Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,801,474 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,801,4740GC100.0% 658.5 / NA 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (145/132);  total (145/132)
*CP0425831,801,4750CG99.6% 653.9 / NA 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (144/132);  total (145/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,801,4760TA99.6% 658.1 / NA 277intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (144/132);  total (145/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 277 total aligned reads displayed.

ACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGTTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAAGC‑TCTGCCCGGTGGTGTAATTTGCGCCCTCGCTAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTC  >  CP042583/1801196‑1801755
                                                                                                                                                                                                                                                                                      ||||                                                                                                                                                                                                                                                                                        
aCTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGCACTGTTGATTCGCCAACACAAAGCCGCCATCCCCTATCAACG‑ACTGCCCgg                                                                                                                                                                                                                                                                                  >  2:1874028/1‑289 (MQ=255)
 cTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCgat                                                                                                                                                                                                                                                                                 >  1:1074935/1‑287 (MQ=255)
             gATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTgc                                                                                                                                                                                                                                                                     <  1:869571/289‑1 (MQ=255)
             gATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTgc                                                                                                                                                                                                                                                                     <  1:1677632/289‑1 (MQ=255)
               ttCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGCAGAAAAAGCCGGATCCCCCGGCGTAAAACCATTCCCCTCGGTAAGGCCTTCGCGCCGCCTCCGCCATCCGAAGTACCATGCCTGATACCACGCTTGTTCGTCTTTTCATCCCGACCCAGATCTTACCCAATCAAATCACCACCCCCCCCCCTGCCCTATTCTCGGTTGAACTGTGGCTTCGCCTACCCACAGCCGCCATCCACTA‑CAACCGTCTTCCCCGTCGTGGAAtttcac                                                                                                                                                                                                                                                                    >  2:2690993/1‑285 (MQ=255)
                                    tggGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCCCGATCCACTATCCACG‑ACTCGCCGGCGGTGTATCTTGCGCCC‑CTCTACTAAAGCCAcccc                                                                                                                                                                                                                                              >  2:1595975/1‑288 (MQ=255)
                                          tGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAgg                                                                                                                                                                                                                                        >  1:1876967/1‑288 (MQ=255)
                                          tGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAg                                                                                                                                                                                                                                         >  1:615068/1‑287 (MQ=255)
                                          tGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAg                                                                                                                                                                                                                                         >  1:2049812/1‑287 (MQ=255)
                                             gcgggtggCGGAAACTACGAGGGAAGAAAAAGCCGGATAATCCGGCGGAAAACCATTGCCCTGGATAAGGCGTTCGCGCAGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTgg                                                                                                                                                                                                                                    <  2:1074935/286‑1 (MQ=255)
                                               tggtggCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCa                                                                                                                                                                                                                                  <  1:570573/289‑1 (MQ=255)
                                               tggtggCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCa                                                                                                                                                                                                                                  <  1:834616/289‑1 (MQ=255)
                                               tggtggCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCa                                                                                                                                                                                                                                  <  1:173313/289‑1 (MQ=255)
                                                         aaCGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCg                                                                                                                                                                                                                        <  1:2533542/289‑1 (MQ=255)
                                                                     agaaAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCaaaa                                                                                                                                                                                                             <  1:499143/288‑1 (MQ=255)
                                                                       aaaaaGCCGGATCCTCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAAcgc                                                                                                                                                                                                          <  2:2449141/289‑1 (MQ=255)
                                                                              cGGATCATCAGGCTTACAACCATTGCCCTGGATAGGGCGTTCAGGCCCCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAgg                                                                                                                                                                                                   <  2:1089722/289‑1 (MQ=255)
                                                                                gATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGAAAGGGa                                                                                                                                                                                                 >  1:2722409/1‑289 (MQ=255)
                                                                                                 ccATTGCCCTGGATAAGGCGGTCGCGCCGCATCCGACATCCGGCGTACCATGGCTAATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTc                                                                                                                                                                                <  2:2321106/289‑1 (MQ=255)
                                                                                                   aTTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCgg                                                                                                                                                                              >  2:2122069/1‑289 (MQ=255)
                                                                                                   aTTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCgg                                                                                                                                                                              >  1:1213175/1‑289 (MQ=255)
                                                                                                     tGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTgcg                                                                                                                                                                                                                                                                    >  1:444698/1‑202 (MQ=255)
                                                                                                     tGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTgcg                                                                                                                                                                                                                                                                    <  2:444698/202‑1 (MQ=255)
