Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,921,060 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,921,0600AT99.8% 1079.6 / NA 446intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base T (198/247);  total (198/248)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,921,0610GC100.0% 1066.6 / NA 446intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (198/248);  total (198/248)
*CP0425831,921,0620CG99.8% 1073.6 / NA 446intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (198/247);  minor base T (0/1);  total (198/248)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 446 total aligned reads displayed.

AGGAAAATCTTAATGAAACGTGTCGTATTAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTAGCTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCACTCCGCACGGTATAAGGATG  >  CP042583/1920784‑1921340
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                        
aGGAAAATCTTAATGAAACGTGTCGTATTAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTa                                                                                                                                                                                                                                                                                >  1:1007336/1‑289 (MQ=255)
          tAATGAAACGTGTCGTATTAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGcc                                                                                                                                                                                                                                                                      >  2:3155729/1‑289 (MQ=255)
                  cGTGTCGTATTAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAg                                                                                                                                                                                                                                                              >  1:2861293/1‑289 (MQ=255)
                           ttAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCAc                                                                                                                                                                                                                                                     <  1:1474934/289‑1 (MQ=255)
                                gAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGATGGCTAAAGAAAAGCCGGAAGAAGGCAGTACACTGttt                                                                                                                                                                                                                                                >  2:867034/1‑289 (MQ=255)
                                 aaTTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGtttt                                                                                                                                                                                                                                               <  2:2498126/289‑1 (MQ=255)
                                  aTTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGtttt                                                                                                                                                                                                                                               <  2:1718680/288‑1 (MQ=255)
                                      cTTGTGCCACTACTAGGTTGAAACCCCTGTTACCCTTCATTTACAGCGCATAGATTCCACCAGCCACTACCACAAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAATCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTtacta                                                                                                                                                                                                                                          <  2:2361263/289‑1 (MQ=255)
                                                    aGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGa                                                                                                                                                                                                                            <  1:1578811/289‑1 (MQ=255)
                                                      cTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGa                                                                                                                                                                                                                            <  2:738104/287‑1 (MQ=255)
                                                          acacCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGTTAGAAGGCAGTCCACTGTTTTTACTACAAATGTACATGGAACAAta                                                                                                                                                                                                                      >  2:240556/1‑288 (MQ=255)
                                                          acacCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAAtt                                                                                                                                                                                                                      >  2:1191430/1‑289 (MQ=255)
                                                          acacCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAAtt                                                                                                                                                                                                                      >  2:5518/1‑289 (MQ=255)
                                                                cTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGGATGGAAAATTTATTGGc                                                                                                                                                                                                                >  2:677135/1‑289 (MQ=255)
                                                                cTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGAAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGc                                                                                                                                                                                                                >  2:1649583/1‑289 (MQ=255)
                                                                             tttGCAGGGCATAGATTCAACCGGCCACTACCAGTAATAGGGCGACCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGGCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAAtt                                                                                                                                                                                                   <  2:2825264/289‑1 (MQ=255)
                                                                                gCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGa                                                                                                                                                                                                >  2:2697450/1‑289 (MQ=255)
                                                                                    cgcATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑g                                                                                                                                                                                          >  1:523612/1‑289 (MQ=255)
                                                                                     gcATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGata                                                                                                                                                                                              <  1:646342/286‑1 (MQ=255)
                                                                                     gcATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑g                                                                                                                                                                                          <  1:867034/288‑1 (MQ=255)
                                                                                      cATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑gag                                                                                                                                                                                        >  1:1311752/1‑289 (MQ=255)
                                                                                      cATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGGCCACTGTTTTTACTACAAAAGGGCAAGGAACAATTAGTGGAGATTGGAAAAATTTGattatgt                                                                                                                                                                                          >  2:2145994/1‑284 (MQ=255)
                                                                                            ttCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGa                                                                                                                                                                                  <  1:5518/289‑1 (MQ=255)
                                                                                                    gCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGCACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGCACAATTAGTGTCGATTGGAAAAATTTAAGAT‑‑GAGACAGGATGGCGCag                                                                                                                                                                          >  2:3069023/1‑288 (MQ=255)
                                                                                                     ccactaccactaATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGa                                                                                                                                                                                                                                                                <  1:778443/204‑1 (MQ=255)
                                                                                                     ccactaccactaATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGa                                                                                                                                                                                                                                                                >  2:778443/1‑204 (MQ=255)
                                                                                                     ccactaccactaATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCAt                                                                                                                                                                                                                               <  1:1970852/237‑1 (MQ=255)
                                                                                                     ccactaccactaATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAA‑‑GAGACAGGATGGCGCATg                                                                                                                                                                         >  1:1024139/1‑289 (MQ=255)
