Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,801,420 T→C intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,801,4200TC98.9% 415.8 / NA 178intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (90/86);  minor base A (1/1);  total (91/87)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 179 total aligned reads displayed.

GCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGTTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAAGCTCTGCCCGGTGGTGTAATTTGCGCCCTCGCTACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAG  >  CP042583/1801141‑1801704
                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                            
gCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTggg                                                                                                                                                                                                                                                                                     <  1:945195/289‑1 (MQ=255)
gCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTggg                                                                                                                                                                                                                                                                                     >  2:1345217/1‑289 (MQ=255)
gCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTggg                                                                                                                                                                                                                                                                                     <  1:145632/289‑1 (MQ=255)
    gtggtCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGa                                                                                                                                                                                                                                                                                 >  1:1216169/1‑289 (MQ=255)
            gTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGa                                                                                                                                                                                                                                                                         >  1:1493290/1‑289 (MQ=255)
                 tgggcCGTGGTTGCACAATCTCGACCGGCATTGGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGc                                                                                                                                                                                                                                                                    <  2:62011/286‑1 (MQ=255)
                 tGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCg                                                                                                                                                                                                                                                                     >  1:1991233/1‑288 (MQ=255)
                  gggcCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACGGGTTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGcc                                                                                                                                                                                                                                                                   <  2:1094138/287‑1 (MQ=255)
                      cGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACa                                                                                                                                                                                                                                                               >  2:698685/1‑289 (MQ=255)
                         ggTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATaa                                                                                                                                                                                                                                                            <  1:991859/289‑1 (MQ=255)
                          gTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTGTTCATGCCGACCATAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTAGTCTGGGTTGCACTGAGGATTCGCCAACATaaa                                                                                                                                                                                                                                                           >  1:1068162/1‑289 (MQ=255)
                             gCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAgcc                                                                                                                                                                                                                                                        >  1:1676634/1‑289 (MQ=255)
                                  aTCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGa                                                                                                                                                                                                                                                                         <  1:1284482/267‑1 (MQ=255)
                                   tctcGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATc                                                                                                                                                                                                                                                  <  1:1822623/289‑1 (MQ=255)
                                     tcGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCATCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                <  1:158376/289‑1 (MQ=255)
                                             cATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCaac                                                                                                                                                                                                                                        >  1:1643188/1‑288 (MQ=255)
                                             cATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAAAATCCA‑CGCACCTCACGGCGCTATTCTGGGTTGAACTGTGGATTCGACAACATAAAGACGCACTCCCCTAACaa                                                                                                                                                                                                                                         >  2:537964/1‑288 (MQ=255)
                                              aTTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCaac                                                                                                                                                                                                                                        <  1:1748538/288‑2 (MQ=255)
                                               tttGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCAACTCACTGCGATATTCTGGCGTTAACTGCGTATTGGCCAACATAACGCCGCCAACCACTacccacg                                                                                                                                                                                                                                       >  2:802773/1‑282 (MQ=255)
                                                    aGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCaacgactgcc                                                                                                                                                                                                                                 <  1:1352395/289‑9 (MQ=255)
                                                    aGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCaacgactgcc                                                                                                                                                                                                                                 <  1:676971/289‑9 (MQ=255)
                                                       aCTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTCAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGCCATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CCCCCCTCACATCGCTACTCTCGGTGGAACTGTGGATCGCCCAAAATAAACGCGCCACTCTCTATCCACGACTGCCCgg                                                                                                                                                                                                                              >  2:372535/1‑289 (MQ=255)
                                                       aCTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCgg                                                                                                                                                                                                                              <  1:24114/289‑1 (MQ=255)
                                                       aCTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCgg                                                                                                                                                                                                                              >  1:1710642/1‑289 (MQ=255)
                                                        agcggTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCggt                                                                                                                                                                                                                             <  1:714309/286‑1 (MQ=255)
                                                                 gTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGAGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                <  1:418319/261‑1 (MQ=255)
                                                                    cattttttttgtagTTCCGGTGGTGGGCGTGCGCTTGTGGCTAGAACGACGCGGGAGGAAAAAGCCGGATGCTCAGGCGTAACACCCTTGCCCTGGCTAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATCCGACGCTTGGGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCCCTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACCTAACGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTgc                                                                                                                                                                                                                 <  2:25946/276‑1 (MQ=255)
                                                                     aTTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                >  2:1259889/1‑257 (MQ=255)
                                                                     aTTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCg                                                                                                                                                                                                                               >  1:1504730/1‑274 (MQ=255)
                                                                      ttCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTgcg                                                                                                                                                                                                                <  1:1012806/288‑1 (MQ=255)
