Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 599,647 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583599,6470GC100.0% 702.0 / NA 296intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (142/154);  total (142/154)
*CP042583599,6480CG99.0% 696.3 / ‑5.4 296intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base G (138/154);  minor base T (3/0);  total (142/154)
Fisher's exact test for biased strand distribution p-value = 1.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583599,6490TA99.7% 700.8 / NA 296intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (140/154);  minor base G (1/0);  total (142/154)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 296 total aligned reads displayed.

CGCCATTGCGCCTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGGCTACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGAACTCACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGCAGT  >  CP042583/599374‑599916
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                            
cgccattgcgccTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGcc                                                                                                                                                                                                                                                                 >  1:2702366/1‑289 (MQ=255)
cgccattgcgccTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCCGGCGTCTTGGCCAGTTTTACTCACCAGCGAACCGGCAATTGc                                                                                                                                                                                                                                                                  >  1:664601/1‑288 (MQ=255)
    attgcgccTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATCGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGAAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCa                                                                                                                                                                                                                                                             <  2:336271/289‑1 (MQ=255)
     ttgcgccTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCCGCGTGCCGGAGCCGGGGGCCTGGCTCTTTTTACCCACCAGCCAACCGGCAATTGCCATCa                                                                                                                                                                                                                                                             >  2:1891295/1‑288 (MQ=255)
      tgcgccTGCGTGTTTAATTTTTTGACCGCGTCTTTCAGCGCTGGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGATTCATATTCAGTTCTCGCTCAATATCATCCGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCAcc                                                                                                                                                                                                                                                           <  2:1022807/289‑1 (MQ=255)
          ccTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTCCGTTGGCAGCGTGCCGGAGCTGGCGGCCTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGa                                                                                                                                                                                                                                                       >  1:1083575/1‑289 (MQ=255)
                             agcgactacttTCAGCACATGAACGACAAGTGTTGGATCGAAATGCTCAAGTTGTTTACGAATCATAGTAAGTGCTCACTCAAGATCATCAGGAGAGATATACCGCCACCGGAACAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGAGTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCGTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGcgacc                                                                                                                                                                                                                                    <  2:1515032/281‑1 (MQ=255)
                                 gCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACa                                                                                                                                                                                                                                <  2:1649462/289‑1 (MQ=255)
                                             gcCTGAAGGACAAGGTTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGGGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGaa                                                                                                                                                                                                                     <  2:2702366/288‑1 (MQ=255)
                                             gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGTGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAAc                                                                                                                                                                                                                    <  2:1384424/289‑1 (MQ=255)
                                             gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGaa                                                                                                                                                                                                                     <  2:1294924/288‑1 (MQ=255)
                                             gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGaa                                                                                                                                                                                                                     <  1:232053/288‑1 (MQ=255)
                                             gcCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGGTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGaa                                                                                                                                                                                                                     <  2:985920/288‑1 (MQ=255)
                                               cTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATaa                                                                                                                                                                                                                                                    >  2:576170/1‑255 (MQ=255)
                                               cTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATaa                                                                                                                                                                                                                                                    <  1:576170/255‑1 (MQ=255)
                                                 gAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCa                                                                                                                                                                                                                <  1:1835060/289‑1 (MQ=255)
                                                            gtTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTGACCAGCGAACCGGCAATTGCCATCACCCGGGTAATCACCCCGAAGCGAACGACACACAAGCAGAAACCCAGCAAACACtt                                                                                                                                                                                                      >  2:1254232/1‑288 (MQ=255)
                                                             tggattgcaaTAGCGCCAGTTGTTTACGACTCAGATTCACTGCTCCCTCAATATCATCAGGAGGGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTcc                                                                                                                                                                                                    <  2:549659/281‑1 (MQ=255)
                                                              tGGTTCGCATAGCGCCAGTTGTTTACGACTCAGATTCAGTGCTCACTAAATATCATCAGGAGAGATATTCAGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTcc                                                                                                                                                                                                    <  2:2416254/288‑1 (MQ=255)
                                                                gTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCACAACGGCCGTAAACATTTCCaca                                                                                                                                                                                                 >  2:803393/1‑287 (MQ=255)
                                                                   cGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACg                                                                                                                                                                                              <  1:2043657/289‑1 (MQ=255)
                                                                     aaTAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGga                                                                                                                                                                                            >  2:1851918/1‑289 (MQ=255)
                                                                                          cTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGCTAATCACCCCGAAGCGACCGACAAACATGCAGAACGACAGTAAACAGTTCCCGAACGGAGAGTTGGCGCTTAATCCGGcc                                                                                                                                                                       >  2:437628/1‑288 (MQ=255)
