Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,817,530 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,817,5300GC99.6% 610.8 / NA 260intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (134/124);  total (134/126)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,817,5310CG99.2% 592.9 / ‑4.6 260intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  major base G (133/123);  minor base A (1/1);  total (134/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01
*CP0425831,817,5320TA99.6% 605.0 / NA 260intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (134/124);  minor base C (0/1);  total (134/126)
Fisher's exact test for biased strand distribution p-value = 4.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 260 total aligned reads displayed.

CCAGCCGCTGCGCATCAGCGCCGCACCAATGAGCATCATCCCTGCCAGTTGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCGCTTGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACGCTTG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGGCTCTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCGGGATTG  >  CP042583/1817251‑1817809
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                       
        tgcgagtCAGCGCCGCACCAATGAGCATCATCCCTGCCAGTTGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCAc                                                                                                                                                                                                                                                                         <  1:2607664/283‑1 (MQ=255)
        tGCGCATCAGCGCCGCACCAATGAGCATCATCCCTGCCAGTTGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCAc                                                                                                                                                                                                                                                                         <  1:859001/289‑1 (MQ=255)
                                          tGCCAGTTGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTaa                                                                                                                                                                                                                                      >  2:2743947/1‑289 (MQ=255)
                                            ccAGTTGCCAGCCATCCTGTGCCCCCAGTGCCAGTAAACTGTGGCCAACCCCATCGGCACGATTACTGATCGCTTCAACGCCGCCGGGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGc                                                                                                                                                                                                                                    <  2:215613/289‑1 (MQ=255)
                                                ttGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCCTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTCGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATCAAGCATGACGCCTGTATTAAACAGGCTTTTCACCGATG‑GCCCATCGCGCACCAGCCGCCCGCAGATTAAG‑CCCACCAGCCCGTAACCCacc                                                                                                                                                                                                                                >  2:175543/1‑287 (MQ=255)
                                                 tGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGc                                                                                                                                                                                                                                <  1:2743947/288‑1 (MQ=255)
                                                 tGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCa                                                                                                                                                                                                                               >  2:831874/1‑289 (MQ=255)
                                                          tACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAAAACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGc                                                                                                                                                                                                                      <  1:2997211/289‑1 (MQ=255)
                                                                 cgcCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAgccgcc                                                                                                                                                                                                                                                                 >  2:2580077/1‑240 (MQ=255)
                                                                    ccAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAACCGCCAAGCCCCAC‑CAGATAAAGCATGACCCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCACGCCCCAACAGCCGCACCCAGATTCAG‑CCCACCAACCCGGAACCCACCAAAACAACGCAGTCCCaaaa                                                                                                                                                                                                            >  2:2954906/1‑289 (MQ=255)
                                                                    ccAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGa                                                                                                                                                                                                             >  1:810865/1‑288 (MQ=255)
                                                                      aGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCAACGCGCACCAGCCGCCAGCCGATCACG‑CCAACCAGCCCGTAAGCCCGCGAAATATTGCCGTCCCAGAACa                                                                                                                                                                                                          >  1:3014174/1‑289 (MQ=255)
                                                                       gTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑Cccac                                                                                                                                                                                                                                                <  2:793481/250‑1 (MQ=255)
                                                                       gTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATACCCCCGTCCCAGAACaa                                                                                                                                                                                                         >  1:1559960/1‑289 (MQ=255)
                                                                         gcaaGTAAAATGTGGCCAAACCGATCGTGACGATTACTGATCGCATCAACGCCGCCGTGAAGCTTCCAGGATGTTTCATACAAAAT‑AGCCGATGCATCCGGCGGCAAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAAt                                                                                                                                                                                                        <  2:1817631/285‑1 (MQ=255)
                                                                                  cTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAGCCCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGa                                                                                                                                                                                               >  2:718903/1‑289 (MQ=255)
                                                                                  cTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGaa                                                                                                                                                                                              >  1:2079462/1‑289 (MQ=255)
                                                                                      tGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATaaa                                                                                                                                                                                          >  1:2478274/1‑289 (MQ=255)
                                                                                       gCCAACACCATCGGCACGATTACTGATCGCTTCACCGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAg                                                                                                                                                                                         <  2:490136/289‑1 (MQ=255)
                                                                                                aTCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAACAACCCGTCAAAAAACCCcaaaaaa                                                                                                                                                                                >  2:2645693/1‑288 (MQ=255)
                                                                                                 tCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAg                                                                                                                                                                                >  1:1410346/1‑288 (MQ=255)
                                                                                                  cGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCcaac                                                                                                                                                                                   <  1:1684242/284‑1 (MQ=255)