                                                                               gggTTCGGGTGGGGGGCGGGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATAATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTccgaa                                                                                                                                                                                                       <  2:1402209/287‑5 (MQ=255)
                                                                                 gTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGa                                                                                                                                                                                                                                                                         <  2:103727/220‑1 (MQ=255)
                                                                                 gTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGa                                                                                                                                                                                                                                                                         >  1:103727/1‑220 (MQ=255)
                                                                                     tggtggtggGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTccgaa                                                                                                                                                                                                       >  1:1355451/1‑278 (MQ=255)
                                                                                        tggtggGCGTGCGCGGGTGGCTGAAGCGACGCGGGAAGAAAAAGCCGCATCATCAGGCGTAAAACCATTGCCCTGGATAAGTCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTccgaac                                                                                                                                                                                                      <  2:423949/280‑6 (MQ=255)
                                                                                         ggtggGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCcaca                                                                                                                                                                                             <  1:1783981/288‑1 (MQ=255)
                                                                                                  gcgcTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCAcaccctgtccct                                                                                                                                                                                   >  1:423949/1‑281 (MQ=255)
                                                                                                  gcgcTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGc                                                                                                                                                                                    <  2:569556/288‑1 (MQ=255)
                                                                                                    gcTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTgg                                                                                                                                                                                 <  1:155056/289‑1 (MQ=255)
                                                                                                        gtggCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                <  2:1635087/222‑1 (MQ=255)
                                                                                                        gtggCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                >  1:1635087/1‑222 (MQ=255)
                                                                                                             tgtaaCGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                >  2:1514490/4‑217 (MQ=255)
                                                                                                                     cgcgGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTCCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCCCATGCGCTgc                                                                                                                                                                 >  2:837216/1‑288 (MQ=255)
                                                                                                                                    ccGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                <  2:1002764/194‑1 (MQ=255)
                                                                                                                                    ccGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCa                                                                                                                                                                                                                                                >  1:1002764/1‑194 (MQ=255)
                                                                                                                                                   tAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCa                                                                                                                                                                               >  2:1442050/1‑244 (MQ=255)
                                                                                                                                                   tAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCa                                                                                                                                                                               <  1:1442050/244‑1 (MQ=255)
                                                                                                                                                            tGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAgccg                                                                                                                                                                                                                                                       >  2:1637312/1‑163 (MQ=255)
                                                                                                                                                               ccTGGATAAGGCGTTCGCGCAGCATACGACATCCAGAGTACCCGGCCTGATACGGCGTTTTTGGGGCTTTTCATGCGGACCAAAATATTACCGCATGAAACATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCtt                                                                                                                       <  2:1493290/288‑1 (MQ=255)
                                                                                                                                                                   gATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTgg                                                                                                                                                                                 >  1:1100202/1‑226 (MQ=255)
                                                                                                                                                                   gATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTgg                                                                                                                                                                                 <  2:1100202/226‑1 (MQ=255)
                                                                                                                                                                   gATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACg                                                                                                                   >  1:533630/1‑288 (MQ=255)
                                                                                                                                                                    ttAAGGCGTTCGGGCCGCATCCGACATCCGTAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGt                                                                                                                  <  2:1991233/287‑1 (MQ=255)
                                                                                                                                                                        ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAgccgcc                                                                                                                                                                                                                                                     <  1:1908740/153‑1 (MQ=255)
                                                                                                                                                                        ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAgccgcc                                                                                                                                                                                                                                                     >  2:1908740/1‑153 (MQ=255)
                                                                                                                                                                        ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTc                                                                                                                 >  1:679106/1‑285 (MQ=255)
                                                                                                                                                                         gCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTc                                                                                                                 >  2:1141749/1‑284 (MQ=255)
                                                                                                                                                                         gCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTg                                                                                                             <  2:736765/288‑1 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTgcg                                                                                                                                                                                                                >  1:38459/1‑185 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGACCAAAGCCACACCACCAGGCTGGCACTCTCCTGCGTTGCGCCAACACCCCGCAAGGGAAACGAAGGCGCCGCGGCGGCCTGCACGTCCCAGTCac                                                                                                         >  2:1804907/1‑287 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAATAAAGCca                                                                                                                                                                                               <  1:917402/202‑1 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCca                                                                                                                                                                                               >  2:917402/1‑202 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCAcacca                                                                                                                                                                                          <  1:86088/207‑1 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAAtcga                                                                                                                                         <  1:14953/256‑4 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                         >  1:794218/1‑288 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                         >  1:301374/1‑288 (MQ=255)
