Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	806,503	3 bp→TCA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	806,503	0	A	T	99.8%	951.5 / NA	395	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (186/208); minor base C (1/0); total (187/208)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	806,504	0	G	C	98.7%	940.3 / NA	395	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (184/206); minor base A (3/2); total (187/208)
Fisher's exact test for biased strand distribution p-value = 6.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	806,505	0	T	A	99.8%	953.8 / NA	395	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (186/208); minor base C (1/0); total (187/208)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 395 total aligned reads displayed.

CTCAACGTCCGTCTCCTCTCGCTAAGGGGAATCCGAGTCATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGAGCATTAGTTGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGATCTGTGTTGAATCTTGTCCGCTGCGGGCGCTGGATTTCGGCCCTA  >  CP042583/806227‑806770

|||

cTCAACGTCCGTCTCCTCTCGCTAAGGGGAATCCGTCACATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCAc                                                                                                                                                                                                                                                                     >  2:2339619/1‑288 (MQ=255)

 tCAACGTCCGTCTCCTCTCGCTAAGGGGAATCCGTCACATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACt                                                                                                                                                                                                                                                                    >  1:2961326/1‑288 (MQ=255)

        ccgtcTCCTCTCGCTAAGGGGAATCCGTCACATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGa                                                                                                                                                                                                                                                             >  2:2010434/1‑288 (MQ=255)

             tcctcTCGCTAAGGGGAATCCGTCACATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  1:2079751/289‑1 (MQ=255)

                    gCTAAGGGGAATCCGTCACATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACt                                                                                                                                                                                                                                                >  1:745838/1‑289 (MQ=255)

                              atccgtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTTATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGc                                                                                                                                                                                                                                       >  2:1174127/9‑288 (MQ=255)

                              atccgtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  1:3021946/264‑1 (MQ=255)

                               tccgtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGAt                                                                                                                                                                                                                                                            >  2:830966/8‑266 (MQ=255)

                               tccgtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGAt                                                                                                                                                                                                                                                            <  1:830966/259‑1 (MQ=255)

                               tccgtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGccc                                                                                                                                                                                                                                     <  2:559071/282‑1 (MQ=255)

                                  gtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAg                                                                                                                                                                                                                                  <  2:2573672/285‑1 (MQ=255)

                                  gtcacATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAg                                                                                                                                                                                                                                  <  1:231971/285‑1 (MQ=255)

                                       aTACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGt                                                                                                                                                                                                                              >  1:1591718/1‑288 (MQ=255)

                                         aCAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTACCCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCg                                                                                                                                                                                                                           <  1:1226172/289‑1 (MQ=255)

                                             aCCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATGTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGc                                                                                                                                                                                                                       >  1:1789027/1‑289 (MQ=255)

                                               cTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCAt                                                                                                                                                                                                                     <  2:750765/289‑1 (MQ=255)

                                                ttGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATa                                                                                                                                                                                                                    <  2:2668408/289‑1 (MQ=255)

                                                 tGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCg                                                                                                                                                                                                                                                                 <  1:3065992/243‑1 (MQ=255)

                                                  gTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATa                                                                                                                                                                                                                    <  2:2995716/287‑1 (MQ=255)

                                                        gTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCtt                                                                                                                                                                                                                                                     <  2:142437/248‑1 (MQ=255)

                                                        gTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCtt                                                                                                                                                                                                                                                     >  1:142437/1‑248 (MQ=255)

                                                            aaaaGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTTTACTAAAGTCTGCCCTAGCGGTGCGATGCATAAACggtaagtag                                                                                                                                                                                                        >  2:2563822/1‑281 (MQ=255)

                                                             aaaGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGa                                                                                                                                                                                                          >  1:2397731/1‑286 (MQ=255)

                                                                      aGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTtgttgt                                                                                                                                                                                              >  2:478091/1‑289 (MQ=255)

                                                                         aGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTtgtg                                                                                                                                                                                             <  1:1867303/287‑1 (MQ=255)