                                                                                                                 agaGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGTAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCt                                                                                                                                                              >  2:2534179/3‑288 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTa                                                                                                                                                                                                                                                                  <  2:170515/186‑1 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTcc                                                                                                                                                                                                                                                       >  1:1114487/1‑197 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCa                                                                                                                                                                                                                                                      <  2:2318780/198‑1 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑gaga                                                                                                                                                                                       <  1:1409755/259‑1 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGt                                                                                                                                                         >  2:1021164/1‑289 (MQ=255)
                                                                                                                     tGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTCTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATGGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAACGAAAAGCCGGTAGCAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGCTTGGGAAAATGTGATAT‑‑GATACAGGATGGCGCATGAATGCAATCCTgacgt                                                                                                                                                         >  2:11295/1‑285 (MQ=255)
                                                                                                                      gcgcCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAAtt                                                                                                                                                                                                   >  1:2321905/1‑248 (MQ=255)
                                                                                                                      gcgcCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTa                                                                                                                                                        >  1:2214173/1‑289 (MQ=255)
                                                                                                                         cccAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGtt                                                                                                                                                                                                                                                 >  2:2223789/1‑199 (MQ=255)
                                                                                                                         cccAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTtac                                                                                                                                                                                                                                            >  2:454110/1‑204 (MQ=255)
                                                                                                                         cccAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACa                                                                                                                                                     >  1:2992743/1‑289 (MQ=255)
                                                                                                                              cagATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAAtt                                                                                                                                                                                                   >  1:1647615/1‑240 (MQ=255)
                                                                                                                                   aaaaTGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGa                                                                                                                                                                                                                            >  1:57686/1‑210 (MQ=255)
                                                                                                                                   aaaaTGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGa                                                                                                                                                                                                                            <  2:57686/210‑1 (MQ=255)
                                                                                                                                   aaaaTGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTtta                                                                                                                                           >  1:1460152/1‑289 (MQ=255)
                                                                                                                                                aaTCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGc                                                                                                                                                                                                                                                                       >  1:449058/1‑154 (MQ=255)
                                                                                                                                                aaTCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCAt                                                                                                                                                                          <  2:2449108/245‑1 (MQ=255)
                                                                                                                                                   cAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTg                                                                                                                           <  1:1743838/289‑1 (MQ=255)
                                                                                                                                                      gCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCAACGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCt                                                                                                                        >  1:3111607/1‑289 (MQ=255)
                                                                                                                                                                cGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGata                                                                                                                                                                                              >  2:2588368/1‑211 (MQ=255)
                                                                                                                                                                cGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGata                                                                                                                                                                                              <  1:2588368/211‑1 (MQ=255)
                                                                                                                                                                cGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                                                              >  1:2153724/1‑289 (MQ=255)
                                                                                                                                                                cGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                                                              >  1:1613606/1‑289 (MQ=255)
                                                                                                                                                                cGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGaa                                                                                                              >  2:2247396/1‑289 (MQ=255)
                                                                                                                                                                    gAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACaaa                                                                                                                                                                                                                                      <  1:2245514/167‑1 (MQ=255)
                                                                                                                                                                     aaTTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAg                                                                                                         >  1:276722/1‑289 (MQ=255)
                                                                                                                                                                             tCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGc                                                                                                 <  2:644134/289‑1 (MQ=255)
                                                                                                                                                                                    ggATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTaa                                                                                                                                                       <  1:993995/228‑1 (MQ=255)
                                                                                                                                                                                            cATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCg                                                                                    <  1:1170870/287‑1 (MQ=255)
                                                                                                                                                                                            cATAGCCTTACAACCCGAGGTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCAGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCg                                                                                    <  2:2079423/287‑1 (MQ=255)
                                                                                                                                                                                             aTCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCt                                                                                  <  1:2697450/288‑1 (MQ=255)
                                                                                                                                                                                               cGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTg                                                                               >  1:935126/1‑289 (MQ=255)
                                                                                                                                                                                               cGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTg                                                                               >  1:248848/1‑289 (MQ=255)
