Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 604,077 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583604,0770GC99.7% 805.1 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (195/146);  total (196/146)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP042583604,0780CG99.4% 807.6 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base G (195/144);  minor base T (0/2);  total (196/146)
Fisher's exact test for biased strand distribution p-value = 1.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583604,0790TA99.7% 808.1 / NA 342intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base A (196/144);  total (196/146)
Fisher's exact test for biased strand distribution p-value = 4.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 342 total aligned reads displayed.

GAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAAGCTAG‑CCTGGCTTGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGGCTCATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGC  >  CP042583/603802‑604346
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                           
       ttATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCAc                                                                                                                                                                                                                                                           >  1:2445279/1‑289 (MQ=255)
        tATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCAcg                                                                                                                                                                                                                                                          <  1:2661714/289‑1 (MQ=255)
                cTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCAcgc                                                                                                                                                                                                                                                         >  2:684918/1‑282 (MQ=255)
                 tacaaattgcgtcAAATACAATAAATTGCAGTGAATAGGTAGGCATGATACGACGCGGCGAGCATCGCACAAGGCATCGTTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACCCGCCATTGCGCCCCGGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGTAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGa                                                                                                                                                                                                                                                 <  2:1886838/277‑1 (MQ=255)
                 tACGAATTTGTGAAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCCTCCAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCATGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCACCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGTTGTCTGATCGGCAATCACGCCCGCCAGa                                                                                                                                                                                                                                                 <  1:2095093/289‑1 (MQ=255)
                 tACAAATTTGGGCAAAGGCAAAAAATTGAAGGAAATACGTAGGCCAGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTAGTAAGACTCCAGCGCCAGCGCTCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGa                                                                                                                                                                                                                                                 <  2:2663564/289‑1 (MQ=255)
                   cAAATTTGTGCAAATTCAATAAATTGCAGGCAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCAGCCAGATa                                                                                                                                                                                                                                               >  1:2399923/1‑289 (MQ=255)
                                       aaaTTGCAGGAAATACGTAGGCCTGATAAGAGGCGTCAAGCGTGGCATCAGGGATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATGTCGGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGaaa                                                                                                                                                                                                                           <  2:1988877/289‑1 (MQ=255)
                                                          ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATcgcg                                                                                                                                                                                                                                  <  2:226744/263‑1 (MQ=255)
                                                                      cgcgTCAAGCGTCGCAGCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGt                                                                                                                                                                                            <  1:2112557/289‑1 (MQ=255)
                                                                        cgTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCACCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTc                                                                                                                                                                                           >  1:59058/1‑288 (MQ=255)
                                                                          tCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGGTAATACCCAGGTcac                                                                                                                                                                                         >  2:945398/1‑288 (MQ=255)
                                                                           agtggggcGCCTCAGGCCGCGGTGCTGAGCTATAGAGAGTGCGGGGCCAGGGAACGGTTTCTGAAGTTCAGCGTCGGATAGAGCCAAAGCATCAGTACCTGTGCTACACCGGCAAGTGCGCCCAAGGTAATTTGATCAAATACTTCAATATATGCATGGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTcaca                                                                                                                                                                                        <  2:1059381/281‑1 (MQ=255)
                                                                                   gCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCACGCCAGATAGTTAGCGATCGCGCCAGAAAGCAGCATGTAGCGGCCGGTTAAAATGCCGGTCGCACCgggggtg                                                                                                                                                                               >  2:1602443/1‑286 (MQ=255)
                                                                                                    tGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAAttt                                                                                                                                                               >  1:1983140/1‑288 (MQ=255)
                                                                                                    tGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAAttt                                                                                                                                                               >  1:2273250/1‑288 (MQ=255)
                                                                                                                aCTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCGGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCaa                                                                                                                                                   >  2:642372/1‑288 (MQ=255)
                                                                                                                aCTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTgcgacattgcaa                                                                                                                                                   >  1:2258852/1‑277 (MQ=255)
                                                                                                                  tCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGGTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCg                                                                                                                                                >  1:1928259/1‑289 (MQ=255)
                                                                                                                    cagcgccagcgcGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCggg                                                                                                                                              <  1:1824539/289‑1 (MQ=255)
                                                                                                                     agcgccagcgcGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGa                                                                                                                                                                                                                                                 <  2:91135/189‑1 (MQ=255)