                                                                         aGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTtgtg                                                                                                                                                                                             <  2:690314/287‑1 (MQ=255)

                                                                          gTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGt                                                                                                                                                                                           <  2:169838/288‑1 (MQ=255)

                                                                           tAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCa                                                                                                                                                                                                                      <  2:1565351/260‑1 (MQ=255)

                                                                            aaCCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  1:921986/226‑1 (MQ=255)

                                                                            aaCCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGa                                                                                                                                                                                        >  1:2813671/1‑289 (MQ=255)

                                                                                gATGCCAACCCAGTATGGATTTTTAATTGATTCCGGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGaa                                                                                                                                                                                    <  2:7803/289‑1 (MQ=255)

                                                                                gATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGaa                                                                                                                                                                                    <  2:513114/289‑1 (MQ=255)

                                                                                   gACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTCTCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACGAAAGTCTGCCCGAGCGGTGCGATGCCTAAACGTGAATATGGTTTTGTTTTGGTGGATg                                                                                                                                                                                      >  2:2311654/1‑284 (MQ=255)

                                                                                   gACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGAt                                                                                                                                                                                 <  1:2340804/289‑1 (MQ=255)

                                                                                     cAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGAtg                                                                                                                                                                                <  1:2668718/288‑1 (MQ=255)

                                                                                        cccAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTTGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTTGATTTCATTTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGACGCATAAACGTGAAGAGGGTTTTGGTGTGGGCGAGGGAGAttttgg                                                                                                                                                                            >  2:2198449/1‑284 (MQ=255)

                                                                                        cccAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGATCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGAtgtgt                                                                                                                                                                             >  1:1196072/1‑288 (MQ=255)

                                                                                        cccAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTACAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  2:394121/214‑1 (MQ=255)

                                                                                            gTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGa                                                                                                                                                                                                          <  1:2467032/255‑1 (MQ=255)

                                                                                             tATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  1:1678160/209‑1 (MQ=255)

                                                                                             tATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  1:2439233/209‑1 (MQ=255)

                                                                                                  aTTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTg                                                                                                                                                                                                                             >  2:725278/1‑230 (MQ=255)

                                                                                                  aTTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTg                                                                                                                                                                                                                             <  1:725278/230‑1 (MQ=255)

                                                                                                  aTTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCa                                                                                                                                                                          <  1:1448565/281‑1 (MQ=255)

                                                                                                  aTTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTg                                                                                                                                                                  >  1:1074894/1‑288 (MQ=255)

                                                                                                     ttttATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGc                                                                                                                                                              >  1:506113/1‑289 (MQ=255)

                                                                                                      tttATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCt                                                                                                                                                             >  1:3136538/1‑289 (MQ=255)

                                                                                                       ttATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGAt                                                                                                                                                                                                                                                            <  1:2570267/194‑1 (MQ=255)

                                                                                                       tcaTTGCTTCCAGGCGTTGCCCCGGTAGCAAAACCTGCGCGCTGGCCGGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTa                                                                                                                                                            <  2:1382845/287‑1 (MQ=255)

                                                                                                              ttCCAGCCGTTGCACCGTTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCa                                                                                                                                                      <  2:1074894/288‑1 (MQ=255)

                                                                                                              ttCCAGCCGTTGCACCGGCTGCAAAACCTGCGAGCTGACCGGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATGTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCa                                                                                                                                                      <  2:2259642/288‑1 (MQ=255)

                                                                                                                     cGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑gg                                                                                                                                                <  1:1126125/286‑1 (MQ=255)

                                                                                                                     cGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCt                                                                                                                                              <  1:2191716/288‑1 (MQ=255)

                                                                                                                       ttGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTCCATGTAACCACTGCGAAGATCCGGCTTGTACTAAACTCTGCCCGCGCGGTCCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGTTGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTg                                                                                                                                            >  2:1792885/1‑288 (MQ=255)

                                                                                                                            ccgtgtGCAAAACCTGCGAGCTGGCCTCTAAAGACTACAAAGCTTTGACGACAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTa                                                                                                                                      <  1:359199/284‑1 (MQ=255)

