Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 562,186 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583562,1860GC99.6% 602.3 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (127/130);  total (127/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583562,1870CG99.6% 601.1 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (126/131);  total (127/131)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583562,1880TA99.2% 602.2 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (127/129);  minor base C (0/2);  total (127/131)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 258 total aligned reads displayed.

ACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCGCTCAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑GCTGC‑TCATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATGCTCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCACTTTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGGCTGCTACCTTTATCACGCAACTCACCGTCCAG  >  CP042583/561906‑562464
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
     tggcgGGTGAACTGGGGGATCATAGCCGGAACCTCACCCTGGGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCt                                                                                                                                                                                                                                                                              <  2:1136203/287‑1 (MQ=255)
      cgcgGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCCATAAGCCCAATACCATTTGCCCACCgcggccgacg                                                                                                                                                                                                                                                                             >  2:1022109/1‑284 (MQ=255)
      cgcgGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTg                                                                                                                                                                                                                                                                             >  2:1911733/1‑289 (MQ=255)
                 tgggggCTCATCGCCTGAATCCAACCCGGCGGGCCAAGCACCGCCGTAATGCCGTTGTTGGTGCTTCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGcc                                                                                                                                                                                                                                                                  <  2:1716582/286‑1 (MQ=255)
                                tGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCCGaacgacg                                                                                                                                                                                                                                                   >  1:950200/1‑284 (MQ=255)
                                 gAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGaacgacg                                                                                                                                                                                                                                                   >  1:1703908/1‑283 (MQ=255)
                                       cACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGaacgacgacatcgg                                                                                                                                                                                                                                            <  2:1703908/289‑13 (MQ=255)
                                        aCCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGaacgacgacatcggc                                                                                                                                                                                                                                           <  1:146638/289‑14 (MQ=255)
                                              cGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGcc                                                                                                                                                                                                                                                                  <  1:1926294/260‑1 (MQ=255)
                                              cGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCa                                                                                                                                                                                                                                   >  1:674505/1‑289 (MQ=255)
                                              cGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCa                                                                                                                                                                                                                                   >  1:1617064/1‑289 (MQ=255)
                                              cGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCACAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCa                                                                                                                                                                                                                                   >  1:226269/1‑289 (MQ=255)
                                                   cAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              <  2:1084136/289‑1 (MQ=255)
                                                    aaTCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAAc                                                                                                                                                                                                                             >  1:564616/1‑289 (MQ=255)
                                                                 aTGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACAACGGCAGAACAAAGCAAGGTGCTAACGGAc                                                                                                                                                                                                                >  2:483355/1‑289 (MQ=255)
                                                                       ttgttgGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAACTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCCGGATAAATGGCCCACGGCTGAA‑‑CTACGACATCTGCAGATCAAAGAAAGGGGCTACCGGCAGCAG‑aa                                                                                                                                                                                                         >  2:528098/1‑289 (MQ=255)
                                                                                   cgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCg                                                                                                                                                                                             >  2:1155557/1‑289 (MQ=255)
                                                                                   cgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCg                                                                                                                                                                                             >  1:789182/1‑289 (MQ=255)
                                                                                   cgcAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCg                                                                                                                                                                                             >  1:1952475/1‑289 (MQ=255)
                                                                                        cAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              <  1:545130/252‑1 (MQ=255)
                                                                                        cAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              >  2:545130/1‑252 (MQ=255)
                                                                                             ggCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTc                                                                                                                                                                                   >  2:1958814/1‑289 (MQ=255)
                                                                                                  gcCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCa                                                                                                                                                                               <  1:1684518/288‑1 (MQ=255)
                                                                                                            gcgcACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGAGCAAAGAACGGTGCTAACGGACCCAGAAATGAAC‑CCCGCGGGACAAAACCCACAAACGGccccca                                                                                                                                                                    >  2:312515/1‑287 (MQ=255)
                                                                                                              gcacgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                                                                                                                                                   <  2:435137/288‑1 (MQ=255)
