Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F210 I1 R1	4928	340.1	5480506	96.9%	5310610	252.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	760,482	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	760,482	0	A	T	98.5%	614.2 / ‑3.1	265	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (132/127); minor base C (3/1); total (136/129)
Fisher's exact test for biased strand distribution p-value = 6.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	760,483	0	G	C	99.6%	618.7 / NA	265	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (136/128); minor base T (0/1); total (136/129)
Fisher's exact test for biased strand distribution p-value = 4.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	760,484	0	C	G	100.0%	628.9 / NA	265	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (136/129); total (136/129)

Only 100 of 265 total aligned reads displayed.

GACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGAAGTAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGAGCCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTAGTAGATTGCGGGAACTGGATCGCAGCATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGAGCCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGCCTGGT  >  CP042583/760205‑760761

|||

    gcggcggcgATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCT‑GCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAagcagc                                                                                                                                                                                                                                                                          >  1:953680/1‑289 (MQ=255)

                          ttGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCCCTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGGTAGAAGAAGCAGGGATGGAGCTCGGTGCgcagcc                                                                                                                                                                                                                                                     >  2:513286/1‑284 (MQ=255)

                          ttGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGAcgcc                                                                                                                                                                                                                                                     >  1:2604929/1‑289 (MQ=255)

                                        ctggtgcGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATAGCTCGATAGAAGAAGCAGCGATGGATATCGGGTCGACGCCGCTGAAAGTGtttt                                                                                                                                                                                                                                       >  1:1885427/1‑289 (MQ=255)

                                         tggtgcGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGttttt                                                                                                                                                                                                                                      <  1:476842/289‑1 (MQ=255)

                                            tgcGCTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCg                                                                                                                                                                                                                                    >  1:22545/1‑288 (MQ=255)

                                               gcTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTTGGACGCCGCTGAAAGTGTTTTTCgcaat                                                                                                                                                                                                                                >  2:1797106/1‑285 (MQ=255)

                                               gcTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCAt                                                                                                                                                                                                                                <  1:1204590/289‑1 (MQ=255)

                                                ctctGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCCCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTTCGGGAACTGGATGGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCAtt                                                                                                                                                                                                                               >  1:155126/4‑289 (MQ=255)

                                                cTTTGGCAGGTTTCGCGGATCAAGTGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCAtt                                                                                                                                                                                                                               >  1:1009531/1‑289 (MQ=255)

                                                cTTTGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCAtt                                                                                                                                                                                                                               >  1:2279507/1‑289 (MQ=255)

                                                   tGGGAGGGTTCGCGGGTCGAATGGCTTGGCCTTTATGCTCACCGCGCCGATGGTGAGGCCAGATGTCATCACGCGCTTGTCGCTGTTGTTATTAGTCGTCGCGCTTGCTCATGCCATTGTGT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGGCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  2:2136653/289‑1 (MQ=255)

                                                   tGGCAGGTTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  1:1643229/289‑1 (MQ=255)

                                                   tGGCAGGGTTCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  1:139769/289‑1 (MQ=255)

                                                           ttCGCGGATCAAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGCCGCCGCGGAAAGTGTTTTTCGTCCTTACGCTACCgat                                                                                                                                                                                                                    >  2:402828/1‑289 (MQ=255)

                                                                              tGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTAAGCTACCGATGGACATGccacggataatt                                                                                                                                                                                                 >  1:135130/1‑279 (MQ=255)

                                                                                ccTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  1:2093897/260‑1 (MQ=255)

                                                                                          cACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGTCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTa                                                                                                                                                                                     <  1:2669934/289‑1 (MQ=255)

                                                                                          cACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTCCGCCGCCGCTGAAAGTGTTTATTGTCAGTACGCTACCGATTATCACTCCCGGGAGCATTTCTTGCTGGTTa                                                                                                                                                                                     >  2:1830209/1‑289 (MQ=255)

                                                                                           aCCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGtt                                                                                                                                                                                      >  1:102718/1‑287 (MQ=255)

                                                                                            ccGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGAGTTTTTCGTCATTACGCTACCgatgaa                                                                                                                                                                                                                 >  1:1169255/1‑258 (MQ=255)

                                                                                               cgccgcTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCACGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCTCTGAATGAGTTATTCGTCATTACGCTACCGATGATCATGCCCGCGATCACGCCCGGCTGGttccgt                                                                                                                                                                                  >  2:1850783/1‑283 (MQ=255)