                                                                                                        ccTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCtt                                                                                                                                                                          <  2:1754171/288‑1 (MQ=255)
                                                                                                            gATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTACTTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCCGGCAATCTCATGCGTTTCGCCAAAACGCCGCAAAGGAATCGCAGGCCCCGCCTCGGGGTTCCCg                                                                                                                                                                      >  2:2238689/1‑288 (MQ=255)
                                                                                                             aTAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCCGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGt                                                                                                                                                                     <  1:1521008/288‑1 (MQ=255)
                                                                                                                aGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCACTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCt                                                                                                                                                                 <  2:1225161/289‑1 (MQ=255)
                                                                                                                 ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCcac                                                                                                                                                                                                                                                 >  1:2454692/1‑208 (MQ=255)
                                                                                                                 ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAgg                                                                                                                                                                                                                                        <  2:700402/217‑1 (MQ=255)
                                                                                                                 ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAg                                                                                                                                                                                                                                         <  1:1017276/216‑1 (MQ=255)
                                                                                                                 ggCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCtt                                                                                                                                                                          >  1:714799/1‑279 (MQ=255)
                                                                                                                     ttCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCa                                                                                                                                                             >  1:1147981/1‑288 (MQ=255)
                                                                                                                      tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCg                                                                                                                                                                                                                                                                                   >  1:209491/1‑170 (MQ=255)
                                                                                                                      tCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                                                                            >  1:96284/1‑288 (MQ=255)
                                                                                                                                        ccGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTc                                                                                                                                                                                      <  1:2329555/244‑1 (MQ=255)
                                                                                                                                          ggAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATtggcgtg                                                                                                                                        >  1:196636/1‑288 (MQ=255)
                                                                                                                                           gAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCACGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGCCTTCGCGTCGGGCATCACGCAGCTGTCATACCTACCATTCAGtggatgtgc                                                                                                                                      >  1:2669137/1‑283 (MQ=255)
                                                                                                                                              tACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                                                                   <  2:96284/289‑1 (MQ=255)
                                                                                                                                              caCCATGCGTGGTTAGACGCTTGTGCGTAGTTTGATCCCCACCAAAATAGTGCCCAATAAAACATCCCCGCCCCTCACTGCGCTAGTCTGGGTTGAACTGTGGTTGCGCAAACATAAACCCGCCATCCACTATCGACG‑ACTGCCCGGTGGTGTAATTTGCGCCCCCCGAAC‑AAGGCCGCACCGCCAGGCTGGCAATTCCATGCGTTGCGCCAAAACGCCGCAAGGGAAGCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                                                                   <  2:391961/288‑1 (MQ=255)
                                                                                                                                               aCCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCTACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGAGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCTCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                                                                   <  1:2504175/288‑1 (MQ=255)
                                                                                                                                                   tGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATtggcgt                                                                                                                                         <  1:796754/278‑1 (MQ=255)
                                                                                                                                                     ccTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCCCGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACg                                                                                                                                                                      <  1:1035109/247‑1 (MQ=255)
                                                                                                                                                        gATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCggtggt                                                                                                                                                                                                                                                                              <  2:55277/141‑1 (MQ=255)
                                                                                                                                                              acgCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAAtcga                                                                                                                                                                                            >  2:1637172/1‑213 (MQ=255)
                                                                                                                                                               cgCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACt                                                                                                                   >  2:114006/1‑288 (MQ=255)
                                                                                                                                                                  ttGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGt                                                                                                               <  1:1503180/289‑1 (MQ=255)
                                                                                                                                                                         tCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCCCTGTCATCCATGCCATTCATTGGCGTGGCCATCGCCCCAGGCGCGCCTGCCTTCCCCaa                                                                                                        >  2:2416943/1‑289 (MQ=255)
                                                                                                                                                                          cTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCa                                                                                                                                                         <  2:260081/239‑1 (MQ=255)