                                                                                                              gaacgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                                                                                                                                                   <  1:1022109/286‑1 (MQ=255)
                                                                                                                 cgcattgcggcCATCTGGAAGTGTTGCCAGGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGAGGATAGTCGGTATCCGGGCGGAAGGTATCGCGCACTTGCTCGCGGAGAATGATCTCGTGGCAAATAGCCGCCGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGt                                                                                                                                                               <  2:1326963/280‑1 (MQ=255)
                                                                                                                 cgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGt                                                                                                                                                               <  2:564616/289‑1 (MQ=255)
                                                                                                                 cgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGGTCTAACGGACGCAG‑AATCGACTCCAGCGCGACAAACTCCCCAAACGGCACACGATggg                                                                                                                                                               >  2:1360686/1‑288 (MQ=255)
                                                                                                                 cgcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGATGAA‑CGACG‑ACATCGGCAGATCCAAGAACGGTGCTAAAGGACGCAG‑AATGGAATCCAGAGGGACAACACAGCCAAACCGCACCAGAAggg                                                                                                                                                               >  2:1822863/1‑288 (MQ=255)
                                                                                                                 cgcaTGCGCGCCATCTGGAAGTGTTGCCATTGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGt                                                                                                                                                               <  1:1494/289‑1 (MQ=255)
                                                                                                                  gcaTTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGtt                                                                                                                                                              >  1:109715/1‑289 (MQ=255)
                                                                                                                      tCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTg                                                                                                                                                          >  1:1161828/1‑289 (MQ=255)
                                                                                                                       cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                                                                                                                                                   <  1:1830453/279‑1 (MQ=255)
                                                                                                                       cgcgCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGGTTTTGt                                                                                                                                                         >  1:1578821/1‑289 (MQ=255)
                                                                                                                              tCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCg                                                                                                                                                  >  2:479518/1‑289 (MQ=255)
                                                                                                                               cTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCATAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGa                                                                                                                                                 <  2:231678/289‑1 (MQ=255)
                                                                                                                                aggAAGTGTTGCCATGGTCCAATAGGGTTGCCAGACCGCGTATCGTTGGAGATCGTCAGCAGATGGTCGGTATCCGTGCGGAAGTTTTCGCTCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATTGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACTCAG‑AATCTACTCCAGCGTTACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGAt                                                                                                                                                <  2:1290514/288‑1 (MQ=255)
                                                                                                                                       gtgcacATGGAACAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctg                                                                                                                                          <  2:1268079/283‑3 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTGTCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctgat                                                                                                                                        >  1:1242936/1‑285 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCTCTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctgat                                                                                                                                        >  1:1015287/1‑285 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              >  2:85433/1‑204 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              <  1:85433/204‑1 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGCCAAACCGGACAAACGGGACCAGAGGGGTTTTGTTTTCGCGCTCGGccgat                                                                                                                                        >  2:205781/1‑285 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCGAAACGGCACCAGATGGTTTTCGTTATAGCGATCGGctgat                                                                                                                                        >  1:266166/1‑285 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctgat                                                                                                                                        >  2:1756517/1‑285 (MQ=255)
                                                                                                                                        ttGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctgat                                                                                                                                        >  1:898852/1‑285 (MQ=255)
                                                                                                                                         tGCCATCGAACAATAGATTTGACAGACCACGCAGCGGTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCTGAAGTTCGCGCGCACTTGCTCGCCGAGAATGCTCTCGTAGCAAAGAGCCGCATTAAGCTCAATGCCATTTGCCGCCAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATTGTTTTTGTTATAGCGATCGGctgatt                                                                                                                                       <  2:1315634/289‑6 (MQ=255)
                                                                                                                                                gACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTa                                                                                                                                   >  1:1212058/1‑286 (MQ=255)
                                                                                                                                                      tAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACgg                                                                                                                          <  1:196558/289‑1 (MQ=255)
                                                                                                                                                          tttACCAACACACGCATCGTGTGGGATAGTCAGCAGATGGTCGGTATCCGGGCGGAAGTAATCGCGCACTTGCTCGCGGAGAATGATCGCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGgcg                                                                                                                        <  2:1931528/287‑1 (MQ=255)
                                                                                                                                                          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGgcg                                                                                                                        <  1:184517/287‑1 (MQ=255)
                                                                                                                                                          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGgcg                                                                                                                        <  1:489474/287‑1 (MQ=255)
