Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 771,241 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583771,2410GC99.6% 584.8 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (140/107);  total (140/108)
Fisher's exact test for biased strand distribution p-value = 4.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
*CP042583771,2420CG98.8% 566.8 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base G (138/106);  total (140/108)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583771,2430TA98.4% 573.7 / NA 248intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (137/107);  minor base G (3/1);  total (140/108)
Fisher's exact test for biased strand distribution p-value = 6.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 248 total aligned reads displayed.

AGACCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGGCTGACGTCAAGATGCGTCACCAGGCGGACAATCGGGCTGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCATCCCGCCAC  >  CP042583/770966‑771515
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                
aGACCGGAACGATCTGCTGCCACCGTGCGGGTAGGTTATACGGCCAGCTGAGATCGACTTTATGGCAACGCACGGTTGCCAGTTGCAGCTTTGCAAGCCTGTCGCCAGGCGGTGCCGCCGGCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGGTGCTGACT‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGAt                                                                                                                                                                                                                                                                       <  2:947452/289‑1 (MQ=255)
  aCCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATg                                                                                                                                                                                                                                                                      >  1:2554646/1‑288 (MQ=255)
           atatCCTGCGACAGGGCGGGTAGGTTATCCGGCCAGTTGGGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAgg                                                                                                                                                                                                                                                            <  2:1095798/289‑1 (MQ=255)
                   cAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCCGGAATGCACGCCAGGGGGCGGCGACTTCCCGCAGTTGCTCGCGCGAGCCCTCAAAAGTCGCCACCAGGCGGaaaa                                                                                                                                                                                                                                                     >  2:446313/1‑288 (MQ=255)
                   cAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGGATGCACGCCAGGGGGCGGCGACTTCCGCCAGTTGTTTGCGCGGGACGTCAAGACGCGTTACCAGGCGGACaa                                                                                                                                                                                                                                                     >  2:2140358/1‑288 (MQ=255)
                         ggCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATg                                                                                                                                                                                                                                                                      >  2:485791/1‑265 (MQ=255)
                         ggCCGGTAGGTAATCGGGCCAGCTGAGCTCGACTTTATGGCACCTGACGTTTGCCGGTTGCAGCTTTGCAAGCCTGTCGACATGAGGTGCCGCCGCCAGGATCTGATGCCGTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCggcg                                                                                                                                                                                                                                               <  2:2690721/288‑3 (MQ=255)
                           ccGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCggcgagg                                                                                                                                                                                                                                            >  1:913975/1‑284 (MQ=255)
                           ccGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCggcgag                                                                                                                                                                                                                                             >  1:1878772/1‑284 (MQ=255)
                           ccGGGAGGTGAGCCGGCCAGCTGGGTGTGTCTGTGTGGCAACTGCCTGTGGCCAGTTGGAGCTTTGCAGGCCTGTCGGCAGGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGGGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCggcgag                                                                                                                                                                                                                                             <  2:1582545/288‑5 (MQ=255)
                                   ttATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATc                                                                                                                                                                                                                                    >  1:2041682/1‑289 (MQ=255)
                                                                   aCTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTa                                                                                                                                                                                                     >  2:2578366/1‑288 (MQ=255)
                                                                   aCTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTGTCAGGTATTCGCCTa                                                                                                                                                                                                     >  1:2279214/1‑288 (MQ=255)
                                                                        cGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCgg                                                                                                                                                                                               <  1:319753/289‑1 (MQ=255)
                                                                           ttGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGgca                                                                                                                                                                                             <  1:1146510/288‑1 (MQ=255)
                                                                                          ttGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACACGGCAGCATTTTCTTCCCCGa                                                                                                                                                                             <  1:935689/289‑1 (MQ=255)
                                                                                          ttGCAAGCCGGTCGACATGACAGGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGa                                                                                                                                                                             <  2:2702903/289‑1 (MQ=255)
                                                                                                    gTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGaacaaa                                                                                                                                                                   <  1:256737/289‑1 (MQ=255)
                                                                                                     tCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAgg                                                                                                                                                                                                                                                            >  1:1861376/1‑199 (MQ=255)
                                                                                                     tCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAgg                                                                                                                                                                                                                                                            <  2:1861376/199‑1 (MQ=255)
                                                                                                     tCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGaacaaac                                                                                                                                                                  >  1:2077005/1‑289 (MQ=255)
                                                                                                         caggACGGGCCGCCGCCAGGATCTGATGCCCTGGCTGGCTGAGTGTGCGAACAGAATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGaacaaaca                                                                                                                                                                 <  2:1115085/283‑1 (MQ=255)
                                                                                                         cATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCa                                                                                                                                                              <  1:1278757/289‑1 (MQ=255)
                                                                                                          aTGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCat                                                                                                                                                             >  1:1022716/1‑289 (MQ=255)