                                                                                                                                                                              tCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAATCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCt                                                                                                   <  2:1356827/289‑1 (MQ=255)
                                                                                                                                                                              tCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCt                                                                                                   <  1:114006/289‑1 (MQ=255)
                                                                                                                                                                               cATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGt                                                                                                                                                                     >  1:1851729/1‑222 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCCAGGGACTCGAAGGCCCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCACTGCCCTGGCGATCCCCCCAGGCCCCACTGCGTTCCCCACCATCTTCCGCCt                                                                                            >  2:1789906/1‑288 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGt                                                                                                                                                                     <  2:1169828/215‑1 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGt                                                                                                                                                                     >  1:1169828/1‑215 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCAt                                                                                                                                                            >  2:2503474/1‑224 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGAt                                                                                                                                   >  2:143419/1‑249 (MQ=255)
                                                                                                                                                                                      aCCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTg                                                                                           >  1:1061133/1‑289 (MQ=255)
                                                                                                                                                                                           aatcgtACCCAATGCAATTCACACACACCTAACGGCGCTAGTCTGGGTTGAAGTGTGAATTCTGACACGTAAAGCGGACATACACTATCCACG‑AGTGCGCGGGGGTGTAATTAGGGCCCGCCGAAC‑ACGGCCACGCCGCCAGGATGGCAATCTAATGCGTTGCGCAAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                                                                        <  2:1407891/282‑1 (MQ=255)
                                                                                                                                                                                                  cccAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCa                                                                                                                                                                                                                                  >  2:2347055/1‑142 (MQ=255)
                                                                                                                                                                                                  cccAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCcgcg                                                                                                                                                                                  <  2:49385/190‑1 (MQ=255)
                                                                                                                                                                                                    cAATGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCtt                                                                                                                                                                          <  2:1474538/196‑1 (MQ=255)
                                                                                                                                                                                                     aaTGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                                                                        >  2:846389/1‑277 (MQ=255)
                                                                                                                                                                                                      aTGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCa                                                                           <  1:1422423/289‑1 (MQ=255)
                                                                                                                                                                                                       tGAAATATCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCa                                                                           >  1:2351538/1‑288 (MQ=255)
                                                                                                                                                                                                            tatCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCtt                                                                     >  1:886672/1‑289 (MQ=255)
                                                                                                                                                                                                             atCCACGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATACAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCttt                                                                    <  1:994159/289‑1 (MQ=255)
                                                                                                                                                                                                                 aCGCACCTCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATtggcgtggcg                                                                                                                                     >  2:1531280/1‑220 (MQ=255)
                                                                                                                                                                                                                  cGCACCTCACTGCGCTATTCTGGGTTGAACTGGGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTa                                                               <  1:559077/289‑1 (MQ=255)
                                                                                                                                                                                                                        ttaCTGCGCTATTCTGGGTTGGACTGAGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCCTGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCAc                                                         <  1:1243016/287‑1 (MQ=255)
                                                                                                                                                                                                                        tCACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCCAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGTCCCAGGCGCTACTGCGTTCCCCAAACTCTTATGCCTGACCAGCCCCCGCGCCATCGCTTTGGCTCAcccc                                                          >  2:605625/1‑287 (MQ=255)
                                                                                                                                                                                                                         cACTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCAcc                                                        <  1:1789906/289‑1 (MQ=255)
                                                                                                                                                                                                                         cACTGCGCTATTCTAGGTTGAACTTTGGAGTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCAcc                                                        <  2:2722409/289‑1 (MQ=255)
                                                                                                                                                                                                                          aCTGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCaa                                                                                                        <  2:1980075/240‑1 (MQ=255)
                                                                                                                                                                                                                            tGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGAcc                                                                                        <  2:2056852/254‑1 (MQ=255)
                                                                                                                                                                                                                            tGCGCTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGa                                                      >  1:215371/1‑288 (MQ=255)