                                                                                                                             cGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTg                                                                                                                                                                                                                             >  1:1555231/1‑203 (MQ=255)

                                                                                                                              ggTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGc                                                                                                                                                              <  2:2541638/264‑1 (MQ=255)

                                                                                                                              ggTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGc                                                                                                                                                              >  1:2541638/1‑264 (MQ=255)

                                                                                                                                  gCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAg                                                                                                                                                                                                                                  <  1:871271/193‑1 (MQ=255)

                                                                                                                                            cGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCt                                                                                                                                                                                                                                                      <  2:1858846/163‑1 (MQ=255)

                                                                                                                                                   gCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAg                                                                                                                                                                                                                                            <  2:896688/166‑1 (MQ=255)

                                                                                                                                                             aCTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCAc                                                                                                                                                                                                                                                                     <  2:2453986/131‑1 (MQ=255)

                                                                                                                                                             aCTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGAt                                                                                                                                                                                                                                                            >  1:531644/1‑140 (MQ=255)

                                                                                                                                                             aCTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       <  2:2427796/145‑1 (MQ=255)

                                                                                                                                                             aCTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTTCCCGTATGGCGCACCGCAATATAACGACACGAAAGGCCa                                                                                                     >  2:3129002/1‑289 (MQ=255)

                                                                                                                                                             aCTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCg                                                                                                                            >  1:447238/1‑266 (MQ=255)

                                                                                                                                                               tACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGc                                                                                                                                                                 >  1:2138182/1‑228 (MQ=255)

                                                                                                                                                                  aaaGGTTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGgcg                                                                                                                                 <  2:2690903/256‑1 (MQ=255)

                                                                                                                                                                  aaaGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCt                                                                                                                                              >  2:1897736/1‑243 (MQ=255)

                                                                                                                                                                  aaaGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCt                                                                                                                                              <  1:1897736/243‑1 (MQ=255)

                                                                                                                                                                  aaaGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCg                                                                                                                            >  1:2693723/1‑261 (MQ=255)

                                                                                                                                                                         tGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGgcg                                                                                                                                 >  2:2165391/1‑249 (MQ=255)

                                                                                                                                                                         tGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCCCCGCAATTTAACGAAAGCAAAGGCCAAATAACC‑AAAt                                                                                         >  2:2134485/1‑288 (MQ=255)

                                                                                                                                                                           aCGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGc                                                                                                                                                                                                                                                       >  2:2857977/1‑131 (MQ=255)

                                                                                                                                                                             gCCGGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCACATGACC‑AAATGCGa                                                                                     <  1:1997772/288‑1 (MQ=255)

                                                                                                                                                                                aGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGa                                                                                     >  1:3185857/1‑285 (MQ=255)

                                                                                                                                                                                aGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGa                                                                                     <  2:3185857/285‑1 (MQ=255)

                                                                                                                                                                                         cTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGc                                                                                                                                                                    >  1:1004779/1‑199 (MQ=255)

                                                                                                                                                                                              gccgcATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTa                                                                            >  1:599086/1‑280 (MQ=255)

                                                                                                                                                                                                       aTGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACCGCCATAT‑GGCTTGCCCGTATGGCGCACCg                                                                                                                            >  1:1634014/1‑224 (MQ=255)

                                                                                                                                                                                                       aTGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACCGCCATAT‑GGCTTGCCCGTATGGCGCACCg                                                                                                                            <  2:1634014/224‑1 (MQ=255)

                                                                                                                                                                                                             atGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATg                                                                                                                                                                                      <  1:1373183/162‑1 (MQ=255)

                                                                                                                                                                                                               gCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGgcg                                                                                                                                 >  2:2925338/1‑211 (MQ=255)

                                                                                                                                                                                                               gCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCa                                                                                                                          >  1:2228072/1‑218 (MQ=255)

                                                                                                                                                                                                               gCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCGATATAAcgaaacgaaa                                                                                                          >  2:1474240/1‑234 (MQ=255)

