Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 556,507 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583556,5070GC99.4% 357.0 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (80/74);  total (81/74)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583556,5080CG98.7% 351.7 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base G (79/74);  total (81/74)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583556,5090TA99.4% 357.1 / NA 155intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (80/74);  total (81/74)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 155 total aligned reads displayed.

GTTTCTTCCTGATACTGCCAGCGAATGTGCAATGGGCTTTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGGCTA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAACTGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTG  >  CP042583/556238‑556787
                                                                                                                                                                                                                                                                              |||                                                                                                                                                                                                                                                                                       
            tACTGCCAGCGAATGTGCAATGGCGATTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTACCG‑CCACCGAGATCAAACACCA‑GCTACCGGGTCTTTTGTTGGGTATGccgtgcga                                                                                                                                                                                                                                                           >  2:106682/1‑282 (MQ=255)
                 ccAGCGAATGTGCAATGGCGATTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGcc                                                                                                                                                                                                                                                      >  1:310508/1‑289 (MQ=255)
                 ccAGCGAATGTGCAATGGCGATTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGCTCCTGGCGACATCTGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTCACGTCAAACGTGCCG‑CCTCCGAGATCAAACACCAGCGAA‑CGGGCATTTTGTTGGGTATGTAGGCCATACGcc                                                                                                                                                                                                                                                      >  1:683258/1‑289 (MQ=255)
                      gAATGTGCAATGGCGATTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCg                                                                                                                                                                                                                                                  <  1:413075/288‑1 (MQ=255)
                             caattgcgattgcttgcTACATTTTGCCGCTTCCACACAGGCGTACAAGTCTGCCAGTTCACTCTCGTTAAGCGTGTTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAgctgct                                                                                                                                                                                                                                          <  1:365764/280‑1 (MQ=255)
                                tggcgattGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTACCGTCAAACGTGCCG‑CCACCGAGATCAAACACCATCGAA‑CGGTTATTTTGTTTGGTATGCAGGCCATACGCCATCCCATccgctgag                                                                                                                                                                                                                                       >  2:1029190/7‑287 (MQ=255)
                                tggcgattGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCtgtg                                                                                                                                                                                                                                       <  1:1622814/283‑1 (MQ=255)
                                tggcgattGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCtgtg                                                                                                                                                                                                                                       >  2:621462/7‑289 (MQ=255)
                                          ttGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCattaa                                                                                                                                                                                                                             >  2:1235456/1‑289 (MQ=255)
                                            gCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCattaatt                                                                                                                                                                                                                           >  1:216688/1‑289 (MQ=255)
                                               cgatgttGCCGATTCCCATCAAGCGTACAAGGCCACCAGTGCACTCTAGCTAAACGTGGACCTAGCGTCATCCGCGCGTTTTAAAAACTCATCGACCCGCATAAGGGTAAAAGCGTCGCCACCGAGAAAGTTGTCGCCAACGGAGGCGTGAACATCAATCACCGGCGTGGCGTACTCAAGTTCTGTTATGTCGAACCCGCCGACCCCCGA‑AACAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGTAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAg                                                                                                                                                                                                                        <  2:683258/284‑1 (MQ=255)
                                                            tCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGCTCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTAGGCAGGCCATCCGCCATCCAAGCGCCTGTGGTTGCTTTAATTAAGCTCTCCGCTTTTa                                                                                                                                                                                                           >  2:161711/1‑289 (MQ=255)
                                                              caaacatgagTACAAGGCTGCCAGTTCATTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACATCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCCGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         <  1:1354605/280‑1 (MQ=255)
                                                                     gCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACAACAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTa                                                                                                                                                                                                  >  1:202291/1‑289 (MQ=255)
                                                                     gCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATATTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTAAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTTGGTATGCAGGCAATACGCCATCGACGCTGCTGTGGGTTTATGAAATAAGGCTACCGCATTTAACACgccaa                                                                                                                                                                                                  >  2:563949/1‑285 (MQ=255)
                                                                        tACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGTGGATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGTGTTTGTGAACTACACGGACCGCATTTAACACGGCCAAca                                                                                                                                                                                               >  2:1067969/1‑288 (MQ=255)
                                                                            aGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCgc                                                                                                                                                                                           <  1:1777496/289‑1 (MQ=255)
                                                                               gtGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGGGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCgctg                                                                                                                                                                                         <  1:1828397/287‑1 (MQ=255)
                                                                               cTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAg                                                                                                                                                                                                                                               <  1:814190/234‑1 (MQ=255)
                                                                               cTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCgct                                                                                                                                                                                          >  1:1207238/1‑287 (MQ=255)
                                                                                  ccATTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTaa                                                                                                                                                                                     <  1:1067969/289‑1 (MQ=255)
                                                                                  ccAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAg                                                                                                                                                                                                                                               >  2:1374177/1‑231 (MQ=255)
                                                                                          ctctCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTAt                                                                                                                                                                             >  2:925379/1‑289 (MQ=255)
                                                                                            ctcGTTAAGCGTGGGCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGc                                                                                                                                                                           <  1:1135546/289‑1 (MQ=255)
                                                                                                ttAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         <  1:1561088/255‑1 (MQ=255)
                                                                                                ttAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         >  2:1561088/1‑255 (MQ=255)
                                                                                                ttAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGc                                                                                                                                                                       <  1:986434/289‑1 (MQ=255)
                                                                                                     cGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCgttgt                                                                                                                                                                  >  2:1176189/1‑289 (MQ=255)
                                                                                                         gTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         >  1:107631/1‑246 (MQ=255)
                                                                                                         gTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATGTAACCCGGCTAACTCCGCTGCTaa                                                                                                                                                                                     >  2:1821449/1‑266 (MQ=255)
