Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,801,762 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,801,7620GC99.2% 577.2 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (126/119);  total (126/121)
Fisher's exact test for biased strand distribution p-value = 2.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,801,7630CG99.6% 576.7 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (126/119);  total (126/121)
Fisher's exact test for biased strand distribution p-value = 4.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01
*CP0425831,801,7640TA98.8% 576.7 / NA 247intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  major base A (126/117);  minor base C (0/3);  total (126/121)
Fisher's exact test for biased strand distribution p-value = 1.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 247 total aligned reads displayed.

TAATTTGCGCCCTCGCTACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACGCT‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGGCTGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTA  >  CP042583/1801490‑1802038
                                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                                   
     tGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGa                                                                                                                                                                                                                                                                 <  2:717489/289‑1 (MQ=255)
     tGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CATAATGTTGATGATGCg                                                                                                                                                                                                                                                                  >  2:1422812/1‑288 (MQ=255)
       cgcCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGAATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGAc                                                                                                                                                                                                                                                                >  1:2680893/1‑288 (MQ=255)
            tccgaaCAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTtga                                                                                                                                                                                                                                                                         >  1:1220752/6‑274 (MQ=255)
              tgtagcagagaccgccacccGGCTGGCAATCTCATGCGTTGCTCCAGAACGCCGCAAGGGAATCGAAGGATCCGCGTCGGGCTTCACCGCGCTGTCTTCCATGCCCTTCATTGTCGTGGGGTTCACCCCAGGCGCGACTGCGTTCACCAACATCTGATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTGG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCgccctgc                                                                                                                                                                                                                                                        <  2:3192119/275‑1 (MQ=255)
               gaaCAAACCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAATACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCgccctgcc                                                                                                                                                                                                                                                       <  1:2853720/287‑1 (MQ=255)
                        cacaCCACCAGGCTGGCAATCTCATGCGTTGCGCCAAACCGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCa                                                                                                                                                                                                                                              <  2:1130359/289‑1 (MQ=255)
                                     tGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCCACCGCCCTGCCCTTGTTTCACCTTCTGACGat                                                                                                                                                                                                                                  >  1:2003176/1‑287 (MQ=255)
                                        cAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGc                                                                                                                                                                                                                              >  1:532101/1‑289 (MQ=255)
                                                tGCGTTGCGCCAAACCGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcg                                                                                                                                                                                                                      <  2:1156727/289‑3 (MQ=255)
                                                     tGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCGGCGTCGGGCTTCACGTCGCGGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  1:2040312/288‑7 (MQ=255)
                                                     tGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  2:343940/288‑7 (MQ=255)
                                                     tGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  1:1970121/288‑7 (MQ=255)
                                                     ggcgcCAAAACGCTGCAAGGAGATGTAAGGCTCCGCGTCGTGCTTAACGTCGGTGTCGTCCATGCCATTCATTGGCGTGGCGAGTGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCGGCTCCAGCGCCATCGCTTTGGTTAACCCAACGGGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTGCCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCGCCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  2:173758/287‑7 (MQ=255)
                                                       cgcCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATaa                                                                                                                                                                                                               >  1:306402/1‑289 (MQ=255)
                                                        gcCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATaa                                                                                                                                                                                                               <  1:145915/288‑1 (MQ=255)
                                                         ccAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGa                                                                                                                                                                                                             >  1:1752167/1‑289 (MQ=255)
                                                                 ccgcAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCa                                                                                                                                                                                                     >  1:1877262/1‑289 (MQ=255)
                                                                    cAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCg                                                                                                                                                                                                  >  1:1809217/1‑289 (MQ=255)
                                                                                  gttCCGCGTCGGGCTTCACTTCGCTGTCATACATGCCGTTCATTTGCGTGGCGTTCCCCCCAGGCGCGACTGCGTTCACCACAATCTGACGCCTGCCCAGCTCCAGCGCAATCGCTTTGGTTAACCCACCGCGGGGGTGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTAGGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTaa                                                                                                                                                                                     <  2:3047181/286‑1 (MQ=255)
                                                                                   cTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTaaaa                                                                                                                                                                                   >  2:1696018/1‑289 (MQ=255)
                                                                                             ggCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCgccctgccc                                                                                                                                                                                                                                                      >  1:1130794/1‑212 (MQ=255)
                                                                                                ttCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACt                                                                                                                                                                      <  1:3012925/289‑1 (MQ=255)
                                                                                                               tCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCata                                                                                                                                                        >  1:320948/1‑288 (MQ=255)