                                                                                                            gACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCg                                                                                                                                                                                                                       >  1:2072405/1‑229 (MQ=255)
                                                                                                            gACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCatat                                                                                                                                                           <  1:105978/289‑1 (MQ=255)
                                                                                                            gACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCatat                                                                                                                                                           >  1:436300/1‑289 (MQ=255)
                                                                                                              cGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTg                                                                                                                                                         <  1:1750427/289‑1 (MQ=255)
                                                                                                                   cgccgccAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGgt                                                                                                                                                       >  1:1115085/1‑286 (MQ=255)
                                                                                                                       gccAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTa                                                                                                                                                                                                             >  2:2264255/1‑228 (MQ=255)
                                                                                                                       cccAGGATCTGGTCCCCTTGCTGGGTGAGTGGGCGAACCAGATCCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGa                                                                                                                                                <  2:2041682/288‑1 (MQ=255)
                                                                                                                        ccaggttcgggggCCCTTGGTGGCTGGGTGTGCGCACCAGTTGC‑GACCAAATTGACCCCCTGGCACCGAGAAGTAAAATGCGTGGGGGCCGGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGa                                                                                                                                                <  2:551475/276‑1 (MQ=255)
                                                                                                                             aTCTGCGGCCCTTGCTGGCGGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTACCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCAt                                                                                                                                           <  2:913975/288‑1 (MQ=255)
                                                                                                                                          gctggctgAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTtc                                                                                                                                                                                                                          >  2:727496/1‑196 (MQ=255)
                                                                                                                                          gctggctgAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTg                                                                                                                             <  1:1802787/289‑1 (MQ=255)
                                                                                                                                          gcggtcggggtggtcgcACTAGATGCTGACC‑AATGTGGCGACTGGCACCGAGAACGAAAATGCGTTGCGGAACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTg                                                                                                                             <  2:1365354/275‑1 (MQ=255)
                                                                                                                                                tgAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCa                                                                                                                        >  1:1478191/1‑288 (MQ=255)
                                                                                                                                                  aGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGc                                                                                                                     >  1:2669992/1‑289 (MQ=255)
                                                                                                                                                   gtgtGCGCGCCAGATCCTGACC‑ACTGTGGCCAGTGCAACCGAGAGCGAAAATGCGTGGCGGCACGTCCCTCTCGTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCTGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGc                                                                                                                     <  2:677755/288‑1 (MQ=255)
                                                                                                                                                    tgtgCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCg                                                                                                                                                                                                                       <  1:871748/189‑1 (MQ=255)
                                                                                                                                                    tgtgCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCa                                                                                                                    >  1:2321484/1‑288 (MQ=255)
                                                                                                                                                        cgcACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTg                                                                                                                             >  1:545858/1‑275 (MQ=255)
                                                                                                                                                        cgcACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAgctg                                                                                                                >  1:34847/1‑288 (MQ=255)
                                                                                                                                                             ctgctGCTGACA‑AAGGTAGCCCCGGGCGCCGGGACATAAAATGCGGTGCGGCACGTCTCTCTCCTTAACGCGCAAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGGCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGc                                                                                                          <  2:2474282/285‑1 (MQ=255)
                                                                                                                                                             cgtgtgctgcCC‑AATGGACCCAAGGACACCGAGAACTAAAATGCGGTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTcc                                                                                                            <  2:974623/283‑1 (MQ=255)
                                                                                                                                                              aGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGc                                                                                                          >  2:162218/1‑288 (MQ=255)
                                                                                                                                                              aGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTAGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGc                                                                                                          >  1:1373265/1‑288 (MQ=255)
                                                                                                                                                                      gacgactgtgcccACGGGCCCGGGGAACCAAAACGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAgg                                                                                                  <  2:1022716/278‑1 (MQ=255)
                                                                                                                                                                           aTGTATCCACTGGAGCGGTGAGCAAAAAGGCGTGGCGGGACGACTCTCTCCTTACCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCg                                                                                             <  2:1878772/289‑1 (MQ=255)
                                                                                                                                                                           aTGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTtct                                                                                                                                                                                                                         >  2:780808/1‑165 (MQ=255)