                                                                                                                     agcgccagcgcGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCggg                                                                                                                                              >  1:1797154/1‑288 (MQ=255)
                                                                                                                     agcgccagcgcGCGGTTTCTGAATTTCAGCGACTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATcg                                                                                                                                                                                                                                    <  2:2728919/202‑1 (MQ=255)
                                                                                                                       cgccagcgcGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCAcgcccgc                                                                                                                                                                                                                                                     >  1:411279/1‑183 (MQ=255)
                                                                                                                       cgccagcgcGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCAcgcccgc                                                                                                                                                                                                                                                     <  2:411279/183‑1 (MQ=255)
                                                                                                                               cgcgGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCCGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAg                                                                                                                                   <  1:808599/289‑1 (MQ=255)
                                                                                                                                              tCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGa                                                                                                                                                                                                                                                 >  1:2045089/1‑164 (MQ=255)
                                                                                                                                              tCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGACCa                                                                                                                     >  1:915405/1‑288 (MQ=255)
                                                                                                                                                     cTGTTACAGCCAAATCATCAGTACCAGGCCGACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATGTATGCATTGAGGGAGTAGTTGATCGCCCCGTAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             <  1:2212206/289‑1 (MQ=255)
                                                                                                                                                     cTGATACAGCCAAATTATGAGTACCAGGCCTACACACGCCAGTGCGCCCCAGGTAATTTGAGCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGc                                                                                                              <  2:2258852/288‑1 (MQ=255)
                                                                                                                                                            aGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCTCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTgcgacat                                                                                                                                                        <  2:1973024/239‑7 (MQ=255)
                                                                                                                                                                  atcatcAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAg                                                                                                           <  1:955610/278‑1 (MQ=255)
                                                                                                                                                                        aGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCggg                                                                                                                                              >  2:2504795/1‑237 (MQ=255)
                                                                                                                                                                        aGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCACATCACCGCCAGGCCTAATACCATCAGTg                                                                                          >  1:2060905/1‑289 (MQ=255)
                                                                                                                                                                         gTACCAGTCGTACACACGCCAGTGGGCCCATGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGAACGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTg                                                                                          <  2:1154232/288‑1 (MQ=255)
                                                                                                                                                                                tCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGagaa                                                                                  >  1:1085193/1‑289 (MQ=255)
                                                                                                                                                                                 ccTACACGCGCCAGTGCTCCCCAGGTAATGTGATCAAATACTTCAATAGATGCATTGAGGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGagaag                                                                                 <  2:2060905/289‑1 (MQ=255)
                                                                                                                                                                                 ccTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGagaag                                                                                 <  1:766854/289‑1 (MQ=255)
                                                                                                                                                                                   tACCCACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAagag                                                                               <  1:1296918/289‑1 (MQ=255)
                                                                                                                                                                                   tACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATAGATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAagag                                                                               <  1:1602443/289‑1 (MQ=255)
                                                                                                                                                                                    acacacTCCAGTGCTCCGCAGGTAATTTAATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCCACCCGGAAGCATCAAACGAAG‑ACTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAAGTCGCGATCGCGCAAGAAAGCAGCAGGGAGATGCCGGTTAATACGCCGGTCACACCGGGGAGTTCAATGCCCGTAACTCTCTACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGACAGTACCCGCCACGCACAACACCACATGTGGCGGCGAagaga                                                                              >  2:2172741/1‑288 (MQ=255)
                                                                                                                                                                                    acacacGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGagaaga                                                                                >  1:1154232/1‑287 (MQ=255)