                                                                                                                                                                             tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCCCATGCGTTGCGCCAAAACGCCGCCAGGGAATCCAAGGCCCCGCCTCGGGCTTCACGTCGCTGCCAt                                                                                                         >  2:1754605/1‑288 (MQ=255)
                                                                                                                                                                               gcgcCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCa                                                                                                      <  2:679106/289‑1 (MQ=255)
                                                                                                                                                                                 gccgcATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATg                                                                                                    <  1:1804907/289‑1 (MQ=255)
                                                                                                                                                                                             aTCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATtggc                                                                                        >  2:706885/1‑289 (MQ=255)
                                                                                                                                                                                               ccGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCCCCGCGTCGGGCTTCACGTCGCTGCCATCCATGCCAGTCATtggcgt                                                                                      >  2:107775/1‑289 (MQ=255)
                                                                                                                                                                                                    gTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATtggcgtggcg                                                                                  <  1:1754605/288‑1 (MQ=255)
                                                                                                                                                                                                     tagcATGCCTTATACGACGCCTATGAATCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGAACCTGACTGCGCTATTCTGGGTTGAACTGTGGATTAGCCCACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTACGAAAAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                <  2:128700/286‑1 (MQ=255)
                                                                                                                                                                                                      agcATGCCTGAACCCACACTTGTGCGTATTTTAATGCCGACCAAAATATTACCCAATAAAATATCCC‑CCCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                <  2:101094/286‑1 (MQ=255)
                                                                                                                                                                                                          tGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGcc                                                                            >  1:1880374/1‑288 (MQ=255)
                                                                                                                                                                                                            ccTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCa                                                                         >  1:1213849/1‑289 (MQ=255)
                                                                                                                                                                                                              tGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCCCCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCGCCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAgg                                                                       <  1:308352/289‑1 (MQ=255)
                                                                                                                                                                                                                      cgCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGCAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGAGTGGCGATCGCCCCAGGCGCGACt                                                                >  1:1057591/1‑288 (MQ=255)
                                                                                                                                                                                                                      cgCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACt                                                                >  1:1345530/1‑288 (MQ=255)
                                                                                                                                                                                                                      cgCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACt                                                                >  1:1092081/1‑288 (MQ=255)
                                                                                                                                                                                                                         ttGGGCGCCTTTTCATGCCGACAAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGATATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCg                                                             <  2:86833/288‑1 (MQ=255)
                                                                                                                                                                                                                                tCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCaa                                                     <  1:372535/289‑1 (MQ=255)
                                                                                                                                                                                                                                             aCCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTc                                                                                                                             >  1:1381476/1‑204 (MQ=255)
                                                                                                                                                                                                                                             aCCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                         <  2:1364369/224‑1 (MQ=255)
                                                                                                                                                                                                                                             aCCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                         <  1:1902795/224‑1 (MQ=255)
                                                                                                                                                                                                                                             aCCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                <  1:1009086/249‑1 (MQ=255)
                                                                                                                                                                                                                                             aCCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTg                                        >  1:898102/1‑289 (MQ=255)
                                                                                                                                                                                                                                               cAAAAAATTACCCAATG‑AATATTCACCGCACCGCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCGACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAc                                      <  2:1260960/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aaaaTATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                     <  1:698685/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aaaaTATTACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                     <  1:1333998/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       tACCCAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATTCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGCCTGCGTTCACCAAACTCTTACGCCTTACCAGcccc                               >  2:1784309/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         cccAATGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAACTCCAg                             >  1:1163631/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            aaTGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAgcgc                          >  1:653829/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            aaTGAAATATCCA‑CGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGATCCGCATCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAACGCCCCAGGCGCGACCTCGTTCACCCAAACCTTATGCCCGACCAGCCCCCgcgc                          >  2:402514/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              tGAAATATCCA‑CGAACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCaa                                                     <  1:809168/259‑1 (MQ=255)
                                                                                                                                                                                                                                                                       ccccGCACCTCACTCCGCTATTCTGGGTTGAACTGTGAATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAGGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTgg               <  2:368379/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAAc          <  2:1497085/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 cACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                     <  2:1708594/257‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    tGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCAcc     >  1:563649/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                     gcgcTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACGACTGCCCGGTGGTGTAATTTGCGCCCTCCGAACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAg  >  2:1198633/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                            
GCTGGTGGTCAGGTGATTGCGCCGTGGTTGCACAATCTCGACCAGCATTTGAAGCACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCA‑CGCACCTCACTGCGTTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAAGCTCTGCCCGGTGGTGTAATTTGCGCCCTCGCTACAAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAG  >  CP042583/1801141‑1801704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A