                                                                                                                    gCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGa                                                                                                                                                                                                             >  1:2912895/1‑230 (MQ=255)
                                                                                                                    gCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGAGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATAAACGGTAAAAATCTTACCCCACTCATCCAACGCCATATCAAGa                                                                                                                                                  >  2:2097452/1‑289 (MQ=255)
                                                                                                                        ttcattGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACg                                                                                                                                              <  2:1877262/289‑1 (MQ=255)
                                                                                                                        ttcattGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACg                                                                                                                                              >  1:787636/1‑289 (MQ=255)
                                                                                                                           attGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCa                                                                                                                                                                                                        <  1:2339311/228‑1 (MQ=255)
                                                                                                                             tggcgtggcgCTCGCCCCAGGCGCGACTGCGTCCACCAACATCTTATTCCTGACCAGTTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTTATGTTGATGATGCGACCTCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCt                                                                                                                                         <  1:2939457/289‑1 (MQ=255)
                                                                                                                                  tggcgATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  >  2:2268746/1‑205 (MQ=255)
                                                                                                                                  tggcgATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  1:2268746/211‑7 (MQ=255)
                                                                                                                                  tggcgATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTTCGCCACTCATCAAAAGCCATAACAAGCAACGGAGCTTTgg                                                                                                                                     >  2:2944895/1‑288 (MQ=255)
                                                                                                                                  tggcgATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTgg                                                                                                                                     >  1:1439232/1‑288 (MQ=255)
                                                                                                                                  tggcgATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTgg                                                                                                                                     >  2:2677877/1‑288 (MQ=255)
                                                                                                                                         cGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCCATTTGCGAGCATAAGAATGCACCATCGACATCACCGGCAAAAATCTTGCGCCACTCATCAAAATCCACATCAAGAAACGGCGCTTTgtgcgttgg                                                                                                                              >  2:1473932/1‑280 (MQ=255)
                                                                                                                                             ccAGGCGCTGCTGCGTTCACCAAAATCTGATGCCTGACCAGATCAAGCGCCATCGTCTTGGTTAACCCACCGAGCGGATGTTTAG‑CGGCTGGGTAGGCGCGGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTGGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGGGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCg                                                                                                                         <  2:532101/289‑1 (MQ=255)
                                                                                                                                                    cgACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCattat                                                                                                                   >  2:641306/1‑288 (MQ=255)
                                                                                                                                                     gACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGGAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGa                                                                                                                                                  >  1:37639/1‑256 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCg                                                                                                                                                                                                                                                              >  1:2985293/1‑147 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCa                                                                                                                                                                        >  2:1229192/1‑233 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCa                                                                                                                                                                        <  1:1229192/233‑1 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTc                                                                                                                 >  1:2945792/1‑288 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCT‑‑TGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAAc                                                                                                                                               >  2:1117710/1‑256 (MQ=255)
                                                                                                                                                      aCTGCGTTCACCAAAATCT‑‑TGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAAc                                                                                                                                               <  1:1117710/256‑1 (MQ=255)
                                                                                                                                                       ctcggTTCACAATGATCTTGAGCCAGACAAGCTCCAGCGACATCGCTTTTGTTACGCCACAGAGGGCATGTTTAG‑GGTGTGGGTAGGCGCTGGCATCCGGCGGCGGGGTAGGTTCATGTACCGA‑CGTAATGTTGATGATGCGGCCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCAc                                                                                                               <  2:1752167/285‑1 (MQ=255)
                                                                                                                                                       cTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCAc                                                                                                               <  1:1696018/289‑1 (MQ=255)
                                                                                                                                                                         tATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGccc                                                                                             <  1:3149636/289‑1 (MQ=255)
                                                                                                                                                                           tGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCGACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGTCACTTTGGTCATTGCACCCGCATTATTCAACAGCACCACAATGCACCCCa                                                                                           >  2:1258276/1‑289 (MQ=255)
                                                                                                                                                                           tGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGcccc                                                                                            >  2:2408356/1‑288 (MQ=255)