                                                                                                                                                                                     cacacGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTcaca                                                                                                                                                                                        >  2:2041631/1‑182 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGaaa                                                                                                                                                                                                                           <  1:855603/142‑1 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATAc                                                                                                                                                                                                  <  1:1489296/167‑1 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATAc                                                                                                                                                                                                  >  2:1489296/1‑167 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCg                                                                                                                                           >  2:2551918/1‑222 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCCGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCAt                                                                        >  1:117910/1‑289 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGc                                                                                                         >  1:2288771/1‑256 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAg                                                                                            <  2:1420841/269‑1 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCAt                                                                        >  1:903039/1‑289 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCAt                                                                        >  1:1026419/1‑289 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCAt                                                                        >  2:1350590/1‑289 (MQ=255)
                                                                                                                                                                                          gCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTAGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTAAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAACACCAACAGTGGCAGAGAAGAGGGAACAt                                                                        >  1:2023605/1‑289 (MQ=255)
                                                                                                                                                                                               tGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAagc                                                                                                                                                                                                                         <  1:2689497/139‑1 (MQ=255)
                                                                                                                                                                                               tGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACAtt                                                                   >  2:527750/1‑289 (MQ=255)
                                                                                                                                                                                                    cccAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTa                                                                                                                                                                                                      <  2:1439535/153‑1 (MQ=255)
                                                                                                                                                                                                              ttGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGAc                                                             >  1:678938/1‑280 (MQ=255)
                                                                                                                                                                                                              ttGATCAAATACTTAAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGgcg                                                    <  2:1797154/289‑1 (MQ=255)
                                                                                                                                                                                                                gATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCt                                                  >  1:2539071/1‑289 (MQ=255)
                                                                                                                                                                                                                 ttCAAATACTTAAATATATGGATTGAGGGAGTAGTTGAGCGCCCCGGAAGCATCAACCGGAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCtt                                                 <  2:2346952/288‑1 (MQ=255)
                                                                                                                                                                                                                  tCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAg                                                                                                                                   <  2:1629092/206‑1 (MQ=255)
                                                                                                                                                                                                                  tCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTg                                                                                          >  2:1518573/1‑247 (MQ=255)
                                                                                                                                                                                                                  tCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTg                                                                                          <  1:1518573/247‑1 (MQ=255)
                                                                                                                                                                                                                  tCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTg                                                                             >  1:1633412/1‑260 (MQ=255)
                                                                                                                                                                                                                  tCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCG‑CCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAAAGGGACCATACATTGCGGACCAGCGGGCCCTCaa                                               >  2:2306753/1‑289 (MQ=255)
                                                                                                                                                                                                                   cAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCgg                                                                                                                                                                                    >  1:1869069/1‑156 (MQ=255)
                                                                                                                                                                                                                      aTACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAgg                                             >  1:2633093/1‑288 (MQ=255)
                                                                                                                                                                                                                        aCTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATa                                                                       >  1:2487753/1‑260 (MQ=255)
                                                                                                                                                                                                                        aCTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCa                                          <  1:2548217/289‑1 (MQ=255)
                                                                                                                                                                                                                             aaTATATGGATTGATGGAGTAGTTGTTCGCACCGGAAGCATCAAACGGAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATg                                     <  2:2539071/289‑1 (MQ=255)
                                                                                                                                                                                                                                    gcttttcttgggtagtTGATCGCCCTGGATCCATCAAA‑CGAGAACTGCGATGTCGGTTCGGAAATCACGTCCGCGAAATAGTTCGAGTTCGAGCCAGAAAGCAGCATGTAGATTCCGGTTAAAACGCCGGTCACGCCGGGGATTTCATTGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCCCCGCCAGGCCTAATACCATCAGTGTCAGAGAAGAGTGAACATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATc                              <  2:369396/278‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACAcc                                                                                                                                                                                      >  2:1907646/1‑137 (MQ=255)
