Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,963,277 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,963,2770GC99.6% 634.1 / NA 267intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (132/134);  minor base A (1/0);  total (133/134)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,963,2780CG98.9% 611.1 / ‑6.6 267intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base G (130/133);  total (133/134)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,963,2790TA100.0% 635.1 / NA 267intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (133/134);  total (133/134)

Only 100 of 267 total aligned reads displayed.

AGCGCGATGTAACATCGCCAGGCTATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGGCTCA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCGCTCAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACGCTGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCGCTCGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGT  >  CP042583/1963001‑1963557
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
  cgcgATGTAACATCGCCAGCGAATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTgcgc                                                                                                                                                                                                                                                                            >  1:1564840/1‑289 (MQ=255)
                 ccagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTggctgt                                                                                                                                                                                                                                                              >  1:1106756/8‑284 (MQ=255)
                 ccagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTa                                                                                                                                                                                                                                                              >  1:2642387/8‑288 (MQ=255)
                  cagcgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTAc                                                                                                                                                                                                                                                             <  1:168813/282‑1 (MQ=255)
                  aacggaaaaaaCAGAGACAAACAACCGCCCAAAGGTAGAGATAACGGTAATTACCGGTACAAACGAGCAGGTGCCGAACAGAGTCATAAATTCGCCGACGAGTTGACAGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGCCA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGCCCGCCCATCAAGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTAc                                                                                                                                                                                                                                                             <  2:928916/280‑1 (MQ=255)
                     cgaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgc                                                                                                                                                                                                                                                          >  1:2254021/4‑288 (MQ=255)
                      gaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgcg                                                                                                                                                                                                                                                         <  1:1368238/286‑1 (MQ=255)
                      gaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcg                                                                                                                                                                                                                                                           <  2:629843/284‑1 (MQ=255)
                      gaataAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcg                                                                                                                                                                                                                                                           <  1:1636510/284‑1 (MQ=255)
                         taAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCt                                                                                                                                                                                                                                                     <  1:53208/289‑1 (MQ=255)
                           aaCAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCAACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTgg                                                                                                                                                                                                                                                   <  2:1476039/289‑1 (MQ=255)
                                        ccaaGCCCAAAGGTAAGGATAACGGTAATAACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACGGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGc                                                                                                                                                                                                                                      <  2:1602762/286‑1 (MQ=255)
                                        aCCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAatc                                                                                                                                                                                                                                                                        <  1:459518/255‑1 (MQ=255)
                                         ccAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAATCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAGCCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGc                                                                                                                                                                                                                                      <  2:709957/288‑1 (MQ=255)
                                          cAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                                                                                                                                    <  1:2195955/289‑1 (MQ=255)
                                          cAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                                                                                                                                    <  2:1372092/289‑1 (MQ=255)
                                            gCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAatc                                                                                                                                                                                                                                                                        >  2:2447000/1‑251 (MQ=255)
                                            gCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAatc                                                                                                                                                                                                                                                                        <  1:2447000/251‑1 (MQ=255)
                                               cacaggtgatagaaaCGGTAATCACCGGTACAGCCGGGTAGGATCCGAACAGGACAATAAATTCAACCACGAAGTGACCGGGGCCAGGCATCCCAAGCGTTGTCAC‑CGCCAAGAACAGCGCCA‑GTGCTGGAAGCCAGTTCATCTTGCGCCACAGACCGCCCATCATGCGAATGTGGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGGGGGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAGCTGGCTGCCTgt                                                                                                                                                                                                                               <  2:466298/276‑1 (MQ=255)
                                               cAAAGGAAGAGATAAAGGTAATCACCGTTACAACCTGTAAGCTGCCGAACAGAAGCAAAAATTCGCCGACGAAGTTTCCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAGGAACAGCTACA‑TTGCTGGCAGCCATTTCGTCGTGCTCCACATACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCGATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGgt                                                                                                                                                                                                                               <  2:2332994/289‑1 (MQ=255)
                                                       gagaTAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTAc                                                                                                                                                                                                                                                             >  2:1078570/1‑251 (MQ=255)
                                                       gagaTAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTAc                                                                                                                                                                                                                                                             <  1:1078570/251‑1 (MQ=255)
                                                            aaCGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTg                                                                                                                                                                                                                                                                               <  1:1042821/228‑1 (MQ=255)