                                                                                                      aCGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAAc                                                                                                                                                                          <  1:1730939/289‑1 (MQ=255)
                                                                                                           tACTGAGCGCGTCAACGCCGCCGTTAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGTCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCTATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTcc                                                                                                                                                                                                                 <  1:1723644/245‑1 (MQ=255)
                                                                                                               gATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTaa                                                                                                                                                                  >  1:464975/1‑288 (MQ=255)
                                                                                                                  cGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAg                                                                                                                                                                                         >  1:1192082/1‑262 (MQ=255)
                                                                                                                    cTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCg                                                                                                                                                                                                                                         <  2:563684/212‑1 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCAt                                                                                                                                                                                                                                                                                <  1:1565598/163‑1 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCAt                                                                                                                                                                                                                                                                                >  2:1565598/1‑163 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAAc                                                                                                                                                                          <  1:2802330/264‑1 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGc                                                                                                                                                 >  1:2181816/1‑289 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGc                                                                                                                                                 >  1:750095/1‑289 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGc                                                                                                                                                 >  1:2922500/1‑289 (MQ=255)
                                                                                                                               ccgTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGc                                                                                                                                                 >  1:2133245/1‑289 (MQ=255)
                                                                                                                                       ttcccAGAAATTTTCATACGAAATGAGCG‑TCCCATCCGGCGTCCGGGCGCAGCATGTCTGGCTGTCCAAAAACAGCCCCAATAACAGCAAACCGCCCAGCCCCAC‑AAGATAAAGCATGACGCCTGAATTAACCAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCa                                                                                                                                         <  2:672757/286‑1 (MQ=255)
                                                                                                                                         tCCAGTATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGc                                                                                                                                                                                                                      >  2:1537598/1‑210 (MQ=255)
                                                                                                                                              tATTTTTCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGc                                                                                                                                                                                                                      <  2:1323233/205‑1 (MQ=255)
                                                                                                                                                   ttCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGcc                                                                                                                                                                                                                                   >  1:2900168/1‑187 (MQ=255)
                                                                                                                                                   ttCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAAt                                                                                                                                                                                                        <  2:1202009/214‑1 (MQ=255)
                                                                                                                                                   ttCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACgggg                                                                                                                                    <  1:558736/282‑1 (MQ=255)
                                                                                                                                                   ttCATACAAAAT‑AGCCGATGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAAc                                                                                                                             >  1:984575/1‑289 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGc                                                                                                                                                                                                                      <  1:2417198/182‑1 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGc                                                                                                                                                                                                                      >  2:2417198/2‑183 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCa                                                                                                                                                                                                               <  2:1045253/189‑1 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCa                                                                                                                                                                                                               >  1:1045253/2‑190 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGc                                                                                                                   >  2:2817146/2‑282 (MQ=255)
                                                                                                                                                                     atGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGACAAATGTGCCGGCCCGccc                                                                                                             >  2:352072/2‑286 (MQ=255)
                                                                                                                                                                      tGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCa                                                                                                           <  1:352072/289‑1 (MQ=255)
                                                                                                                                                                            cGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCg                                                                                                                >  2:2783413/1‑278 (MQ=255)
                                                                                                                                                                             ggCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAAAAGCGTTAACCGCGACTGGAACCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGAACCCAACAGTa                                                                                                    >  1:1469055/1‑289 (MQ=255)
                                                                                                                                                                                         cgGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAgcc                                                                                                                                                                                                                                                                    >  2:2205658/1‑118 (MQ=255)