                                                                                                                                                          tttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGgcg                                                                                                                        <  2:674554/287‑1 (MQ=255)
                                                                                                                                                          attgccAAACCACGCATCGTTGGAGGTAGGCAGCGGATAGTCGGTATCCGTGCGGAAGTTATCGCGCACTTGCTCGGCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATGTGACGACAGCGGCGGCTGGATATATTGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGTACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGgcg                                                                                                                        <  2:400226/283‑1 (MQ=255)
                                                                                                                                                           ttACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGAGGGTTTTTGTTATAGCGATCGGCTGATTCGTACCGTTACGGGGCa                                                                                                                      >  2:184517/1‑288 (MQ=255)
                                                                                                                                                                  aCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGaa                                                                                                                                                                                                                              >  1:136369/1‑178 (MQ=255)
                                                                                                                                                                  aCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTAcc                                                                                                              <  2:325035/289‑1 (MQ=255)
                                                                                                                                                                  aCCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTAcc                                                                                                              <  1:741805/289‑1 (MQ=255)
                                                                                                                                                                   ccACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAg                                                                                                                                                                                               >  2:78217/1‑207 (MQ=255)
                                                                                                                                                                   ccACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAg                                                                                                                                                                                               <  1:78217/207‑1 (MQ=255)
                                                                                                                                                                   ccACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGctg                                                                                                                                          <  2:78340/260‑3 (MQ=255)
                                                                                                                                                                     acgagtCGTTGGAGATAGTCAGCAGATGGTCGGTATCCGGGCGGAAGTGATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCACTACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAACGATG‑‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACACCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAg                                                                                                           <  2:1393337/284‑1 (MQ=255)
                                                                                                                                                                         aTCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGtg                                                                                                       <  1:312515/289‑1 (MQ=255)
                                                                                                                                                                           cGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                                                                                                                                                   <  2:1184271/227‑1 (MQ=255)
                                                                                                                                                                           cGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGa                                                                                                                                                                   >  1:1184271/1‑227 (MQ=255)
                                                                                                                                                                               ggAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                 <  1:1155557/289‑1 (MQ=255)
                                                                                                                                                                               ggAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                 <  1:1756517/289‑1 (MQ=255)
                                                                                                                                                                                gagaTAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGatgatg                                                                                                 <  2:1015287/288‑1 (MQ=255)
                                                                                                                                                                                   aTAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGgtgt                                                                                             >  1:450182/1‑289 (MQ=255)
                                                                                                                                                                                     aGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGtgttg                                                                                           >  1:497221/1‑289 (MQ=255)
                                                                                                                                                                                     aGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGtgttg                                                                                           >  1:970987/1‑289 (MQ=255)
                                                                                                                                                                                       tCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAg                                                                                                                                  >  1:938674/1‑248 (MQ=255)
                                                                                                                                                                                       tCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTAcc                                                                                                              >  1:1597448/1‑268 (MQ=255)
                                                                                                                                                                                              aTAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCAcc                                                                                                                    <  1:419437/255‑1 (MQ=255)
                                                                                                                                                                                                aGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTa                                                                                <  2:1609419/289‑1 (MQ=255)
                                                                                                                                                                                                aGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAACCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGGGTTGTAGGTATCGTa                                                                                >  1:62581/1‑289 (MQ=255)