                                                                                                gccgcTGGTAATGCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCTGGGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGAGGGATCTCGGTGCGACGCAGCTGAAAGTGTATTTCGTCAATACGCTACCGATGATCATGACCGCGCTCCCTTCAGGCTGGTTACTg                                                                                                                                                                                  >  2:1770706/1‑287 (MQ=255)

                                                                                                            gCCAGATGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGAt                                                                                                                                                                                                     <  1:43867/255‑1 (MQ=255)

                                                                                                                 aTGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGGGGTTTTCGTCATTACGCTACCGATGATCATGCCCGCGAGTATTTCTGGCTTGTTACTGGCTTTGAcatgtctcttata                                                                                                                                                              >  2:441400/1‑277 (MQ=255)

                                                                                                                 aTGTCATCACGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCCTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTTAAAGTGTTTTTCGTCATTACGCTAACGATGATCATGCCCGCGa                                                                                                                                                                                                      >  2:1663192/1‑249 (MQ=255)

                                                                                                                  tGTCATCACGGGCTTGTCGCTGTTGTTATGATTCGTCGCGCTTGCTCATGCCATTGGCT‑GTACTGCGGACCGCCGTATGCTCACCATCGGGCTGGCGAATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGAGGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTGACTGGCTTTTACTT‑Tgtcgcttg                                                                                                                                                              <  1:81232/287‑8 (MQ=255)

                                                                                                                      atcaCGGGCTTGTCGCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  2:795434/222‑1 (MQ=255)

                                                                                                                             gcttgtcgcTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGa                                                                                                                                                  >  2:2471599/9‑288 (MQ=255)

                                                                                                                              cttgtcgcTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGACAGTGTGTTTCTTCATTACGATACCGGTGATCATGCCCGCGATCAGTTCTGCCTGGTTACCGGCTTTTTCTT‑TGTGGCTTTATGCTCTGGTGATc                                                                                                                                                >  2:2235177/8‑289 (MQ=255)

                                                                                                                                tgtcgcTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTAGTGGCTTTACCTT‑TGTCGCCTGATGATCTtgtgctat                                                                                                                                               >  2:485557/6‑284 (MQ=255)

                                                                                                                                            tattatTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTc                                                                                                                                  <  2:198823/289‑1 (MQ=255)

                                                                                                                                                attCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCCTCCGATGCTCATGCCCGCGGTCATTCTTGGCTGGGTACCGGCCTTTACTTATTCTTCTTG‑TGATCTGGTGATCGCCAGCTTTTGTTcccg                                                                                                                               >  2:214201/1‑286 (MQ=255)

                                                                                                                                                      cgcgCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGAc                                                                                                                                                                                                                                                        <  1:839726/162‑1 (MQ=255)

                                                                                                                                                      cgcgCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGAc                                                                                                                                                                                                                                                        >  2:839726/1‑162 (MQ=255)

                                                                                                                                                      cgcgCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTccgggccggg                                                                                                                         <  1:513286/288‑1 (MQ=255)

                                                                                                                                                        cgcTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAg                                                                                                                       >  1:1426551/1‑288 (MQ=255)

                                                                                                                                                           ttGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGcca                                                                                                                    <  1:2240509/288‑1 (MQ=255)

                                                                                                                                                             gCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGccacc                                                                                                                  >  1:1993322/1‑288 (MQ=255)

                                                                                                                                                              cTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTATTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCcaccac                                                                                                                >  1:61697/1‑289 (MQ=255)

                                                                                                                                                                   gCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑Tgt                                                                                                                                                                    >  2:2309386/1‑231 (MQ=255)

                                                                                                                                                                     cATTGGGT‑GGCCTGCGGACCGCGGTATGGTTCCCATCTGGCTGGCGCATGTCACGATTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTAcc                                                                                                          <  2:1566564/288‑1 (MQ=255)

                                                                                                                                                                       ttGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATAATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGTGCTACCACGTTACCGAt                                                                                                       >  1:657856/1‑289 (MQ=255)

                                                                                                                                                                        tggct‑ggcCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATTATTTGTGTCTCGCCAGCTTTGTTTCCGGGCCGGGAGCCCCCACGtgtccaat                                                                                                       >  2:2195042/1‑281 (MQ=255)

                                                                                                                                                                        tggct‑ggcCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGAt                                                                                                       >  1:2045995/1‑288 (MQ=255)

                                                                                                                                                                         ggct‑ggcCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCg                                                                                                                                                                                                                      >  1:776953/1‑177 (MQ=255)

                                                                                                                                                                              ggcCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGt                                                                                                 >  1:1283585/1‑289 (MQ=255)