                                                                                                                                                                                         cgGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTcc                                                                                                                                                                                                                 >  1:2563685/1‑168 (MQ=255)
                                                                                                                                                                                           gCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCa                                                                                                              >  1:926344/1‑265 (MQ=255)
                                                                                                                                                                                           gCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTg                                                                                      >  1:1155482/1‑289 (MQ=255)
                                                                                                                                                                                           gCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGAACCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCACACAGTAGCGCAAAAAGCGTg                                                                                      >  1:1020988/1‑289 (MQ=255)
                                                                                                                                                                                                    gCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTc                                                                             >  1:1510351/1‑289 (MQ=255)
                                                                                                                                                                                                       gTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGTTTCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGAACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGAAAGCCAGCAAAATATCGCCGTCCCAGATCAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTAAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCAcc                                                                          <  1:2502745/289‑1 (MQ=255)
                                                                                                                                                                                                          ggcaaTCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGAAAAAGCATGACGCATGTATTAAACAGGCTTTTTACCGATA‑GCGCATCGCGCACCATCCGCCAGCAGAATAAG‑ACCACCAGTCAGTAAGCCAGCAAACTATAGCCGTACCAGAACAATACACCGAGATTATCGACCAACAAGACTCATAACGTTAACAGCGCCTGGATCACGCGTCAGCAACGGGGCACTTAAATTTGCAGTCCCGCACCAAAAATCAACGCAACAAGAGTGAGGAATTACACCggg                                                                       >  2:2502745/4‑289 (MQ=255)
                                                                                                                                                                                                          ggAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCCACTGGATCCAGCGTCTGCCACAGGGCAGCAACATTTGCAGGCCCGCACCAACACGTCGCGCAAAACGCGCGACGAATTTCAcgtc                                                                        >  2:1377987/1‑285 (MQ=255)
                                                                                                                                                                                                              aTCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGa                                                                   >  1:231364/1‑289 (MQ=255)
                                                                                                                                                                                                              aTCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACACCGTTAACCGCGACTGGATCCAGCGCCTGCAACGGGGCAGCAACATTTGCAGCCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTAACCGGGCCGa                                                                   >  1:1251419/1‑289 (MQ=255)
                                                                                                                                                                                                               tCAGCCCCATAAGCAGCAAAACGCC‑CGCCCCACACGTATAAAACAGGACGCCTGTATTAACCAGGCTTTTTACCGATG‑GCGCATCACGCACCAGCCGCAAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATACAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGAt                                                                  <  2:3065916/289‑1 (MQ=255)
                                                                                                                                                                                                               tCAGCCCCAATACCAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACTCCTGTATTAAACAGGCTTTTTACAGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAGG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCTACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGAt                                                                  <  1:2029088/289‑1 (MQ=255)
                                                                                                                                                                                                               tCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGAt                                                                  <  1:218594/289‑1 (MQ=255)
                                                                                                                                                                                                               tCAGCCCCAACACCAGCAAAACGCCAGGCCCCAC‑CAGATAAAGAATGCCGCCTGTATTAAACAGGCTTTTTACCGAAG‑GCGCATCACGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGGCTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAACAAGCGTGAGGAATTTCACCTGGCCGAt                                                                  <  2:984575/289‑1 (MQ=255)
                                                                                                                                                                                                                cAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATg                                                                 <  1:2679160/289‑1 (MQ=255)
                                                                                                                                                                                                                cAGCCCCAAGACCAGCAAACCGCCAAGCCCCAC‑CGGAGAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATg                                                                 <  2:2181816/289‑1 (MQ=255)
                                                                                                                                                                                                                  gCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATgag                                                               >  1:380901/1‑289 (MQ=255)
                                                                                                                                                                                                                  gCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCACAACAAGACTAACAGCGGTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTCCAGGCCCTCACCAAACAGCAGCGCAAAAAGCGTGAGGAATTTCACTTGGCCGATgag                                                               >  1:1315690/1‑289 (MQ=255)
                                                                                                                                                                                                                          aaCAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGTTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGaa                                                       <  1:2826365/289‑1 (MQ=255)
                                                                                                                                                                                                                             aGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGAGTGAGGAATTTCa                                                                            >  2:2905140/1‑265 (MQ=255)
                                                                                                                                                                                                                               cAAACCCCCAAGCCCCCC‑CAGCTAAAACATGACGCCGGTATAAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTCAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCGGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGcc                                                  <  2:2079462/289‑1 (MQ=255)
                                                                                                                                                                                                                                    cGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCgcgact                                                                                                                                                          >  1:3183235/1‑175 (MQ=255)
                                                                                                                                                                                                                                         aGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCAACGGGGCAGCAACATTTGCAGGCCCGCACCAAACCGGTGCGCAAAAATCGTGAGGAATTTCACCTTGCCGATGAGCACAAGaaagacaacactccat                                         >  2:1880468/1‑275 (MQ=255)