                                                                                                                                                                                                                 tGGCGGCGACTTGCAGGAAGATAACGTTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCAc                                                                                                                              <  2:2608812/212‑1 (MQ=255)

                                                                                                                                                                                                                 tGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGccc                                                                                                                                                                                                                                     >  1:2302186/1‑111 (MQ=255)

                                                                                                                                                                                                                 tGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCAc                                                                                                                              >  1:2608812/1‑212 (MQ=255)

                                                                                                                                                                                                                    gggggACTGGCAGGAAGATAACGGGGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGAt                                              <  2:3049845/284‑1 (MQ=255)

                                                                                                                                                                                                                    cggcgACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCa                                                                                                                               <  1:2837115/208‑1 (MQ=255)

                                                                                                                                                                                                                    cggcgACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGa                                               >  2:1120603/1‑287 (MQ=255)

                                                                                                                                                                                                                                   aGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCAc                                                                                                                              <  2:2795924/194‑1 (MQ=255)

                                                                                                                                                                                                                                       aaCGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCa                                                                                                                                                                          >  1:796560/1‑148 (MQ=255)

                                                                                                                                                                                                                                            tgtCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGa                                                             <  2:1514246/249‑1 (MQ=255)

                                                                                                                                                                                                                                            tgtCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGa                                                             <  2:1201772/249‑1 (MQ=255)

                                                                                                                                                                                                                                            tgtCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGa                                                             >  1:1514246/1‑249 (MQ=255)

                                                                                                                                                                                                                                            tgtCTGGCACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGATCTGTGTTGAATCTTGTCCGCTGCgg                     >  1:127881/1‑289 (MQ=255)

                                                                                                                                                                                                                                              tCTGGCACCAGAACGTGTTTGCCTACTATCAGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCa                                                                                                                                                      <  1:2913430/160‑1 (MQ=255)

                                                                                                                                                                                                                                                   cACCAGAACGTGTTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGATCTGTGTTGAATCTTGTCCGCTGCGGGCGCTgg              >  1:1719861/1‑289 (MQ=255)

                                                                                                                                                                                                                                                              gtTTGCCTACTATCTGTCGATTTCATGTAACCACTGCGAAGATCCGGCTTGTACTAAAGCTGGCCCGACGGGTCCGTGCCTTAAAGGGGAAG‑TGGGTTTGTTTGTGTCGGTTGAGATGGTTGCATTTGGTTGCGGCT‑CTGCCCTTTGGGCTGGCCGGTTTGGCCCCCCGCAATAAAACGAAAGGAAAGGCCATA‑GACCAAAATGCGATGGTTTTTATGACGGGTTTGCGGAGGGAAAAAGCCCAAACGGGTTTAAATCTTTTCTGTTGCGGGCCCGGGTTTTGGGCCCt   >  2:1278670/1‑289 (MQ=255)

|||

CTCAACGTCCGTCTCCTCTCGCTAAGGGGAATCCGAGTCATACAAACCTTGTTCAGGTTGAAAAGGTGTAAGGAGTAACCGATGACAACCCAGTATGGATTTTTTATTGATTCCAGCCGTTGCACCGGTTGCAAAACCTGCGAGCTGGCCTGTAAAGACTACAAAGATTTGACGCCAGAAGTCAGCTTCCGCCGCATTTATGAATATGCTGGCGGCGACTGGCAGGAAGATAACGGTGTCTGGCACCAGAACGTGTTTGCCTACTATCTGAGCATTAGTTGTAACCACTGCGAAGATCCGGCTTGTACTAAAGTCTGCCCGAGCGGTGCGATGCATAAACGTGAAGATGGTTTTGTTGTGGTCGATGAAGATGTGTGCA‑TTGGCTGCCGCTACTGCCATAT‑GGCTTGCCCGTATGGCGCACCGCAATATAACGAAACGAAAGGCCATATGACC‑AAATGCGATGGTTGTTATGACCGTGTTGCGGAGGGTAAAAAGCCGATCTGTGTTGAATCTTGTCCGCTGCGGGCGCTGGATTTCGGCCCTA  >  CP042583/806227‑806770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A