                                                                                                                                                                                 aCCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTc                                                                                                                 >  2:246783/1‑261 (MQ=255)
                                                                                                                                                                                 aCCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTc                                                                                                                 <  1:246783/261‑1 (MQ=255)
                                                                                                                                                                                  ccAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCAt                                                                                                                                 <  1:2359563/244‑1 (MQ=255)
                                                                                                                                                                                    cgaccaggcgcCATAGCTTTGGTTAACCCACCGGGCGTATGTTTGG‑GGGCGGTGTGGGCGCTGGCATCCGGCAGCGGCGTATGTTCAGGTACCGA‑CGTAATGTTGATGATGCGCCCGCCCTGCCCTTGTTTCACCATCTGACGAGCAGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGaa                                                                                  <  2:2604339/282‑1 (MQ=255)
                                                                                                                                                                                      cTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCgcc                                                                                                                                                                                                                                                            <  2:2192759/117‑1 (MQ=255)
                                                                                                                                                                                      cTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCgcc                                                                                                                                                                                                                                                            >  1:2192759/1‑117 (MQ=255)
                                                                                                                                                                                      cTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGc                                                                                                                                                            >  2:2015020/1‑213 (MQ=255)
                                                                                                                                                                                      cTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATg                                                                                >  1:399626/1‑289 (MQ=255)
                                                                                                                                                                                      cTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCCGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATg                                                                                                  <  1:1208922/271‑1 (MQ=255)
                                                                                                                                                                                       tCCGGCGCCAGCGCTTTGGTTAACCCACCGGGCGAATGTGTAG‑CGGCTGTGTAGGGGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGaa                                                                                  <  2:3068363/286‑1 (MQ=255)
                                                                                                                                                                                       tCCAGCAGCAGCGGTGTGGTTAACCCGCCGAGCGGATGTTTAG‑CGGCTGTGTAGGCACTGGCCTCCGGCAGCGGCGTATGATCATGTACCGA‑CGTAATGTTGAGGATGCGACCGCCCTGCCCTGGTTTCACCATCTGACGAGCCGCAATTTGCGAGCAGAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAACCGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGaa                                                                                  <  2:2030867/286‑1 (MQ=255)
                                                                                                                                                                                         aacctcaaTCGCTTTGTTTACCCAACCGAGCGCAT‑TTTAGACGGCGGTGTAGGCGCTGGCATCCGGCAGCAGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGt                                                                             <  2:1289610/282‑1 (MQ=255)
                                                                                                                                                                                                aTCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgcgagca                                                                                                                                                                                                                  <  2:1209287/149‑7 (MQ=255)
                                                                                                                                                                                                 tCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAg                                                                     <  1:3117177/289‑1 (MQ=255)
                                                                                                                                                                                                     tttGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGcc                                                                 <  2:231750/289‑1 (MQ=255)
                                                                                                                                                                                                          tcaccccACCGCGCGCATGTTTAG‑CGCCTGTGTAGGCGCTGGCATCCGGATGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATTCGCCCGCCCTGCCCTTGTTTCACCATCTAACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGc                                                            <  2:411883/285‑1 (MQ=255)
                                                                                                                                                                                                           tAACCCACTGAGCGCAGTTTTGG‑CGGCTGGGTAGGCGCTGGCAGCGGGCAGCGGCGTATGTTAATGTACCGA‑CGTAATGTTGGTGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                           <  2:154025/289‑1 (MQ=255)
                                                                                                                                                                                                           tAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                           <  1:2650385/289‑1 (MQ=255)
                                                                                                                                                                                                             aCCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGccc                                                          >  2:3167536/1‑288 (MQ=255)
                                                                                                                                                                                                                       cgcATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGcac                                                                                                         >  2:2986295/1‑231 (MQ=255)
                                                                                                                                                                                                                        gcATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGa                                               <  1:611205/288‑1 (MQ=255)
                                                                                                                                                                                                                                     gCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGa                                                                                   <  2:1034480/240‑1 (MQ=255)
                                                                                                                                                                                                                                     gCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGa                                                                                   >  1:1034480/1‑240 (MQ=255)
                                                                                                                                                                                                                                       tgtgTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGC‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                           <  2:135546/262‑1 (MQ=255)