                                                            aaCGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATc                                                                                                                                                                                                                  <  1:2586223/289‑1 (MQ=255)
                                                              cGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCa                                                                                                                                                                                                                 >  1:2292900/1‑288 (MQ=255)
                                                                 ttaccaacGGTACAACCTGGGAGCTGCCGACCATAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCa                                                                                                                                                                                                              <  2:2713575/281‑1 (MQ=255)
                                                                 tAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACC‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCa                                                                                                                                                                                                              <  1:515087/288‑1 (MQ=255)
                                                                  aaTCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGACAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGACCATCATGCGCATGTCGCGGGTCTGGATACGTTCATAAAGCTGCCCACACAGAATAAACAGACAAGCCGGCGACAAACCGTGCGACATCATCCGGATTACCGCGCCCTGGCAGGCCAACTGGCTGCCGGTGTAGCTTGGCATCAGCAc                                                                                                                                                                                                             >  2:372761/1‑288 (MQ=255)
                                                                   aTCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGCAAGCAATCAGCCCGa                                                                                                                                                                                                           >  2:1455004/1‑289 (MQ=255)
                                                                   aTCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGa                                                                                                                                                                                                           >  1:2672000/1‑289 (MQ=255)
                                                                   aTCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCAGGTAGGCACACTGGACTCCGGTGTAGATAGCCATCAGCCCGa                                                                                                                                                                                                           >  2:2044915/1‑289 (MQ=255)
                                                                        cGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACcgcg                                                                                                                                                                                                                                                         >  2:2021305/1‑238 (MQ=255)
                                                                        cGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGTTAGCAATCAGCACGAAGcc                                                                                                                                                                                                       >  2:1439342/1‑288 (MQ=255)
                                                                           tACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGCTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAAACATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGACGTAGATAGCAATCAGCACGAAGCACAtg                                                                                                                                                                                                   >  2:1756422/1‑289 (MQ=255)
                                                                                ccTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGa                                                                                                                                                                                              <  1:1439342/289‑1 (MQ=255)
                                                                                  tGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTgg                                                                                                                                                                                                                                                   >  2:1161668/1‑234 (MQ=255)
                                                                                  tGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTgg                                                                                                                                                                                                                                                   <  1:1161668/234‑1 (MQ=255)
                                                                                     aaGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCCTCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATTAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGACGCCCCAGTGGTAAAcc                                                                                                                                                                                          >  1:725927/1‑287 (MQ=255)
                                                                                          gCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCgcgc                                                                                                                                                                                                                                                        >  2:155073/1‑221 (MQ=255)
                                                                                          gCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCCACAACCCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTTCCGGTGTCGATAGCAATCAGCCCGAAGCCCACGGGGGAAAccgagggg                                                                                                                                                                                    >  2:2514687/1‑282 (MQ=255)
                                                                                            cGAAAAGAACCATAAAAGCGCCAACGAGGTTACCGGGGCCAGACATCCCAAGCCGTGCCAC‑CGCAAAGAACGGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGA‑TACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAg                                                                                                                                                                                 <  2:217050/289‑1 (MQ=255)
                                                                                                          aactCGCCGACGAAGTTACCGTTGACAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGTAGCCATTTCATCTTGCTCCACAGACCGCCCATAATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACCGGCCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGtt                                                                                                                                                                    <  1:1312189/286‑1 (MQ=255)
                                                                                                          aaTTCGCCGACGAAGGTACCGGGGCCAGGCATCCCAAGCGTTGCCCC‑CGCAAAGAACAGGGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGtt                                                                                                                                                                    <  2:523805/289‑1 (MQ=255)
                                                                                                          aaTTAGCCAACGAAGTTACCGGGGCCAGGCAACCCAAGCGTTGCCAC‑CGCCAAGAACCGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGtt                                                                                                                                                                    <  2:1135912/289‑1 (MQ=255)
                                                                                                                    cgaAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGt                                                                                                                                                          <  1:847238/289‑1 (MQ=255)
                                                                                                                           aCCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCg                                                                                                                                                   <  1:145612/289‑1 (MQ=255)
                                                                                                                            cgtgtgcacggccgcccAAGCG‑TGCCGCGCGCAAAGAGCAGGGACA‑GAGCTGGCAGCCAGTTCCTATGCATCCACAGACGGGCGATACTGCGCATGTCGCGGGAATGGATACGTTCATAAAGCGGACCAATAAGAATACACAGACCCGCCGCCGACAAACCGTGCGCAATCATCGGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGGGTAGATAGCAAGCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGa                                                                                                                                                  <  2:1915233/275‑1 (MQ=255)
                                                                                                                               gTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCAGGATTAACGCGCACTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGACAATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTCTATATACGTCTGAGCGAAg                                                                                                                                                >  1:2319107/1‑288 (MQ=255)
