Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 832,889 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583832,8890AT99.4% 812.1 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (165/174);  minor base C (2/0);  total (168/174)
Fisher's exact test for biased strand distribution p-value = 2.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583832,8900GC99.7% 809.6 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (168/173);  total (168/174)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583832,8910CG100.0% 816.0 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (168/174);  total (168/174)

Only 100 of 342 total aligned reads displayed.

GGCTGGAAATACAAAGACGCCTGGATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTAGTGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTAGCCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTAGCCCTTTTGATCCTGTTGTCT  >  CP042583/832613‑833168
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
ggCTGGAAATACAAAGACGCCTGGATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCTAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGCCCGGGATGAGGAGCGCGAT‑CCCGTTTCGCAAACAGaa                                                                                                                                                                                                                                                                              >  2:2332175/1‑288 (MQ=255)
            aaaGACGCCTGGATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAAtcatca                                                                                                                                                                                                                                                                 <  1:1329838/289‑1 (MQ=255)
                 cGCCTGGATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCt                                                                                                                                                                                                                                                             <  2:91511/288‑1 (MQ=255)
                      ggATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATg                                                                                                                                                                                                                                                               <  2:2904087/281‑1 (MQ=255)
                            aGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGACGCAGAAATCATCAAGGTGGATAACAGTgc                                                                                                                                                                                                                                                 >  2:1362666/1‑289 (MQ=255)
                            aGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGGTTATTTACTGCCGGAAAGGTGAGGGTGATTGAACGGCGCAACTTGCAGCGCGGTTATGAGTTAACCCACCGTTTCATGCCTGACTGGGATGTGGAGGGGGGTCCTCTTTCCGAAAACA‑AGGCAGACATCATCATGCTGGaataaatgtg                                                                                                                                                                                                                                                 >  2:939727/1‑280 (MQ=255)
                                aCATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGcgcg                                                                                                                                                                                                                                              <  1:1414571/288‑1 (MQ=255)
                                aCATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGcgcg                                                                                                                                                                                                                                              <  1:16804/288‑1 (MQ=255)
                                    gAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGcc                                                                                                                                                                                                                                         <  1:1180330/289‑1 (MQ=255)
                                     aGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGCTGATGAGCGCGAT‑CTCGTTTCGCAACCAGAAGCAGAAATCATCATGCTGGATAACCGTGCGAGtca                                                                                                                                                                                                                                           >  2:2137379/1‑284 (MQ=255)
                                        cGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTTCAGTCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTggg                                                                                                                                                                                                                                     >  2:519558/1‑289 (MQ=255)
                                                              gCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTgcgc                                                                                                                                                                                                                                               >  2:575252/1‑257 (MQ=255)
                                                              gCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGcgcg                                                                                                                                                                                                                                              <  1:1755767/258‑1 (MQ=255)
                                                              gCATATTCATGATAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGACTATTCAGCGAACAGtgcttg                                                                                                                                                                                                               >  2:1093486/1‑285 (MQ=255)
                                                                         aTAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATg                                                                                                                                                                                                                                                               <  2:2455727/230‑1 (MQ=255)
                                                                         aTAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAg                                                                                                                                                                                                                                                    >  1:2820104/1‑241 (MQ=255)
                                                                         aTAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAg                                                                                                                                                                                                                                                    <  2:2820104/241‑1 (MQ=255)
                                                                          tAAGGGGCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTa                                                                                                                                                                                                    <  2:3167621/288‑1 (MQ=255)
                                                                             ggggCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGcc                                                                                                                                                                                                                                         <  2:961947/248‑1 (MQ=255)
                                                                             ggggCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCcg                                                                                                                                                                                                                            <  1:3096801/261‑1 (MQ=255)
                                                                              gggCCGGTACGTTCAGCCGATTTTGAGCATACTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGATTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGAGCGTTTATGATTTAACCCACCGTGTCATGCCTGAATGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATAATCATGATGGATAACAGTGCGCGTAGCCTGGGAATATACCGCGAACAGCGGCTGGCAGATTACTATCg                                                                                                                                                                                                 >  1:978979/1‑287 (MQ=255)
                                                                                gCCGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTg                                                                                                                                                                                             >  1:2649028/1‑289 (MQ=255)
                                                                                  cGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATg                                                                                                                                                                                                                                                               <  2:2024752/221‑1 (MQ=255)