                                                                                                          tCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGCGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTaa                                                                                                                                                                                     <  1:904098/265‑1 (MQ=255)
                                                                                                           ccTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCg                                                                                                                                                            <  1:1027958/289‑1 (MQ=255)
                                                                                                                 gtcactcgcgtattttAAATCACCCTCGACCCGCCTATGGTTAAAATCTTCGACACCAAGAAAGTTCACACCGGCGGAGGCGTCAACTTCAACCACCGGCGTGGCATACTCAAGCATCTTAACGTAACACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGaaa                                                                                                                                                      <  2:310508/277‑1 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAg                                                                                                                                                                                                                                               <  1:1300169/197‑1 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAg                                                                                                                                                                                                                                               >  2:1300169/1‑197 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTACGCGTACCTCATTTAACCCGGCTAACCCCCCTTCCAAACGGGGATGCTTGCGTGGCTCTCCGCGGAAATaa                                                                                                                                                   >  2:1887290/1‑289 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTACGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGTTGAAAtta                                                                                                                                                   >  1:29743/1‑287 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCg                                                                                                                                                                                                                      <  1:265081/222‑1 (MQ=255)
                                                                                                                    aTCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATaa                                                                                                                                                   >  1:1568346/1‑289 (MQ=255)
                                                                                                                      cccatcgTTTTAAAACCTCATCTGCCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGc                                                                                                                                                 <  1:1932419/284‑1 (MQ=255)
                                                                                                                      ccGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGc                                                                                                                                                 <  1:1235456/289‑1 (MQ=255)
                                                                                                                         cgcgTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCgg                                                                                                                                              >  2:922966/1‑289 (MQ=255)
                                                                                                                         cgcgTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCAATACGCCATCGCCGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCCAACTCCGCCGCTATACGGGTATCCTTTCGTTGTTGACCGCTGAAATAAGCCgg                                                                                                                                              >  2:1803461/1‑289 (MQ=255)
                                                                                                                             ttctAAAACCTCGTCGGCCATCATAGGGGTAAAATCGTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACAGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACg                                                                                                                                          <  2:29743/286‑1 (MQ=255)
                                                                                                                               ttACAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGga                                                                                                                                        <  1:921302/289‑1 (MQ=255)
                                                                                                                                        cATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         >  2:575006/1‑215 (MQ=255)
                                                                                                                                        cATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGc                                                                                                                                                 >  2:447775/1‑271 (MQ=255)
                                                                                                                                        cATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATcaccac                                                                                                                               >  1:648884/1‑289 (MQ=255)
                                                                                                                                                   acatGGTTAAAATCTTCGCCACCAATAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGCGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCg                                                                                                                    <  1:1856330/287‑1 (MQ=255)
                                                                                                                                                       gggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGTCGGAACGGAGATCACCACAACCTTAATCGGACg                                                                                                                >  2:1475521/1‑289 (MQ=255)
                                                                                                                                                         gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCgctg                                                                                                                                                                                         >  1:68264/1‑214 (MQ=255)
                                                                                                                                                         gTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCgctg                                                                                                                                                                                         <  2:68264/214‑1 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGc                                                                                                                                                                                                                                                              >  1:1387941/1‑142 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCg                                                                                                                                                                                            <  1:1862547/208‑1 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCg                                                                                                                                                                                            >  2:1862547/1‑208 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCTCTGCTAAACGGGTATGCTTGCGTTTTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCa                                                                                                           >  2:1311621/1‑289 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTa                                                                                                                                                                                      >  2:22243/1‑214 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTCTGCTTTCGTTGTTAATCGCTGAAATAAGCCGGAACGGAGATCACCACATTTTCACTCGGACGTTGCa                                                                                                           >  2:833944/1‑289 (MQ=255)
                                                                                                                                                            aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCa                                                                                                           >  1:52108/1‑289 (MQ=255)
                                                                                                                                                                  tCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCa                                                                                                                                                                                                                                                            >  2:497443/1‑138 (MQ=255)
                                                                                                                                                                      caccaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAAttctt                                                                                                  <  1:1176189/288‑1 (MQ=255)
                                                                                                                                                                              aaGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCAtc                                                                                           <  1:1475521/287‑1 (MQ=255)
                                                                                                                                                                                gTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCAtcttct                                                                                       >  1:61511/1‑289 (MQ=255)
                                                                                                                                                                                   gTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCtttt                                                                                    >  1:507665/1‑289 (MQ=255)
                                                                                                                                                                                    tCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCa                                                                                                                                                                                                                                                            >  1:577881/1‑120 (MQ=255)
                                                                                                                                                                                    tCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACcaca                                                                                                                              <  1:841563/246‑1 (MQ=255)