                                                                                                                                                                                                                                       tgtgTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTgc                                                                                                                                                                                                                       >  1:757052/1‑105 (MQ=255)
                                                                                                                                                                                                                                       tgtgTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCAc                                                                                                                            <  1:677406/197‑1 (MQ=255)
                                                                                                                                                                                                                                       tgtgTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                           >  1:135546/1‑262 (MQ=255)
                                                                                                                                                                                                                                        gtgtAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCat                                                                                                                      >  1:3045196/1‑202 (MQ=255)
                                                                                                                                                                                                                                        gtgtAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGc                                >  2:623759/1‑288 (MQ=255)
                                                                                                                                                                                                                                         tgtAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCa                                  <  1:76476/285‑1 (MQ=255)
                                                                                                                                                                                                                                            ggcggcgtgCATACGGCGTCGGCGTATTTTCATGTACCGC‑CGTAGTGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAGCGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCa                            <  2:2835349/280‑1 (MQ=255)
                                                                                                                                                                                                                                               cgcTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACg                          <  1:2097452/287‑1 (MQ=255)
                                                                                                                                                                                                                                                gcgggCATCCGGCGGCGTCGTATGTTCATGTA‑GCTACGTAATGTTGATGATGCGACCGCCCTGCCCTTTTTTCACCATCTGACGAGCCGCAATTTGCGAGCATGAGAATGCACCATTGACATCAACGGTAAAAATCGTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCTCATCAATGCGCCCCAGCCGTTGAATGAGTTTCCCCATCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAt                        <  2:1170642/285‑1 (MQ=255)
                                                                                                                                                                                                                                                gcTGGCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGaa                                                                                  >  1:164613/1‑230 (MQ=255)
                                                                                                                                                                                                                                                  tGGCACCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAtctc                     <  1:1377025/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGTGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTcc                    >  1:2895578/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGc                                                                                                                                                            <  2:1903596/153‑1 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGc                                                                                                                                                            >  1:1903596/1‑153 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCGCCAGCCGTTGACTGAGTTTCCCCCGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCCCGAtctc                     >  1:1170642/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGcc                                                           >  2:2954506/1‑250 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAtctc                     >  1:900897/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGAtctc                     >  1:340241/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   ggCATCCGGCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTACAGCCCCCGTGCCACTTCTGGTAGATTGCCGAACTCCAGCGTCCCGAtcct                     >  2:76476/1‑286 (MQ=255)
                                                                                                                                                                                                                                                        acgtgggatgcggttGTTCATGAACCGA‑CGTAATGTGGATGATGCGCCCGCCCTGCCGTTGTTTCCCAATCGAACGAACAGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTACTCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACg               <  2:2357676/275‑1 (MQ=255)
                                                                                                                                                                                                                                                          ggCAGCGGCGTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACg                          >  2:3035885/1‑276 (MQ=255)
                                                                                                                                                                                                                                                              gcggcgTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTg                                                                                                                               >  1:2121785/1‑171 (MQ=255)
                                                                                                                                                                                                                                                              gcggcgTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTg                                                                                                                               <  2:2121785/171‑1 (MQ=255)
                                                                                                                                                                                                                                                              gcggcgTATGTTCATATACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCAc                                                                                                               <  2:359873/187‑1 (MQ=255)
                                                                                                                                                                                                                                                                ggcgTATGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCg        <  1:2542537/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                     aTGTTCATGTACCGA‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGCGAGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTa  <  1:439258/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 |||                                                                                                                                                                                                                                                                                   
TAATTTGCGCCCTCGCTACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAG‑CGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTCATGTACGCT‑CGTAATGTTGATGATGCGACCGCCCTGCCCTTGTTTCACCATCTGACGAGCCGCAATTTGGCTGCATAAGAATGCACCATCGACATCAACGGTAAAAATCTTGCGCCACTCATCAAAAGCCATATCAAGAAACGGCGCTTTGGTCATTGCACCCGCATTATTCACCAGCACATCAATGCGCCCCAGCCGTTGAATGAGTTTCTCCAGCGCCAGTGCCCCTTCTGGTAGATTGCCGAGATCCAGCTGCACGATCTCCGCACGTACGCCGTGGCTA  >  CP042583/1801490‑1802038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A