                                                                                                                                                                                                                                               ac‑caGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAg                                                                                                      >  1:1870842/1‑221 (MQ=255)
                                                                                                                                                                                                                                                c‑caGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCCGCAACATTTCCAGGCACGCCCCAAACACTAGCGCAAAAAGCGTGAGGAATTCCACCTGCCCGATCAGATCAAGAAATGCAAAAGTCCAGGCATccc                                  >  2:1675794/1‑288 (MQ=255)
                                                                                                                                                                                                                                                c‑caGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCcg                                 <  2:464975/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    aaTAAAGCATGACGCCAGTATTAAACCGGCTTTTTACCGATG‑CCGCATCGCGCACCAGCCGCCACCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCgcgg                              <  2:1711792/288‑1 (MQ=255)
                                                                                                                                                                                                                                                      tAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGcc                                                  >  2:1236339/1‑267 (MQ=255)
                                                                                                                                                                                                                                                      tAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGcc                                                  <  1:1236339/267‑1 (MQ=255)
                                                                                                                                                                                                                                                      tAAAGCATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCgcgg                              <  1:486728/287‑1 (MQ=255)
                                                                                                                                                                                                                                                      tAAAGCAGGACGCCTGCATTAACCAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATAAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGGGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCgcgg                              <  2:1510351/287‑1 (MQ=255)
                                                                                                                                                                                                                                                         aGCCTGACCCCTGATTTAAACAGGCTCTTTACCAATG‑GGGCATCGCGCACCAGCCGCGAGCAGATTAAA‑CCCACCCGCCCGCAAGCCAGCAAAATACCGCCGACCCAGAACAATAACCCATGAAGAAAGCCCACCAACACCAACAGCGTTAACCGCGACTGGATCCAGGGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTaa                         <  2:1459301/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           cATGACGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCgcgg                              <  2:905956/282‑1 (MQ=255)
                                                                                                                                                                                                                                                             aaagacaggTATTAAACAGGCTTTTTA‑GCGAGCGCGCATCGCGAACAAGCCGCCAGCAGCTAAAG‑CCCACCACACACTAAGCCAGCAAAAGATCGAGGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAAGTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGc                     <  2:2033854/281‑1 (MQ=255)
                                                                                                                                                                                                                                                               aCGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCa                                                                                                                                         <  2:3080768/171‑1 (MQ=255)
                                                                                                                                                                                                                                                               aCGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGc                                                                                                                   <  1:1645310/193‑1 (MQ=255)
                                                                                                                                                                                                                                                               aCGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGc                                                                                                                   >  2:1645310/1‑193 (MQ=255)
                                                                                                                                                                                                                                                               aCGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAAt                                                                                >  1:676103/1‑228 (MQ=255)
                                                                                                                                                                                                                                                               aCGCCTGTATTAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCa                    <  1:2879835/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 gaccggaTTAAACCGGCTTTTTCCCGATG‑GCGAATCGCGAACCAGCCGCCAGCAAATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCa                    <  2:2830614/280‑1 (MQ=255)
                                                                                                                                                                                                                                                                        ttAAACAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAgg          <  1:579839/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           aaCAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCa                                                                                                                                                                                                               <  1:19159/89‑1 (MQ=255)
                                                                                                                                                                                                                                                                           aaCAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCgg       >  2:871603/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           aaCAGGCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGAGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGAACAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCgg       >  1:77038/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                gCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAAc                                                                                                                             >  2:2445814/1‑166 (MQ=255)
                                                                                                                                                                                                                                                                                gCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCGGGATTg  >  1:1448500/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                gCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCGGGATTg  >  2:2893282/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                gCTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGCCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCAc                                                                           <  2:1928452/216‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 cTTTTTACCGATG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGCGACTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCGGGAt    <  1:871603/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                       
CCAGCCGCTGCGCATCAGCGCCGCACCAATGAGCATCATCCCTGCCAGTTGCCAGCCATACTGTGCGCCCAGTGCCAGTAAACTGTTGCCAACACCATCGGCACGATTACTGATCGCTTCAACGCCGCCGTGAAGCTTCCAGTATTTTTCATACAAAAT‑AGCGCTTGCATCCGGCGTCCAGGCGCGGCTGGTCTGGCTGTCGGAAATCAGCCCCAATAACAGCAAAACGCCAAGCCCCAC‑CAGATAAAGCATGACGCCTGTATTAAACAGGCTTTTTACGCTTG‑GCGCATCGCGCACCAGCCGCCAGCAGATTAAG‑CCCACCAGCCCGTAAGCCAGCAAAATATCGCCGTCCCAGAACAATAAACCGTGAATAAAGCCCAACAAGACTAACAGCGTTAACCGGCTCTGGATCCAGCGTCTGCCACGGGGCAGCAACATTTGCAGGCCCGCACCAAACAGTAGCGCAAAAAGCGTGAGGAATTTCACCTGGCCGATGAGATCAAGAAATGCCCAAGTCCATGCATCCCGCGGCGTAATAGCACCGTACCAGGCGGGATTG  >  CP042583/1817251‑1817809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A