                                                                                          cTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCa                                                                                                                                                                       >  1:792328/1‑289 (MQ=255)
                                                                                             atatTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTaaa                                                                                                                                                                                                           <  1:2732437/250‑1 (MQ=255)
                                                                                                    gTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCGTAATCCGGCAA‑AGGCGCTg                                                                                                                                                             >  1:2065915/1‑288 (MQ=255)
                                                                                                     tGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGACCGGAAAGTTGACGCTTAATCCGGCAA‑CGgcgcgtc                                                                                                                                                            >  2:2085934/1‑285 (MQ=255)
                                                                                                     tGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAAAAGTTCCAGAACGGAGAGGTGGGGCTTAAACCGTGCA‑AGGCGCTGc                                                                                                                                                            >  2:1326491/1‑288 (MQ=255)
                                                                                                     tGCTCACTCAAGATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTTCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCTAACCGTCAATTGCCCTCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACCGCGAGTTGGCGCTTAATCCGGCCA‑ATGCCCtcc                                                                                                                                                            >  2:868208/1‑286 (MQ=255)
                                                                                                       ctcactcaATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCg                                                                                                                                                          <  2:1084452/288‑1 (MQ=255)
                                                                                                          actcaATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCgttgt                                                                                                                                                      >  2:740989/1‑289 (MQ=255)
                                                                                                                      caGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGACCCGGCAATTGCCACCACCGGGATTATCAACCCGAAGCGACAGACAAACATGCAGAACGCCAGTAAACAGCTCCAGAACGGAGAGTTGACGCGTACTACGCCAACAGACAC‑GCCGATGTTGTTAGacgcgg                                                                                                                                          >  2:2310282/1‑289 (MQ=255)
                                                                                                                      caGGAGAGATATTCCGCCACCGGAACAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGcggcgg                                                                                                                                          >  1:2271877/1‑289 (MQ=255)
                                                                                                                        ggAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCCGTGCGCCAACCAGCCAAACGGTGCCGATGAACAGG‑CCGACAAACA‑TGGGGCACTGCGTTGGCATCGTGCCGGCACTGGCGGCTTGGCTCTTCTTACTCACCAGCTGACCGTCAATAGCCAGCACCGGGATAATCCCGCCGAAGCGACCGACAAACATGCAGAACGCAAGGAAAACGTTACCGGACGGCGCGGCGGCGCGTAATGCGGCGA‑ACGGGGAGACGCTGTTGTTGGCGGCAGac                                                                                                                                        >  2:1539233/1‑288 (MQ=255)
                                                                                                                          agagaTATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACg                                                                                                                                                                                              >  2:2692441/1‑234 (MQ=255)
                                                                                                                          agagaTATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatg                                                                                                                                       <  1:2310282/288‑3 (MQ=255)
                                                                                                                            agaTATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTaaa                                                                                                                                                                                                           <  2:1200793/219‑1 (MQ=255)
                                                                                                                            agaTATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTaaa                                                                                                                                                                                                           >  1:1200793/1‑219 (MQ=255)
                                                                                                                             gaatagccGCAAACGGACCAGGGCCCAAGGCGGGGATAAAGGTCAGTGCGGCAACAAGGAACACGGTGCCGATCACCACG‑CCACCAAACA‑GCGGGCCGTGCGTTGGCAGCGGGCCGGAGGTGGGGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAAGCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    <  2:262819/282‑6 (MQ=255)
                                                                                                                             gaTATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    <  1:1891295/288‑6 (MQ=255)
                                                                                                                              atcgtCCGCCACCGGACCAAGCGCCCGGGCAGGGATAAAGGTCAGTGCGCCAACCGGCAACACGGGTCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgacacg                                                                                                                                  <  2:1420080/285‑8 (MQ=255)
                                                                                                                              atatTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCg                                                                                                                                                          <  1:1127761/265‑1 (MQ=255)
                                                                                                                              atatTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCg                                                                                                                                                          >  2:1127761/1‑265 (MQ=255)
                                                                                                                              atatTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgatctg                                                                                                                                  >  1:359691/1‑282 (MQ=255)
                                                                                                                              atatTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgacacg                                                                                                                                  >  1:2111719/1‑282 (MQ=255)
                                                                                                                               tatTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgacacg                                                                                                                                  <  2:175852/288‑8 (MQ=255)
                                                                                                                                        aCCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTaa                                                                                                                                                                              <  2:1158274/236‑1 (MQ=255)
                                                                                                                                        aCCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTaa                                                                                                                                                                              >  1:1158274/1‑236 (MQ=255)
                                                                                                                                                 aGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    >  1:1560904/1‑263 (MQ=255)