                                                                                                                                                                                                gCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGt                                                                              >  2:1916870/1‑289 (MQ=255)
                                                                                                                                                                                                    tACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTtata                                                                          <  1:2131619/289‑1 (MQ=255)
                                                                                                                                                                                                       aaCCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACag                                                                       <  1:677135/289‑1 (MQ=255)
                                                                                                                                                                                                         ccAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGt                                                                                                                                                         >  1:1703421/1‑205 (MQ=255)
                                                                                                                                                                                                         ccAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  2:1553870/289‑1 (MQ=255)
                                                                                                                                                                                                         ccAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  1:2393320/289‑1 (MQ=255)
                                                                                                                                                                                                         ccAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  1:742879/289‑1 (MQ=255)
                                                                                                                                                                                                         ccAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  2:1396249/289‑1 (MQ=255)
                                                                                                                                                                                                            gagTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGAc                                                                                                                                                                                      >  2:1343421/1‑173 (MQ=255)
                                                                                                                                                                                                            gagTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCg                                                                                    <  2:2179645/271‑1 (MQ=255)
                                                                                                                                                                                                            gagTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCg                                                                                    >  1:2179645/1‑271 (MQ=255)
                                                                                                                                                                                                            gagTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  2:1466673/286‑1 (MQ=255)
                                                                                                                                                                                                              gTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGca                                                                   <  2:276722/286‑1 (MQ=255)
                                                                                                                                                                                                                 aaCGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCatat                                                             >  2:1456113/1‑289 (MQ=255)
                                                                                                                                                                                                                 aaCGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCatat                                                             >  2:2038591/1‑289 (MQ=255)
                                                                                                                                                                                                                  aCGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTActct                                                                                                                                              >  1:400685/1‑207 (MQ=255)
                                                                                                                                                                                                                  aCGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTActct                                                                                                                                              <  2:400685/207‑1 (MQ=255)
                                                                                                                                                                                                                       gAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAgg                                                                                                                 <  1:2423222/231‑1 (MQ=255)
                                                                                                                                                                                                                         aaaGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGAtt                                                     <  1:2628967/289‑1 (MQ=255)
                                                                                                                                                                                                                              aTTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTcac                                                  <  1:62110/287‑1 (MQ=255)
                                                                                                                                                                                                                                    ggTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     >  1:913700/1‑264 (MQ=255)
                                                                                                                                                                                                                                    ggTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATATGAGAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACagag                                                                     <  2:913700/264‑1 (MQ=255)
                                                                                                                                                                                                                                     gTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAg                                          <  2:935126/288‑1 (MQ=255)
                                                                                                                                                                                                                                              gttccgttcaTCTCGAACCAACTTTCTATCGACCGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAgg                                <  2:2666626/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    ttccTCTCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTAATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGttt                          >  1:1905383/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       ctctCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGata                                                                                                                                                                                              >  2:2994650/1‑124 (MQ=255)
                                                                                                                                                                                                                                                       ctctCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAAc                                                                                                    <  2:36043/212‑1 (MQ=255)
                                                                                                                                                                                                                                                       ctctCGAACCAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAAc                                                                                                    >  1:36043/1‑212 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  2:2976873/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  1:2529987/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  2:539546/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  1:2038591/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  1:1533991/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  1:1348812/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  2:1827535/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               ccAACTTTCTATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATCCAGGCAGTTTATctgaccgca               <  2:1613606/289‑9 (MQ=255)
                                                                                                                                                                                                                                                               acAACTTTCTATCGACAGATTTCGTTGATGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGAGAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCATTATCAGGGAAATCAGTAAACAGGCAATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATctgaccgca               <  1:3070220/288‑9 (MQ=255)
                                                                                                                                                                                                                                                                        tATCGACAGATTTCGTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGTATAAg      >  1:1817091/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                        
AGGAAAATCTTAATGAAACGTGTCGTATTAATGAATTTCTTTTGCCACTACTAGCTTGACACCGCTTTTACCCTTCATTTGCAGCGCATAGATTCCACCAGCCACTACCACTAATAGTGCGCCCAGCAGATAAAATGTGAATTTAATCAGGCGGATACAGCGATGAATTTTATTCGACAGGGATTAGGCATCGCCTTACAACCAGAGTTAACGCTGAAAAGCATTGCAGGTGAATTGTGTTCCGTTCCTCTCGAACCAACTTTCTATCGACAGATTAGCTTGCTGGCTAAAGAAAAGCCGGTAGAAGGCAGTCCACTGTTTTTACTACAAATGTGCATGGAACAATTAGTGGCGATTGGAAAAATTTGATAT‑‑GAGACAGGATGGCGCATGAACGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCACTCCGCACGGTATAAGGATG  >  CP042583/1920784‑1921340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A