                                                                                  cGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATg                                                                                                                                                                                                                                                               >  1:2024752/1‑221 (MQ=255)
                                                                                  cGGTACGTTCAGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGaa                                                                                                                                                                                           <  2:1269649/289‑1 (MQ=255)
                                                                                     tacgttcagCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAg                                                                                                                                                                                                                                                                                >  1:889025/9‑201 (MQ=255)
                                                                                     tacgttcagCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAatca                                                                                                                                                                                                                                                                    <  2:1727174/205‑1 (MQ=255)
                                                                                          tcagCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAAtcatca                                                                                                                                                                                                                                                                 >  1:1449108/4‑211 (MQ=255)
                                                                                              ccGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGCAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCAGCGAACAGTGGCTGGCCGAGTACTATCGCCTGAAACGTCAGGCaat                                                                                                                                                                               >  2:1175138/1‑287 (MQ=255)
                                                                                                   tttGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCATAAAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGt                                                                                                                                                                                                                                                   >  1:2723910/1‑217 (MQ=255)
                                                                                                      gggCATCCTCGTAAGGGGGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGTCATCTGGAAGGTTTATTTACTGCCGGAAAGTTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGt                                                                                                                                                                       <  2:1410465/287‑1 (MQ=255)
                                                                                                          aTCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACGGTGGCTGGCAGATTACTATGGGCTGAAACGTCCGGCACTGGCGGCGTgggc                                                                                                                                                                   >  2:447846/1‑287 (MQ=255)
                                                                                                             cTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGCAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGcc                                                                                                                                                                                                                                         <  1:1321542/216‑1 (MQ=255)
                                                                                                               cGTAAAGGTGCAAGCGGCTGGTGGGGATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAACTCGTCATGCTGGATAACAGTGcgcg                                                                                                                                                                                                                                              <  1:2281135/209‑1 (MQ=255)
                                                                                                                gTAAAGGGGCAAGCGGCTGGTGGGGATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGc                                                                                                                                                             <  1:447846/289‑1 (MQ=255)
                                                                                                                      gTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTAGATAACAg                                                                                                                                                                                                                                                    >  2:1549150/1‑196 (MQ=255)
                                                                                                                       tGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGt                                                                                                                                                                                                                                             <  1:502124/202‑1 (MQ=255)
                                                                                                                       tGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGcc                                                                                                                                                                                                                                         <  2:1120951/206‑1 (MQ=255)
                                                                                                                        gCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCa                                                                                                                                                                                                            <  1:2439420/234‑1 (MQ=255)
                                                                                                                         cAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAt                                                                                                                                                                                                                                                         <  1:1852255/188‑1 (MQ=255)
                                                                                                                         cAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTCCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATAGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGa                                                                                                                                                    >  2:2254341/1‑289 (MQ=255)
                                                                                                                          aaGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGa                                                                                                                                                    >  1:595806/1‑288 (MQ=255)
                                                                                                                                 tggtggGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAAcagcag                                                                                                                                             <  1:3039251/288‑1 (MQ=255)
                                                                                                                                 tggtggGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAAcagcag                                                                                                                                             <  1:1093486/288‑1 (MQ=255)
                                                                                                                                 tggtggAGATGGAAGCCGCAT‑GAACGGCATCTGGGAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCAGGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAAcagcag                                                                                                                                             <  2:1194730/288‑1 (MQ=255)
                                                                                                                                 tgggggGAATGGAAGACGCAT‑AAACGGCAGATGGAAGGTTTATGTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTGACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAAcagcag                                                                                                                                             <  2:1700661/288‑1 (MQ=255)
                                                                                                                                   gtggGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAgcagca                                                                                                                                           <  2:1840496/288‑1 (MQ=255)
                                                                                                                                   gtggGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCaa                                                                                                                                          >  1:1960184/1‑289 (MQ=255)