                                                                                                                                                                                                                            tGCGCTATTCTGGGGTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGAGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCAAAAACGCCGCAAGGGAATCGAAGGCTCAGCGTCGGGCTTCACGTCGCTGTCATCTATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTAACCAAAATATTATGGCTGACGAGCACCAGCGACAGCGATTTGGTTAACCCACAGat                                                     >  1:1535019/1‑288 (MQ=255)
                                                                                                                                                                                                                                 tATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCCCCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCAt                                                >  1:1328866/1‑289 (MQ=255)
                                                                                                                                                                                                                                 tATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCt                                                                      <  2:626325/267‑1 (MQ=255)
                                                                                                                                                                                                                                 tATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCAt                                                >  1:689362/1‑289 (MQ=255)
                                                                                                                                                                                                                                 tATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCAt                                                >  2:766127/1‑289 (MQ=255)
                                                                                                                                                                                                                                  atgcggggTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAACTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATg                                               <  1:1468849/284‑1 (MQ=255)
                                                                                                                                                                                                                                   ttCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGt                                              >  1:318570/1‑289 (MQ=255)
                                                                                                                                                                                                                                   ttCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGt                                              >  1:1270534/1‑289 (MQ=255)
                                                                                                                                                                                                                                        ggTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCt                                                                                                                                                                 <  1:1446374/169‑1 (MQ=255)
                                                                                                                                                                                                                                        ggTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAg                                          <  1:2499337/288‑1 (MQ=255)
                                                                                                                                                                                                                                         gTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGc                                         <  1:2122069/288‑1 (MQ=255)
                                                                                                                                                                                                                                           tGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCgg                                       <  1:1620744/288‑1 (MQ=255)
                                                                                                                                                                                                                                           tGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGGTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCg                                        >  1:369583/1‑287 (MQ=255)
                                                                                                                                                                                                                                            gAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCt                                     <  2:1270534/289‑1 (MQ=255)
                                                                                                                                                                                                                                             aaCTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCa                                                                                                                                                                                                                                  >  2:1036161/1‑99 (MQ=255)
                                                                                                                                                                                                                                             aaCTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGCTCGCCCCAGGCGCGACTGCGTTCACCCAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGct                                        >  1:2161673/1‑284 (MQ=255)
                                                                                                                                                                                                                                                  tgGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCACGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGCTCACCTACATCTTATGCCTGACCAGCCCCACCGCCATCGCTTTGGTTAACCCACCGAGCGCCGGCTTAGCGGCTgtgtcg                               >  2:30936/1‑287 (MQ=255)
                                                                                                                                                                                                                                                  tgGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCa                                                                                                         >  2:561725/1‑215 (MQ=255)
                                                                                                                                                                                                                                                  tgGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCTGTGTAg                               >  1:2233201/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  tgGATTCGCCAACATAAAGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCTGTGTAg                               >  1:2248237/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   aGCCGCCATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCCCTTTGGTTACCCCACCGAGCGCGTGTTTAGCGGCTGTGTAGGGGCCGGCATCCGGCa               >  2:1910851/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        ccATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCg                                                                        >  1:55322/1‑226 (MQ=255)
                                                                                                                                                                                                                                                                         cATCCACTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCATCTCCAGCGCCATCGCTTTCGCTAACCCACCGAACACATGTTTACGGGCCTGGTAGGCCTCGGCATTCGGCAgcggcgg        >  2:1969740/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                          acccACTATCAACG‑AGTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑ACAGCCACACACCCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTa       <  2:215371/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                               cTATCAACG‑ACTGCCCGGTGGTGTAATTTGCGCCCTCCGAAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATCGAAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCCTCGCTTTGGTTAACCCACCGAGCGCCTGTTTAGCTGCTGTGTAGGCGCTGGCATCCTGCCGCGGGGTACGTTc  >  2:2464720/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                      ||||                                                                                                                                                                                                                                                                                        
ACTGGGTCTGGTTGATTCTGGTCGTGGTTCTGGTGGTGGGCGTGCGCTGGTGGCTGAAACGACGCGGGAAGAAAAAGCCGGATCATCAGGCGTAAAACCATTGCCCTGGATAAGGCGTTCGCGCCGCATCCGACATCCGGAGTACCATGCCTGATACGACGCTTGTGCGTCTTTTCATGCCGACCAAAATATTACCCAATGAAATATCCACGCACCTCACTGCGTTATTCTGGGTTGAACTGTGGATTCGCCAACATAAAGCCGCCATCCACTATCAAGC‑TCTGCCCGGTGGTGTAATTTGCGCCCTCGCTAC‑AAAGCCACACCACCAGGCTGGCAATCTCATGCGTTGCGCCAAAACGCCGCAAGGGAATGCTAGGCTCCGCGTCGGGCTTCACGTCGCTGTCATCCATGCCATTCATTGGCGTGGCGATCGCCCCAGGCGCGACTGCGTTCACCAAAATCTTATGCCTGACCAGCTCCAGCGCCATCGCTTTGGTTAACCCACCGAGCGCATGTTTAGCGGCTGTGTAGGCGCTGGCATCCGGCAGCGGCGTATGTTC  >  CP042583/1801196‑1801755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A