAc                                                                                                                                                                               >  1:1141180/1‑288 (MQ=255)
                                                                                               aTCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACT‑GTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  1:2231437/1‑195 (MQ=255)
                                                                                                tCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAAccc                                                                                                                                                                             <  1:745043/289‑1 (MQ=255)
                                                                                                       gACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGaa                                                                                                                                                                                                                                   >  2:1274225/1‑228 (MQ=255)
                                                                                                         ccAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGAt                                                                                                                                                                    >  2:1343901/1‑289 (MQ=255)
                                                                                                          cAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATa                                                                                                                                                                   <  1:3057179/289‑1 (MQ=255)
                                                                                                             cgcgGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCAt                                                                                                                                                                                                     <  1:299580/252‑1 (MQ=255)
                                                                                                                  tATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAc                                                                                                                                                                                                                                                                   >  1:2774169/1‑185 (MQ=255)
                                                                                                                  tATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATAc                                                                                                                                                                                                                                                                   <  2:2774169/185‑1 (MQ=255)
                                                                                                                  tATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCaa                                                                                                                                                                                                            <  1:1297478/240‑1 (MQ=255)
                                                                                                                  tATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCCCAATGTCCATCTGCACTGGGCTCTGCACGAACCCAAGATTGAAAGTGAAAcc                                                                                                                                                           >  2:1534146/1‑289 (MQ=255)
                                                                                                                    tCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  2:2199649/1‑175 (MQ=255)
                                                                                                                       ttCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGCTCTCAAAGTCCATCTGCACTGGGATCTTCACGAACCCAAGATTGATACGTAAGCCATcag                                                                                                                                                      >  2:1296860/1‑287 (MQ=255)
                                                                                                                              gcaCCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCAc                                                                                                                                                                                   <  1:1627609/253‑1 (MQ=255)
                                                                                                                                 ccAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATACGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTACCGTCGAAGTTCTCAATGTCCATCTGCACGGTGATCTGCACGAACCCAAGATTGTTAGTGAAg                                                                                                                                                             >  1:580618/1‑272 (MQ=255)
                                                                                                                                         tGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCTCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCt                                                                                                                                                                                                                             <  2:537299/200‑1 (MQ=255)
                                                                                                                                               ccGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCAt                                                                                                                                                                                                     <  2:187894/218‑1 (MQ=255)
                                                                                                                                                cGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAgctgcgagga                                                                                                                             >  1:946498/1‑283 (MQ=255)
                                                                                                                                                     ccAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACaa                                                                                                                                                                                                                                        <  1:2965076/177‑1 (MQ=255)
                                                                                                                                                     ccAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCg                                                                                                                                                                                                                      >  1:148748/1‑195 (MQ=255)
                                                                                                                                                      caggccgcgacggACGCCACCTCTGCGGCATCACCAGACGGAAAAAGAGAGCCGCTTTCG‑ACAGGCCCAGCGCCTGACCAGGCTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCaa                                                                                                                        <  2:2681207/276‑1 (MQ=255)
                                                                                                                                                             cgcATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAgg                                                                                                                                                                                                                                                                           >  1:1212137/1‑134 (MQ=255)
                                                                                                                                                             cgcATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCt                                                                                                                                                                                                   >  2:1414689/1‑206 (MQ=255)
                                                                                                                                                              gcATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATaa                                                                                                               >  2:1783112/1‑289 (MQ=255)
                                                                                                                                                                  gACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGc                                                                                                                                                                                                                              >  2:1506696/1‑174 (MQ=255)
                                                                                                                                                                       cacaTCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGcacc                                                                                                       >  1:1662752/1‑288 (MQ=255)
                                                                                                                                                                       cacaTCTGCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGCCGAAGTTCTCAATGTCCATCTGCACt                                                                                                                                                                                              <  1:1990670/201‑1 (MQ=255)
                                                                                                                                                                              gCGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAAAGTCGAAGTTCTCAAAGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGATGCGAGGAGCCAAAAAAGATAAACAGCACAACAAAAAt                                                                                               >  1:2602951/1‑289 (MQ=255)
                                                                                                                                                                               cGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCAt                                                                                                                                                                                                     <  1:2131494/186‑1 (MQ=255)
                                                                                                                                                                               cGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCACGATTGATAGTGACGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAAtt                                                                                              >  1:1798269/1‑289 (MQ=255)
                                                                                                                                                                               cGGCATCACCAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAAtt                                                                                              >  1:1434376/1‑289 (MQ=255)
                                                                                                                                                                                        cAGACGGAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACGGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAgg                                                                                     <  2:2289732/289‑1 (MQ=255)
                                                                                                                                                                                             ggAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACg                                                                                <  1:1534146/289‑1 (MQ=255)
                                                                                                                                                                                             ggAAAAAGATAG‑CCGATTTCGACAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACg                                                                                <  2:732645/289‑1 (MQ=255)
                                                                                                                                                                                                        agccgatttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAAc                                                                                                             >  2:3075641/13‑250 (MQ=255)