                                                                                                                                                                              ggcCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGt                                                                                                 <  2:1339963/289‑1 (MQ=255)

                                                                                                                                                                                ccTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACg                                                                                                                                                                                                                            <  1:1782664/165‑1 (MQ=255)

                                                                                                                                                                                ccTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCTCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑Tgt                                                                                                                                                                    >  2:887390/1‑219 (MQ=255)

                                                                                                                                                                                    cGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCAt                                                                                                                                                                                                                                <  1:2499073/157‑1 (MQ=255)

                                                                                                                                                                                    cGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTCACCGATGCTGGTCtttt                                                                                            >  1:367994/1‑288 (MQ=255)

                                                                                                                                                                                       ccggcgGTTTGCTTCCCATCTGGCTTGGGGATGTTACTTTTTGTACGGGTTTTGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAg                                                                                        <  2:934854/286‑1 (MQ=255)

                                                                                                                                                                                        ccGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGc                                                                                       <  1:894022/289‑1 (MQ=255)

                                                                                                                                                                                         cgcgGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTtgatg                                                                                                                                                           >  2:599866/1‑220 (MQ=255)

                                                                                                                                                                                         cgcgGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCTGCTTTGTTTCAGGGCCGGGAGCCACCACGTTa                                                                                                            >  1:2299798/1‑267 (MQ=255)

                                                                                                                                                                                           cgGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTg                                                                                    >  1:650646/1‑289 (MQ=255)

                                                                                                                                                                                                     aCCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTc                                                                                                                                  <  2:1407304/233‑1 (MQ=255)

                                                                                                                                                                                                     aCCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATggctg                                                                          >  1:934854/1‑286 (MQ=255)

                                                                                                                                                                                                      ccATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATGATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGTGGATCGCCATCTTTGTTTCCGGGCCGGGAGCCAACACGTATCCGATTCTGGTCTTTTCCAGCGTTCGGAGGGGGGt                                                                         >  2:2590625/1‑289 (MQ=255)

                                                                                                                                                                                                        aTCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGc                                                                                   >  1:740083/1‑277 (MQ=255)

                                                                                                                                                                                                           tggctggcGAATGTAACTTTTGTTAGGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATc                                                                    <  2:1009531/289‑1 (MQ=255)

                                                                                                                                                                                                            ggctggcGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATc                                                                                                                                                        >  1:759052/1‑204 (MQ=255)

                                                                                                                                                                                                            ggctggcGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATc                                                                                                                                                        <  2:759052/204‑1 (MQ=255)

                                                                                                                                                                                                             gctggcGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGttttt                                                                                                                                                                                                                                      <  1:1657486/126‑1 (MQ=255)

                                                                                                                                                                                                                 gcgcATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGttttt                                                                                                                                                                                                                                      >  1:2639841/1‑122 (MQ=255)

                                                                                                                                                                                                                 gcgcATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCGGGGCTTTTCCAGCGTTAGGATGGGGGTGAACTCGGaaa                                                              >  2:1896225/1‑289 (MQ=255)

                                                                                                                                                                                                                     aggTCACTTTGTGTACGTGTTATGTGGC‑GGTCTTTTTTGCTTCAAGATTGCGGGAGCTGGATCTCGCGATAGAAGAAGCAGCGATGGTTCTCGGTGCGACTCCGCTGAAAGTGTTTTGCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCa                                                           <  2:2524995/286‑1 (MQ=255)

                                                                                                                                                                                                                          aCTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGccc                                                     <  2:1691165/289‑1 (MQ=255)

                                                                                                                                                                                                                           cTTTTTGTGCGGGTGATTTGGA‑GGTCGGTATTGCTTCAAGGTTGCGGGGACTGGATCGCTCGAGAGAAGGAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGTTCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCt                                                    <  2:148750/289‑1 (MQ=255)

                                                                                                                                                                                                                              tttGTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGc                                                 <  1:485557/289‑1 (MQ=255)

                                                                                                                                                                                                                              tttGGACGGCTCA‑GTGGCGGGTCGTTGTTTCTTTCGGATTGCGGGAACGGGTTGGATTGGTGGAAGAAGAAGCGCTGGGTGTCGGTGAGTCGCCGCTGAAAGTGTTTTTCGTCATGACGCTGCCGATGATCATGCCTGCGATCATTTCTGGCTGGTTACTGGCTTTTAGTT‑GGGCGCTTGATGATCTGGTGATCGCCAGATTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGc                                                 <  2:2654583/289‑1 (MQ=255)