                                                                                                                                                                                            ggAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGGAATTCTTCGGCATCTTCTTTTaatgagcg                                                                            <  1:563949/288‑7 (MQ=255)
                                                                                                                                                                                            ggAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTaatgagcg                                                                            <  1:1887290/288‑7 (MQ=255)
                                                                                                                                                                                            ggAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTaatgagcg                                                                            <  1:404874/288‑7 (MQ=255)
                                                                                                                                                                                            ggAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTaatgagcg                                                                            <  1:761248/288‑7 (MQ=255)
                                                                                                                                                                                            ggAGGCGTGAACTGCAATCACCAGCGTGCCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTaatgagcg                                                                            <  2:216688/288‑7 (MQ=255)
                                                                                                                                                                                              aGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCgttgtt                                                                                                                                                                 >  2:138193/1‑201 (MQ=255)
                                                                                                                                                                                              aGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCgttgtt                                                                                                                                                                 <  1:138193/201‑1 (MQ=255)
                                                                                                                                                                                                          cAATCCCCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCATGTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGa                                                             <  1:1664863/289‑1 (MQ=255)
                                                                                                                                                                                                          cAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATTCCAAAGAGGa                                                             >  1:554277/1‑289 (MQ=255)
                                                                                                                                                                                                          cAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATAAGCGTAATACCAAAGAgg                                                              >  1:1414847/1‑288 (MQ=255)
                                                                                                                                                                                                                  ggcgtggcgtACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTCCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTg                                                     >  1:333724/1‑289 (MQ=255)
                                                                                                                                                                                                                             cTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACACGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAAt                                          >  2:963409/1‑289 (MQ=255)
                                                                                                                                                                                                                              tCAAGCATCGTAACGACAAACGGGCCG‑CCAACGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAAc                                                                                                                                                                                                         <  2:803841/129‑1 (MQ=255)
                                                                                                                                                                                                                                 agtacccttatgTCAAACGTGCCG‑CCACCGGGGTCAAACACCCGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATgtgt                                      <  2:839669/278‑1 (MQ=255)
                                                                                                                                                                                                                                   cACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTACTCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTc                                     >  2:366721/1‑288 (MQ=255)
                                                                                                                                                                                                                                     ccGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGa                                                                                                                  <  2:1437963/209‑1 (MQ=255)
                                                                                                                                                                                                                                     ccGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGa                                                                                                                  >  1:1437963/1‑209 (MQ=255)
                                                                                                                                                                                                                                        tAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTggg                                                                                                                                                                                                                                     <  1:350432/91‑1 (MQ=255)
                                                                                                                                                                                                                                        tAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACt                                                                                                                                                                                               >  1:803841/1‑129 (MQ=255)
                                                                                                                                                                                                                                        tAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGc                                >  2:708496/1‑288 (MQ=255)
                                                                                                                                                                                                                                        tAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGAGCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCACAGAGGACAGTTCTGGAGCGTTAAAGTTGTCGCtt                                 >  2:1686158/1‑286 (MQ=255)
                                                                                                                                                                                                                                               aaaCGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGc                        <  2:507665/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 acctGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCa                      <  1:464440/286‑1 (MQ=255)
                                                                                                                                                                                                                                                 aCGTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CTGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCa                      <  1:1224002/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   gTGCCG‑CCACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                    <  1:939613/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     gccg‑ccACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTACTCGCCGGTTg                  >  2:1270105/1‑289 (MQ=255)
                                                                                                                                                                                                                                                     gccg‑ccACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTg                  >  2:1967523/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      ccg‑ccACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTgg                 >  2:1102180/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       cg‑ccACCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTgg                 <  1:922966/288‑1 (MQ=255)
                                                                                                                                                                                                                                                            aCCGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTa            <  1:1270105/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             ccGAGATCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTaat                                                                                 <  1:1719849/219‑2 (MQ=255)
                                                                                                                                                                                                                                                                   tCAAACACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGcc       <  1:650025/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aaCACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg  <  1:1102180/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      aaCACCAGCGAA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg  <  1:1029190/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              |||                                                                                                                                                                                                                                                                                       
GTTTCTTCCTGATACTGCCAGCGAATGTGCAATGGGCTTTGATTGCTACATTTTGCCGCTTCCACACAGGCGTACAAGGCTGCCAGTTCACTCTCGTTAAGCGTGGTCCTGGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACGTGCCG‑CCACCGAGATCAAACACCAGGCTA‑CGGGTATTTTGTTGGGTATGCAGGCCATACGCCATCGCAGCTGCTGTGGGTTCATTAATTAAGCGTACCGCATTTAACCCGGCTAACTCCGCTGCTAAACGGGTATGCTTGCGTTGTTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAAACTGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTG  >  CP042583/556238‑556787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A