                                                                                                                                      ggAATGGAAGCGGCAT‑AAAAGGCAGCTGGAAGGGTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGGGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAAt                                                                                                                                        <  2:3099336/288‑1 (MQ=255)
                                                                                                                                      ggAATGGAAGCCGCAT‑AAGCGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGGGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAAt                                                                                                                                        <  2:2971564/288‑1 (MQ=255)
                                                                                                                                        aaTGGAGGCCGCAT‑AAACGGAAGCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCa                                                                                                                                      <  2:2654571/288‑1 (MQ=255)
                                                                                                                                        aaTGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCa                                                                                                                                      <  2:3059118/288‑1 (MQ=255)
                                                                                                                                         aTGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTAt                                                                                                                                                                                                   >  1:1582744/1‑226 (MQ=255)
                                                                                                                                              aGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCtgt                                                                                                                               >  1:2499010/1‑289 (MQ=255)
                                                                                                                                                 cGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGG‑AAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCa                                                                                                                            <  1:715825/288‑1 (MQ=255)
                                                                                                                                                  gCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCAt                                                                                                                           >  2:711767/1‑289 (MQ=255)
                                                                                                                                                                cTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTT‑CAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTggg                                                                                                             <  1:1250833/289‑1 (MQ=255)
                                                                                                                                                                          tatttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTg                                                                                                    >  1:41801/1‑289 (MQ=255)
                                                                                                                                                                             ttaCTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCt                                                                                                 <  2:883716/289‑1 (MQ=255)
                                                                                                                                                                                cTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCa                                                                                              <  2:1323228/289‑1 (MQ=255)
                                                                                                                                                                                 tGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCTGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGGGAGGGCTGGACAGCAGCAAATCATTTCAGTGCATGTGGAAAAATTGGGAAAACTTTGGGTGTat                                                                                             >  1:2774216/1‑289 (MQ=255)
                                                                                                                                                                                 tGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGAGAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATTGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAGACGCAGCCAATCATTTCTGTGCATTGTTAAAAATTGGTCAATCTTGTGCCGCat                                                                                             >  2:1794590/1‑289 (MQ=255)
                                                                                                                                                                                           gtgatggtgatTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGc                                                                                                                                                             >  1:55587/1‑215 (MQ=255)
                                                                                                                                                                                             gatggtgatTGAACGGCGCAACTTCCAGCGCGTTTATGATTGAACCCACCGTGTCATGCCTGACTGGGATGATCAGCGCGAT‑CTCGTTTCGCAAACAGGAGCAGACATCCTCATGCTGGATAACAGTGCGCGTAGCATGGGAATATTCCGCGAACAGTTGCTGGCAGATTCCTATCGTCTGCAACGTCCGTCACCGGCTGCGCGGCGCCAAGCGAGGGATGAACAGCAGCAAAGCAGTACCGTGCCTGTTGTAAAATTGTGCACGCTTTTGCTGCATGTTGTTGtgct                                                                                  >  2:493751/1‑288 (MQ=255)
                                                                                                                                                                                               tggtgatTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTtgctgc                                                                                <  1:2202757/288‑1 (MQ=255)
                                                                                                                                                                                                    atTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCCAACTTTGGCTGCATGAGTATTTGCTGCCGCTa                                                                           >  2:1464363/1‑288 (MQ=255)
                                                                                                                                                                                                     ttGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTAc                                                                          >  1:2981759/1‑288 (MQ=255)
                                                                                                                                                                                                           ggCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGc                                                                                                                                                             >  2:1968330/1‑199 (MQ=255)
                                                                                                                                                                                                            gcgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTgg                                                                                                   >  1:2959039/1‑256 (MQ=255)
                                                                                                                                                                                                            gcgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTcgagcga                                                                  >  1:1713314/1‑289 (MQ=255)
                                                                                                                                                                                                            gcgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTcgagcga                                                                  >  2:2558139/1‑289 (MQ=255)
                                                                                                                                                                                                             cgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGaa                                                                                                                                                                                                                        >  1:2348982/1‑138 (MQ=255)
                                                                                                                                                                                                             cgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGtggctgg                                                                                                                                                                                                              >  1:2117505/1‑148 (MQ=255)