                                                                                                                                                    gcCAGGGCAGGGATAAAGGTCAGTCGACAAACCAGCAACAGGGTGCCGATTACCAGG‑CAAACAAGCC‑GCGGGCCGTGCGTGGGCAGCGTGACGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTaaaa                                                                                                             <  2:1604174/288‑1 (MQ=255)
                                                                                                                                                          gcagggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCCCTTCGCTAAAACCATg                                                                                                        <  1:2692950/287‑1 (MQ=255)
                                                                                                                                                          gcagggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATg                                                                                                        <  1:2162655/287‑1 (MQ=255)
                                                                                                                                                          gcaaggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATg                                                                                                        <  1:105383/287‑1 (MQ=255)
                                                                                                                                                              ggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATaa                                                                                                                                                                                                                                                    <  2:2522883/144‑1 (MQ=255)
                                                                                                                                                              ggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGgcgc                                                                                                                                                               <  1:1377137/228‑1 (MQ=255)
                                                                                                                                                              ggATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGgcgc                                                                                                                                                               <  1:2682769/228‑1 (MQ=255)
                                                                                                                                                              ggAAAAAGGTCAGTGCGCCAAACCGCAACACGGTGCCGATGAACAGG‑CCAACAAACG‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGc                                                                                                   <  2:136788/288‑1 (MQ=255)
                                                                                                                                                               gATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGc                                                                                                   <  1:2518152/287‑1 (MQ=255)
                                                                                                                                                                aTAAAGGCCAGTGCGCAAACCAGCAACACGGGGCCGCTTAACAGG‑CAAACAAACC‑GCGGGCCGTGCGTTGGCAGCGGGCCGGGGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCa                                                                                                 <  2:1797995/288‑1 (MQ=255)
                                                                                                                                                                        cAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCa                                                                                                                                                                       >  1:1969423/1‑211 (MQ=255)
                                                                                                                                                                         cgtgccgcAACCAGCAAAACGGTGCCGATTAACAGG‑CAGACAACCA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGGGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCa                                                                                       <  2:644440/282‑1 (MQ=255)
                                                                                                                                                                         aGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGcc                                                                                                                                                                                                                                                                 <  2:688533/120‑1 (MQ=255)
                                                                                                                                                                         aGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGcc                                                                                                                                                                                                                                                                 >  1:688533/1‑120 (MQ=255)
                                                                                                                                                                         aGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    <  2:1823763/244‑6 (MQ=255)
                                                                                                                                                                          gTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    >  1:713880/1‑238 (MQ=255)
                                                                                                                                                                            gcgcCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCa                                                                                       <  1:411211/286‑1 (MQ=255)
                                                                                                                                                                                cAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAC‑AGGCGCTg                                                                                                                                                             >  1:989999/1‑212 (MQ=255)
                                                                                                                                                                                cAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGAGACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGCTGAGCACGGCGCt                                                                                >  1:1335992/1‑289 (MQ=255)
                                                                                                                                                                                cAACCACAAACCCGGCGTCGATT‑ACAGGACCCACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGACTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCGCCCCGAAGCGACCGACAGACATGCAGAACGCCAGTAAACAGTTCCGGAACGGAGAGTTGGCGCTTAATCCGGCAA‑CGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCt                                                                                <  2:664601/289‑1 (MQ=255)
                                                                                                                                                                                              gTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCa                                                                                       >  1:1803638/1‑268 (MQ=255)
                                                                                                                                                                                                 ccGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTAc                                                                                                                            <  1:1872070/228‑1 (MQ=255)
                                                                                                                                                                                                 ccGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAAACCTGCGGGCCAGGGGTGAGCATGGCGCCACGGCCGGCGTCGGtc                                                                >  2:2034685/1‑288 (MQ=255)
                                                                                                                                                                                                   gATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGtcatc                                                             <  1:2599244/289‑1 (MQ=255)
                                                                                                                                                                                                   gATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGtcatc                                                             <  1:1500970/289‑1 (MQ=255)
                                                                                                                                                                                                         cAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGCTAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTACGGCGTGGGtcatacgtcc                                                        >  2:265540/1‑282 (MQ=255)