                                                                                                                                                                                                        agccgatttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAAc                                                                                                             <  1:3075641/238‑1 (MQ=255)
                                                                                                                                                                                                          ccgatttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAg                                                                                                                                                             <  2:2131804/190‑1 (MQ=255)
                                                                                                                                                                                                          ccgatttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTa                                                                     >  1:2340474/11‑288 (MQ=255)
                                                                                                                                                                                                           cgatttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTAc                                                                    <  2:3156927/279‑1 (MQ=255)
                                                                                                                                                                                                              tttcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTcagc                                                                                                                                           <  1:2196363/208‑1 (MQ=255)
                                                                                                                                                                                                                tcgacAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAgcgc                                                              <  2:699705/285‑1 (MQ=255)
                                                                                                                                                                                                                                 tGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCAcgcg                                              >  1:2174119/1‑288 (MQ=255)
                                                                                                                                                                                                                                       gACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAgctgcgaggag                                                                                                                            >  1:271930/1‑197 (MQ=255)
                                                                                                                                                                                                                                       gACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGcc                                                    >  2:51166/1‑276 (MQ=255)
                                                                                                                                                                                                                                       gACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGcc                                                    <  1:51166/276‑1 (MQ=255)
                                                                                                                                                                                                                                           ccccCTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCa                                   <  2:967299/289‑1 (MQ=255)
                                                                                                                                                                                                                                             cACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATccgaa                                                                                                                                                    >  2:2035789/1‑170 (MQ=255)
                                                                                                                                                                                                                                             cACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCAtt                                 >  2:2969080/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  aCCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAAc                                                                                                                                                                               <  1:549922/142‑1 (MQ=255)
                                                                                                                                                                                                                                                  aCCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGACTTTCTGGCAGGCCACGCCGAATGGTTACCAGCGCTGAACCTTCCCCAGCCACAGGCCCCCAttttcc                             >  2:2599656/1‑286 (MQ=255)
                                                                                                                                                                                                                                                  aCCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            >  1:2296021/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  aCCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            <  2:1218671/289‑2 (MQ=255)
                                                                                                                                                                                                                                                  aCCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGAAAAACAGCACCCCCAGAATTTCTGGCAGGCCACGCAGAATGGCTACCAGCTCTGAACCTGCCCAACCGACAGGCAGCCATTTTgc                             >  2:2522751/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   cccACGGGCAACTCGTTCAACGCGCCTGGAAACGTTTGCGTGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGTCTAACGTCGAAGGTCTCAATATCCATATGCACTGGGAGCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATCAACAGCACCACCATAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            <  2:854991/288‑2 (MQ=255)
                                                                                                                                                                                                                                                   cccACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            <  1:977360/288‑2 (MQ=255)
                                                                                                                                                                                                                                                   cccACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            <  1:630643/288‑2 (MQ=255)
                                                                                                                                                                                                                                                    ccACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCAccacca                                                                                                   <  1:888566/216‑1 (MQ=255)
                                                                                                                                                                                                                                                      aCCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTcagcag                                                                                                                                         <  1:1345723/176‑1 (MQ=255)
                                                                                                                                                                                                                                                      aCCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgccgac                         >  1:2395687/1‑284 (MQ=255)
                                                                                                                                                                                                                                                       ccGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCt                                                                                                                                                                                                   >  2:1441731/1‑117 (MQ=255)
                                                                                                                                                                                                                                                        cGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgccgactc                       >  2:1990505/1‑282 (MQ=255)
                                                                                                                                                                                                                                                        cGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgccgactc                       >  1:1083806/1‑282 (MQ=255)
                                                                                                                                                                                                                                                           cACCGCTTGCAACGCGCCCCGAAGCGTTTGCGAGGCAGAGGCGGCATACAGCAGTGACAGAGCGATGACACCGCAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACAAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCa                    <  1:448653/288‑1 (MQ=255)
                                                                                                                                                                                                                                                               gCTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACg                                                                                >  2:3035787/1‑224 (MQ=255)
                                                                                                                                                                                                                                                                cTTTCAACGCGCCCCGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            >  2:827071/1‑274 (MQ=255)
                                                                                                                                                                                                                                                                           ccccGCAGCGTTTGCGAGGCATAGGCGGCATACAGTAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAAttt                                                                                             <  2:194811/199‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ccccGAAGCGTTTGCGAGGCATAGGCGGCATACAGTAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAAttt                                                                                             >  1:194811/1‑199 (MQ=255)
                                                                                                                                                                                                                                                                           ccccGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTgcc                            <  1:1401761/264‑2 (MQ=255)
                                                                                                                                                                                                                                                                           ccccGAAGCGTTTGCGAGGCATAGGCGGCATACAGCAGTGACAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCCGAAAGCGTCAGCAGCAGCTGCGAGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTG‑CCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATcg   >  1:2885726/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                 
CCAGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTTACCGAGGCCAGGCAGCGCATGACGCCACATCTGCGGCATCACCAGACGGAAAAAGATAG‑CGCTTTTGCTCAGCCCCAGCGCCTGACCAGACTCCCACTGACCCACCGGCACCGCTTTCAACGCGCCCCGAAGCGTTTGGCTGGCATAGGCGGCATACAGCAGACTCAGAGCGATGACACCACAAAGGAACGGGCTAACGTCGAAGTTCTCAATGTCCATCTGCACTGGGATCTGCACGAACCCAAGATTGATAGTGAAGCCATCGCTAAGCGTCAGCAGCAGCTGGCTGGAGCCAAAATAGATAAACAGCACCACCAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCACTACCTGCCCACGCGACAGGACGCCATTTTGCGCTCTCCCATACCGCAAAGAACATCGC  >  CP042583/764505‑765060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A