                                                                                                                                                                                                             cgcAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGtggctgg                                                                                                                                                                                                              <  2:2117505/148‑1 (MQ=255)
                                                                                                                                                                                                                  tgctctgcgcGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCt                                                             <  1:1286154/282‑1 (MQ=255)
                                                                                                                                                                                                                       aGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCgg                                                       >  1:18919/1‑289 (MQ=255)
                                                                                                                                                                                                                            gTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGc                                                  <  1:1611503/289‑1 (MQ=255)
                                                                                                                                                                                                                              ttATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCt                                                 >  1:147954/1‑288 (MQ=255)
                                                                                                                                                                                                                               tataATTTAACCCTCCGGGTAAGGCCTGACTGGGATGATGGGCGCGCT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCTTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCGCTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCa                                               <  2:2851882/289‑1 (MQ=255)
                                                                                                                                                                                                                               tATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCa                                               <  1:1002934/289‑1 (MQ=255)
                                                                                                                                                                                                                                  gATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTg                                            <  1:2904379/289‑1 (MQ=255)
                                                                                                                                                                                                                                      tAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGtggctggc                                                                                                                                                                                                             >  2:372770/1‑124 (MQ=255)
                                                                                                                                                                                                                                      tAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGtggctggc                                                                                                                                                                                                             <  1:372770/124‑1 (MQ=255)
                                                                                                                                                                                                                                        aCCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTg                                                                                                                                   >  2:2953584/1‑196 (MQ=255)
                                                                                                                                                                                                                                        aCCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGTTGTGCATGTTGAAAAATTGGGGAATCTTTGTCTGCATGATGATTTGCTGCCGCTATCCGGGTGGGCGCTCGCCGGGAAGCCACCTGCAACg                                       >  2:1721663/1‑288 (MQ=255)
                                                                                                                                                                                                                                         cccACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGca                                     <  1:2183584/289‑1 (MQ=255)
                                                                                                                                                                                                                                              cGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACt                                                                         <  2:691062/248‑1 (MQ=255)
                                                                                                                                                                                                                                              cGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACt                                                                         >  1:691062/1‑248 (MQ=255)
                                                                                                                                                                                                                                                  tCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGCTGATTTGCTGCCGCTACTCGAGCGAGTGCTGTCCGGAAAGCTCACCGCAACGCACACCGCCGt                            >  2:2701913/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       ccTGACTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACtt                        >  1:3161559/1‑288 (MQ=255)
                                                                                                                                                                                                                                                           aCTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGGATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGagcgagcg                                                               <  2:2748656/245‑1 (MQ=255)
                                                                                                                                                                                                                                                           aCTGGGATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAAcagcag                                                                                                                                             >  2:1899676/1‑167 (MQ=255)
                                                                                                                                                                                                                                                               ggATGATGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGagcgagcg                                                               >  1:619921/1‑241 (MQ=255)
                                                                                                                                                                                                                                                                gatgatGAGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTg              >  1:1899735/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  tgatgaGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGa             <  1:519558/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                     tgggcgcGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCa                                               <  2:603134/248‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gaGCGCGAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCtg        <  1:2886604/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         cgcgAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCt                                                 >  2:129169/1‑245 (MQ=255)
                                                                                                                                                                                                                                                                         cgcgAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCGGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCCCACTGCAACGCCCAGCGCGGTACTTTCGCCTTTTTATCCtgtcg     >  2:3019294/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                            gAT‑CTCGTTTCGCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTTCGCCTTTTGATCCTGTTGTCt  <  1:112263/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                     
GGCTGGAAATACAAAGACGCCTGGATGCAGGAACATGAGGCGGAAATTGCACAGTTAATTCAGCATATTCATGATAAGGGGCCGGTACGTAGTGCCGATTTTGAGCATCCTCGTAAAGGTGCAAGCGGCTGGTGGGAATGGAAGCCGCAT‑AAACGGCATCTGGAAGGTTTATTTACTGCCGGAAAGGTGATGGTGATTGAACGGCGCAACTTCCAGCGCGTTTATGATTTAACCCACCGTGTCATGCCTGACTGGGATGATGAGCGCGAT‑CTCGTTAGCCAAACAGAAGCAGAAATCATCATGCTGGATAACAGTGCGCGTAGCCTGGGAATATTCCGCGAACAGTGGCTGGCAGATTACTATCGGCTGAAACGTCCGGCACTGGCGGCGTGGCGCGAAGCGAGGGCTGAACAGCAGCAAATCATTGCTGTGCATGTTGAAAAATTGGGCAATCTTTGGCTGCATGATGATTTGCTGCCGCTACTCGAGCGAGCGCTGGCCGGAAAGCTCACTGCAACGCACAGCGCGGTACTTAGCCCTTTTGATCCTGTTGTCT  >  CP042583/832613‑833168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A