                                                                                                                                                                                                           gg‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCAc                                                                                                                       <  2:2551831/223‑1 (MQ=255)
                                                                                                                                                                                                           gg‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCAc                                                                                                                       >  1:1322428/1‑223 (MQ=255)
                                                                                                                                                                                                           gg‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCAc                                                                                                                       >  1:1531329/1‑223 (MQ=255)
                                                                                                                                                                                                               caacaaACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAAcg                                                   >  1:1757410/1‑288 (MQ=255)
                                                                                                                                                                                                                  caaacagGCGGGCGGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAAcgccg                                                <  2:2156922/289‑1 (MQ=255)
                                                                                                                                                                                                                       a‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTg                                                                                                                                                             >  2:1188405/1‑174 (MQ=255)
                                                                                                                                                                                                                           gggCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAg                                                                                                                                                >  2:474432/1‑184 (MQ=255)
                                                                                                                                                                                                                           gggCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAg                                                                                                                                                <  1:474432/184‑1 (MQ=255)
                                                                                                                                                                                                                            ggCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGatgaca                                                                                                                                    >  2:2722143/1‑190 (MQ=255)
                                                                                                                                                                                                                                gTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAg                                                                                                                                                >  2:322561/1‑179 (MQ=255)
                                                                                                                                                                                                                                gTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAg                                                                                                                                                <  1:322561/179‑1 (MQ=255)
                                                                                                                                                                                                                                 tGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCCCCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGCGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTCGTGGCGGATGACACGGCTGCCAGCACGTAGCGAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACCTCCGGCGTCGGTCATCATCGACAACGGCGCCGCCACCAGCAccc                                 >  2:1542280/1‑288 (MQ=255)
                                                                                                                                                                                                                                 tGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGt                                                                     >  2:966247/1‑253 (MQ=255)
                                                                                                                                                                                                                                 tGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGt                                                                     <  1:966247/253‑1 (MQ=255)
                                                                                                                                                                                                                                 tGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCcgcg                                              >  1:441835/1‑276 (MQ=255)
                                                                                                                                                                                                                                           gCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATg                                                                                                        <  1:161205/208‑1 (MQ=255)
                                                                                                                                                                                                                                            cGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAATATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCCCCCATCAGCCCCAGCGTCGGGGTa                      >  2:844189/1‑289 (MQ=255)
                                                                                                                                                                                                                                            cGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCa                                                                                                 <  1:740430/214‑1 (MQ=255)
                                                                                                                                                                                                                                              tGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTaa                     >  1:1772392/1‑288 (MQ=255)
                                                                                                                                                                                                                                                       tGGCGGCTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGc           <  1:1271046/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        ggcggcTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCAGCAGCCCCCGCGTCGGGGTAACCAGAATTGcc          >  2:2039821/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         gcggcTTGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCa         >  1:649064/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              ttGGCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCAACAGCCCCAGCGCCGGGGTCACCAGAATTGCCAGTGcc    >  2:729522/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               tGGCTCTAGTTACTCCCCAGCGAACCGGCAATTGACATCACCGGGATAATGACCCCGACGCGACCGAACAACATGCAGAACGGAAGTAAACAGTTCCAGAGCGGGGTGTTGGCGCTGAAGCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGACACGGCGTAGAGCACGTCGCTAAAACCAGGCGGGCCAGGGGTGAGCATGGCGCTACGTGCGGCGTCGGTCATCAGCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGcag   <  2:2265271/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                ggCTCTTTTTACTCACCAGCGAACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGATGAGACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGcagt  <  1:25447/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                            
CGCCATTGCGCCTGCGGGTTTAATTTTTTCACCGCTTCTTTCAGCGCCTGAACGACAAGTGTTGGTTCGAATAGCGCCAGTTGTTTACGACTCATATTCAGTGCTCACTCAATATCATCAGGAGAGATATTCCGCCACCGGACCAAGCGCCAGGGCAGGGATAAAGGTCAGTGCGCCAACCAGCAACACGGTGCCGATTAACAGG‑CCAACAAACA‑GCGGGCCGTGCGTTGGCAGCGTGCCGGAGCTGGCGGCTTGGCTCTTTTTACTCACCAGGCTACCGGCAATTGCCATCACCGGGATAATCACCCCGAAGCGACCGACAAACATGCAGAACGCCAGTAAACAGTTCCAGAACGGAGAGTTGGCGCTTAATCCGGCAA‑AGGCGCTGCCGTTGTTGTTAGCGGCGGAACTCACGGCGTACAGCACTTCGCTAAAACCATGCGGGCCAGGGTTGAGCATGGCGCTACGTCCGGCGTCGGTCATCATCGCCAACGCCGCGCCCATCAGCACCAGCGTCGGGGTAACCAGAATTGCCAGTGCAGT  >  CP042583/599374‑599916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A