                                                                                                                                                                                                                                    gCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGcgcg                                                                                                                                                                     <  1:698483/154‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             >  1:2228384/1‑210 (MQ=255)
                                                                                                                                                                                                                                    gCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             <  2:2228384/210‑1 (MQ=255)
                                                                                                                                                                                                                                    gCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGTCCTAATACCACCATTGGCACATAAGAGTGAACCAACAGTGCGGATCACCGGGACCTGAAGGTCAGAATGGAggcac                              >  2:1260533/1‑285 (MQ=255)
                                                                                                                                                                                                                                      aTTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTgcgacat                                                                                                                                                        <  2:2226015/165‑7 (MQ=255)
                                                                                                                                                                                                                                       ttGATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCg                            >  2:844117/1‑288 (MQ=255)
                                                                                                                                                                                                                                         gATGGAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGGAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCGGAATGCAGAATCCGgcg                         <  1:1450499/289‑1 (MQ=255)
                                                                                                                                                                                                                                          gtGGGGTAGGTGATCGCCCCGGAAGCATCACACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGgcg                         <  2:739383/287‑1 (MQ=255)
                                                                                                                                                                                                                                             gAGTAGTTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGCTAAACAGTTCCGCAAAGCCCCTCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCGTACATTGCGGACCAGCGGGGGCGACAGGACAGAATGCAGAATGCgaagccaa                     >  2:1172744/1‑282 (MQ=255)
                                                                                                                                                                                                                                               gtagtTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTTAGAATGCAGAATCCGGCGCtcat                    <  1:1430857/288‑1 (MQ=255)
                                                                                                                                                                                                                                               gtagtTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGAGCGTAAGGTCAGAATGCAGAATCCGGCCCtcata                   >  2:450727/1‑288 (MQ=255)
                                                                                                                                                                                                                                                tagtTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCtcatca                  >  2:1319365/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  gtTGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGgcg                         <  2:1937473/280‑1 (MQ=255)
                                                                                                                                                                                                                                                    tGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             <  2:288918/194‑1 (MQ=255)
                                                                                                                                                                                                                                                    tGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             >  1:288918/1‑194 (MQ=255)
                                                                                                                                                                                                                                                    tGATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCaggcc              <  1:450727/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     gATCGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCaggcca             >  1:196555/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGa                                                                                                                                                                                                                             >  2:1864960/1‑78 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             <  1:1954518/190‑1 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             >  1:1374739/1‑190 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATa                                                                                                   >  2:2415589/1‑200 (MQ=255)
                                                                                                                                                                                                                                                        cGCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTCCTGACCAGAGGGCCCTGAAGGTCAGCATGCAGAATCCGGCGATGATCaggccaag           >  2:1696342/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         gCCCCGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCaggccaaggc         <  1:2349223/289‑1 (MQ=255)
                                                                                                                                                                                                                                                          ccccGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             >  2:2462870/1‑188 (MQ=255)
                                                                                                                                                                                                                                                          ccccGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGcc                                                                                                             <  1:2462870/188‑1 (MQ=255)
                                                                                                                                                                                                                                                             cGGAAGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGgccaaggccaag     <  1:552605/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                aaGCATCAAACGAAG‑CCTGCGATGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGGGGCAGCGGAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGGCAGATTGCAGGCTCCGGCGCTCAGAGTGCCAAGGCCGAGAGc  >  2:57156/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                           
GAACGCCTTATCCAGCCTACAAATTTGTGCAAATTCAATAAATTGCAGGAAATACGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATCGGTGCTGGCCTATTAAGACTCCAGCGCCAGCGCGCGGTTTCTGAATTTCAGCGCCTGATACAGCCAAATCATCAGTACCAGTCCTACACACGCCAGTGCGCCCCAGGTAATTTGATCAAATACTTCAATATATGCATTGATGGAGTAGTTGATCGCCCCGGAAGCATCAAAGCTAG‑CCTGGCTTGTCTGATCGGCAATCACGCCCGCCAGATAGTTCGCGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGGCTCATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGC  >  CP042583/603802‑604346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A