                                                                                                                                                                           aTGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTtct                                                                                                                                                                                                                         <  1:780808/165‑1 (MQ=255)
                                                                                                                                                                           aTGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTATTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCCCGCCGCCGCCTCGTCCTCCAGGCcgcg                                                                                             >  2:1304602/1‑289 (MQ=255)
                                                                                                                                                                            tGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGa                                                                                                                                                >  1:1450787/1‑237 (MQ=255)
                                                                                                                                                                            tGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAgctgct                                                                                                              >  1:679968/1‑271 (MQ=255)
                                                                                                                                                                            tGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGt                                                                                            >  1:213222/1‑289 (MQ=255)
                                                                                                                                                                                   aCTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTg                                                                                                                                                         >  1:658084/1‑221 (MQ=255)
                                                                                                                                                                                     tGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGaacaaa                                                                                                                                                                   >  1:1925254/1‑209 (MQ=255)
                                                                                                                                                                                     tGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTTCTCCGCCATCCTGGCAGCCTTGTCGTgg                                                                                    >  2:1153964/1‑288 (MQ=255)
                                                                                                                                                                                     tGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTgg                                                                                    >  1:1341916/1‑288 (MQ=255)
                                                                                                                                                                                     aaacgacaggacatAAAATGCGTGGCGGCACGTCTCTCGCCTAAGCGCGCCGGGAATGCACGCCAGTGGGCGACGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGt                                                                                   <  2:256158/276‑1 (MQ=255)
                                                                                                                                                                                      ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCTACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGTCGGACAATCGGCGACGCGTTAACCAGCGCGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCAGTTTCTTCCCCGACGCGGACAAACAGCATATTGGTGTCCTGACGCCTCACATCCGCTCCTGCGTCACGCCGCTGCCCCGCCCACCATACAGCGttcccgcgtt                                                                                   >  2:2181088/1‑280 (MQ=255)
                                                                                                                                                                                      ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACg                                                                                                                                              <  1:984167/229‑1 (MQ=255)
                                                                                                                                                                                      ggCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACAt                                                                                                                                      >  1:2334310/1‑237 (MQ=255)
                                                                                                                                                                                       gCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCt                                                                                 >  1:2148681/1‑289 (MQ=255)
                                                                                                                                                                                           cGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCtt                                                                                >  1:221226/1‑286 (MQ=255)
                                                                                                                                                                                               aaCTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGc                                                                                                                     >  1:1194881/1‑245 (MQ=255)
                                                                                                                                                                                                    aaaTGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAgcgcg                                                                    <  1:2162230/289‑1 (MQ=255)
                                                                                                                                                                                                    aaaTACGTGGCAGCACGTCTCTCTCCTTAACGCGACAGGAATGCACGCCAGTGGGCAGCGACTTCCGCCAGTTGTGCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTGAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAgcgcg                                                                    <  2:1805175/289‑1 (MQ=255)
                                                                                                                                                                                                        ggtgtggggCGCGTCTCTCGCCTGACCGGGCCAGGAAGCCACCCCGGTGGGCGGCGCCTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCaa                                                                 <  2:1405840/281‑1 (MQ=255)
                                                                                                                                                                                                         cGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTcc                                                                                                                                                   >  2:207636/1‑205 (MQ=255)
                                                                                                                                                                                                           ttGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTcc                                                                                                                                                   <  1:448740/203‑1 (MQ=255)
                                                                                                                                                                                                                 cACGTCTCCCGCCTTACCGCGCCAGGAATGCACGCCGGTGGGCGGCGACTTCCGCCAGTTGTTCGAGCGAGACGTCAAGATGCGTCACCAGGCGGACACTCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTAttttt                                                       <  2:2499041/289‑1 (MQ=255)
                                                                                                                                                                                                                    gTCGCTCCCCCTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCGGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAg                                                    <  1:1587798/289‑1 (MQ=255)
                                                                                                                                                                                                                       tctctcCTTAACGCGCCAGAAATGCACGCGAGTGGGCGGCGACTGCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTATCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGc                                                 <  2:304743/289‑1 (MQ=255)
                                                                                                                                                                                                                         tcccattACCGCGCCGGGGATGACCGCCGGCGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGGTGCGTCCCCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCat                                               <  2:1668928/284‑1 (MQ=255)