                                                                                                                                                                                                                                 gTACGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAAc                                              >  2:225968/1‑289 (MQ=255)

                                                                                                                                                                                                                                    cGGCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGc                                                                                                                                                                                <  2:649202/157‑1 (MQ=255)

                                                                                                                                                                                                                                      gCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGttttt                                                                                                                                                                                                                                      <  2:2611764/101‑1 (MQ=255)

                                                                                                                                                                                                                                      gCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑Tgtcgct                                                                                                                                                                >  1:1760355/1‑165 (MQ=255)

                                                                                                                                                                                                                                      gCTTATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACAGATGCGGGTCTTTTCAGCCGTGCGGGTGGGGTTGAACCGGGAAATCAACCCCCTGGCAACCTTg                                          >  2:1202050/1‑288 (MQ=255)

                                                                                                                                                                                                                                         tATGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTAc                                                                                                                                                                                                                        >  2:2085587/1‑112 (MQ=255)

                                                                                                                                                                                                                                          aTGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGa                                                                                                                                                                                                      >  2:1440926/1‑129 (MQ=255)

                                                                                                                                                                                                                                          aTGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGa                                                                                                                                                                                                      <  1:1440926/129‑1 (MQ=255)

                                                                                                                                                                                                                                          aTGTGGC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGt                                                                                                 >  2:435724/1‑229 (MQ=255)

                                                                                                                                                                                                                                               gC‑GGTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGgc                                 >  1:2072665/1‑288 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATTATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TTTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGTGCGTGGAGCAACCCCGTTACCGATGCTGGTCTTTTCGAGCGTGTGGATGGGGGGGTCTCCGGGCTTGAATGTGCTTGCAACATTGATCCCCGgc                                 >  2:2385671/1‑286 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTg                                                                                                   >  2:1078721/1‑220 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTg                                                                                                   <  1:1078721/220‑1 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGc                                                       >  1:2220192/1‑264 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGcgcg                              >  1:2372524/1‑289 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGcgcg                              >  1:2315984/1‑289 (MQ=255)

                                                                                                                                                                                                                                                  ggTCGTTATTTCTTCAAGATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGcgcg                              >  1:2139903/1‑289 (MQ=255)

                                                                                                                                                                                                                                                              ttcaagATTGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTc                                                                                                                                  >  2:1069750/5‑177 (MQ=255)

                                                                                                                                                                                                                                                                     ttGCGGGATCTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTa           <  1:1744862/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                      tGCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTAt          <  1:2590625/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                      tGCGGGAACTGGATCGCCCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTc                                                                                                                                  <  2:728034/169‑1 (MQ=255)

                                                                                                                                                                                                                                                                      ggCGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGTAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGCCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTAt          <  1:855286/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                        cGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATc         >  1:409349/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                        cGGGAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGCTCGGAATTGTCGGATTTATc         >  1:592390/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                           gatcTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGTCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGcc      <  1:280978/285‑1 (MQ=255)

                                                                                                                                                                                                                                                                           gAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGcc      <  1:1667947/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                           gAACTGGATCGCTCGATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGcc      <  1:1830209/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                              cgggATCGCTCGATAGAAGCAGCCGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGTCGCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGCCTGGt  <  2:2728707/287‑1 (MQ=255)

|||

GACGGCGGCGGCGATCCTCGGAACTATTGCGGCGGTGGTGCTGGTGCGCTTTGGCAGGTTTCGCGGAAGTAATGGCTTTGCCTTTATGATCACCGCGCCGCTGGTAATGCCAGATGTCATCACGGGCTTGAGCCTGTTGTTATTATTCGTCGCGCTTGCTCATGCCATTGGCT‑GGCCTGCGGACCGCGGTATGCTCACCATCTGGCTGGCGCATGTCACTTTTTGTACGGCTTATGTGGC‑GGTCGTTATTTCTAGTAGATTGCGGGAACTGGATCGCAGCATAGAAGAAGCAGCGATGGATCTCGGTGCGACGCCGCTGAAAGTGTTTTTCGTCATTACGCTACCGATGATCATGCCCGCGATCATTTCTGGCTGGTTACTGGCTTTTACTT‑TGAGCCTTGATGATCTGGTGATCGCCAGCTTTGTTTCCGGGCCGGGAGCCACCACGTTACCGATGCTGGTCTTTTCCAGCGTGCGGATGGGGGTGAATCCGGAAATCAACGCCCTGGCAACATTGATCCTCGGCGCGGTCGGAATTGTCGGATTTATCGCCTGGT  >  CP042583/760205‑760761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A