                                                                                                                                                                                                      tATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGTCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGttt                                                                                                                                                             <  1:1732151/206‑1 (MQ=255)
                                                                                                                                                                                                       aTCCGGGCGGAAGTTGTCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGtt                                                                          <  2:1242936/288‑1 (MQ=255)
                                                                                                                                                                                                         ccGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGc                                                                                                                                                                                 >  1:1982995/1‑183 (MQ=255)
                                                                                                                                                                                                         ccGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGc                                                                                                                                                                                 <  2:1982995/183‑1 (MQ=255)
                                                                                                                                                                                                          cggacggaAGTTATCGCCTAACTGCTCGCCCAGACTGAGCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGGTCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGc                                                                      <  2:1578821/289‑1 (MQ=255)
                                                                                                                                                                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGAt                                                                                                                                                >  1:405962/1‑213 (MQ=255)
                                                                                                                                                                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGc                                                                                                                                            >  2:154082/1‑217 (MQ=255)
                                                                                                                                                                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGc                                                                                                                                            <  1:154082/217‑1 (MQ=255)
                                                                                                                                                                                                            ggCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAACAACGGTGCTAACGGACTCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGGGATCGGCTGATACTGATCGGTACTGAGCACCTTTTCCCCGCGGGATCAGGGCGTTGTCTGAATAGTCACGGTTCt                                                                        >  2:1679696/1‑285 (MQ=255)
                                                                                                                                                                                                                        cgcgCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGAcgcgc                                                        <  2:109715/289‑1 (MQ=255)
                                                                                                                                                                                                                                       cGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGCTATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGAAG‑AATCGACTCAAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAACGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGTTTCTGCTTATTGACACGCGCTGCGAACATCCAGGt                                         >  2:1210641/1‑289 (MQ=255)
                                                                                                                                                                                                                                                tctcGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcga                                <  2:898852/289‑4 (MQ=255)
                                                                                                                                                                                                                                                 ctcGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgag                               <  1:1346677/289‑5 (MQ=255)
                                                                                                                                                                                                                                                 atcGGAGCAAATAGCCGCAGTAAGCTCAATACCATTTGACGACATCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGAAG‑ACATCCGCATGTCAAAGAAGGGTGCTAACGGACGCAA‑AATCGATTCCACCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGGATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgag                               <  2:1935343/288‑5 (MQ=255)
                                                                                                                                                                                                                                                   cGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGtgatga                                                                                                   <  1:1308430/219‑1 (MQ=255)
                                                                                                                                                                                                                                                      aGCAAAGAGCCGCACTAAGCTGAATACCATTTGCCGACAGCGCAGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACAACGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTGATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAgcgagctac                           <  2:581097/288‑9 (MQ=255)
                                                                                                                                                                                                                                                          aaTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAg                                                                                                           <  2:165024/204‑1 (MQ=255)
                                                                                                                                                                                                                                                           aTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGt                                                                                                        <  2:1118201/206‑1 (MQ=255)
                                                                                                                                                                                                                                                           aTAGCCGCAGTAAGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGt                                                                                                        >  1:1118201/1‑206 (MQ=255)
                                                                                                                                                                                                                                                                      aaGCTCAATACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAAc             <  1:483124/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aTACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCa   <  2:950200/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aTACCATTGGCCGACAGCGGCGGCGGGGTATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCa   <  2:408354/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              tACCATTTGCCGACAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑CGACG‑ACATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATCGACTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCTGATTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTcctt  >  1:1275033/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                       
ACACCTCGCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCACCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCGCTCAGCGGCGGCTGGATATATGGCCCACGGCTGAA‑GCTGC‑TCATCGGCAGATCAAAGAACGGTGCTAACGGACGCAG‑AATGCTCTCCAGCGGGACAAACTCGCCAAACGGCACCAGATGGTTTTTGTTATAGCGATCGGCACTTTCGTAGCTGTACGGCGCACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGGCTGCTACCTTTATCACGCAACTCACCGTCCAG  >  CP042583/561906‑562464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A