                                                                                                                                                                                                                                aaCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCTCGCGAGACGTCAATATGCGTCACCAGGCCGACACTCGCCTAGGCGTTAACCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCCCGCAGCTGCTCCGCAATCCAGGCAGCGTTGTCGTGGTCTTGCTGCAAGCGCGCAACGTTATTTTTCCGGGCattcttcc                                         >  2:871114/1‑282 (MQ=255)
                                                                                                                                                                                                                                aaCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCg                                                                                                                                                                                                                       >  2:457892/1‑114 (MQ=255)
                                                                                                                                                                                                                                aaCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCACCGTTATTTTTCAGGGCATATATccc                                        >  1:831373/1‑289 (MQ=255)
                                                                                                                                                                                                                                aaCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATccc                                        >  1:2370811/1‑289 (MQ=255)
                                                                                                                                                                                                                                aaCGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATcc                                         >  1:1785756/1‑288 (MQ=255)
                                                                                                                                                                                                                                     gcCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCTTCACCAGGCGGACAATCGGCTAGTCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCAGATTGGTGTCCTGACGCATCACATCCGCGCCTGCCTTACGCAGCTGCTCCGCCATCCAGGCACCGTTGGCTGCGTCTTACTGCAAGCGCGCAACGTTACTTCTTCGTGCTTATAACCcggac                                    >  2:2307302/1‑286 (MQ=255)
                                                                                                                                                                                                                                     gcCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCcggcg                                    >  1:2263967/1‑288 (MQ=255)
                                                                                                                                                                                                                                     gcCAGGAATGCACGCCAGTGGGCGGCGACTTCCACCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCgcgc                                                                                                                                >  1:1957812/1‑196 (MQ=255)
                                                                                                                                                                                                                                     gcCAGGAATGCACGCCAGTGGGCGGCGACTTCCACCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCgcgc                                                                                                                                <  2:1957812/196‑1 (MQ=255)
                                                                                                                                                                                                                                     gcCAGGAATCGACCGCTGTGGGGGGGGACTTCCGCAAGTTGGTGGCGGAGGACGTCAAGAGGCGTCGCCAGGCGGACAATCGGCGAGGCGTTAAGCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCcggcg                                    <  2:2060222/288‑1 (MQ=255)
                                                                                                                                                                                                                                       cAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCt                                                                                                                                                                                                                     <  2:2208375/109‑1 (MQ=255)
                                                                                                                                                                                                                                       cAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCCTCACGCAGCTGCTCCGCCACCCAGTCAGCGTTGTCGTGGTCTTCCTGCAAGCGAGCAACCTTATCTTTCCGGACATATATCACggcggcc                                 >  2:283185/1‑288 (MQ=255)
                                                                                                                                                                                                                                       cAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGGGTCCTGACGAATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTGGTCGTGGTCTTCCTGCAAGCGCGCAAAGTTATTTTTCAGGGCATATATCCCGGCGGCa                                 >  1:613453/1‑289 (MQ=255)
                                                                                                                                                                                                                                               cACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGc                                                                                                          <  1:1548428/208‑1 (MQ=255)
                                                                                                                                                                                                                                               cACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGc                                                                                                          >  2:1548428/1‑208 (MQ=255)
                                                                                                                                                                                                                                               cACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAgg                                                                                                  <  2:1141369/216‑1 (MQ=255)
                                                                                                                                                                                                                                               cACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAAt                         >  1:155980/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   cgaGTGGGCGGCCACTCCCGCCAGTTGGTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGCAAATCGGCGAGGCGTTAATCAGAACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATg                        <  2:436300/284‑1 (MQ=255)
                                                                                                                                                                                                                                                     aGTGGGCGGCGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCgg                    >  1:1926479/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         ggcggcGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAgg                                                   <  1:459120/253‑1 (MQ=255)
                                                                                                                                                                                                                                                         ggcggcGACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGAGGCAGCCAGAATGCCGGa                   >  1:2654941/1‑285 (MQ=255)
                                                                                                                                                                                                                                                              cgACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCa           >  1:130781/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              cgACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCa           >  2:1283210/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              cgACTTCCGCCAGTTGTTCGCGCGAGACGTCAAGATGCGTCACCAGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCa           >  1:276022/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                      gCCAGTGATTCGCGCGAGACGTCCAGTTGCGTCCCCCGGCGGACAATCGGCGAGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCATCCCGCCAc  <  2:1478191/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                
AGACCGTATCGATATCCTGCAACAGGGCCGGTAGGTTATCCGGCCAGCTGAGATCGACTTTATGGCAACTGACGTTTGCCAGTTGCAGCTTTGCAAGCCTGTCGACATGACGTGCCGCCGCCAGGATCTGATGCCCTTGCTGGCTGAGTGTGCGCACCAGATGCTGACC‑AATGTAGCCACTGGCACCGAGAACTAAAATGCGTTGCGGCACGTCTCTCTCCTTAACGCGCCAGGAATGCACGCCAGTGGGCGGCGACTTCCGCCAGTTGTTCGCGGCTGACGTCAAGATGCGTCACCAGGCGGACAATCGGGCTGGCGTTAATCAGCACGTTTCTCGCTTTCATGTATTCGCCTAACGCGGCAGCATTTTCTTCCCCGACGCGAACAAACAGCATATTGGTGTCCTGACGCATCACATCCGCGCCTGCTTCACGCAGCTGCTCCGCCATCCAGGCAGCGTTGTCGTGGTCTTCCTGCAAGCGCGCAACGTTATTTTTCAGGGCATATATCCCGGCGGCAGCCAGAATGCCGGACTGGCGCATCCCGCCAC  >  CP042583/770966‑771515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A