                                                                                                                                       cATCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCa                                                                                                                                        <  1:2550750/288‑1 (MQ=255)
                                                                                                                                        aacccAAGGGTGGCCAC‑GCAAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGGCCGCCCATCATGCGCAGGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                                                                                                                                      <  2:2730158/287‑1 (MQ=255)
                                                                                                                                        aTCCCAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                                                                                                                                      <  1:2024550/289‑1 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTg                                                                                                                                                                                                                                    >  2:228448/1‑193 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAccg                                                                                                                                                                                         >  2:1225016/1‑234 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAccg                                                                                                                                                                                         <  1:1225016/236‑3 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAg                                                                                                                                                <  2:1291901/277‑1 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGc                                                                                                                                     >  2:585349/1‑288 (MQ=255)
                                                                                                                                          cccAAGCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCa                                                                                                                                    <  1:2373765/289‑1 (MQ=255)
                                                                                                                                          cccAAACGTTCACAC‑CGCAAAGAACACAGACA‑TTTCTGGCAGCCATTTTACCTTGGTCCACAGACCCGCCAACAATGGCATGGTGCTGGTATTGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCACCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCAAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCa                                                                                                                                    <  2:1094021/289‑1 (MQ=255)
                                                                                                                                               gCGTTGCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACg                                                                                                                                      <  1:1525068/282‑1 (MQ=255)
                                                                                                                                                 gtgtccAC‑CGCAAAGATCA‑GCTAACGTGCTAGCAGCCATGTCATCTTGTTCCACAGACCGCCCATCATGCGCATGTAGCTGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTag                                                                                                                              <  2:1251920/284‑1 (MQ=255)
                                                                                                                                                    gCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTagaaga                                                                                                                          >  1:1811682/1‑289 (MQ=255)
                                                                                                                                                    gCCAC‑CGCAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTagaag                                                                                                                           >  1:2047713/1‑288 (MQ=255)
                                                                                                                                                            cAAAGAACAGCGACA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGAt                                                                                                                   <  1:585349/289‑1 (MQ=255)
                                                                                                                                                                 aacagcgacA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTCGCTGCCGGTGTAGATAGCAATCAGCCCGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCTAAGGCCATCCACGCACCGTAGAAGATGCCGCTAaca                                                                                                               >  2:2673322/9‑288 (MQ=255)
                                                                                                                                                                  actggCACA‑GGGCTGACAGCAAGTTACTCTTGCTCCACAGACCGCCCATCATGGGCATGGCGCGGGTATGGATACGTACATAAAGCGTACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCGGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGTTAGCAAGCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATaa                                                                                                                 <  2:648474/282‑1 (MQ=255)
                                                                                                                                                                    agcgacA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCAtgtg                                                                                                                                                                                                 >  1:361303/6‑203 (MQ=255)
                                                                                                                                                                      cgacA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGc                                                                                                                                                                                                                                      >  2:567510/4‑164 (MQ=255)
                                                                                                                                                                      cgacA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAg                                                                                                          <  2:1840783/285‑1 (MQ=255)
                                                                                                                                                                       gacA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAg                                                                                                          <  2:1555068/285‑1 (MQ=255)
                                                                                                                                                                            gTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCa                                                                                                                                                                                                                                                                           >  2:1934703/1‑122 (MQ=255)
                                                                                                                                                                            gTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACAt                                                                                                    >  1:1903036/1‑289 (MQ=255)
                                                                                                                                                                              gCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACAt                                                                                                    <  2:186747/287‑1 (MQ=255)
                                                                                                                                                                                 ggCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCaa                                                                                               <  1:1517043/289‑1 (MQ=255)
                                                                                                                                                                                     gCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGtt                                                                                                                                                                    <  1:603606/216‑1 (MQ=255)
                                                                                                                                                                                       cATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAGCCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGTAAACACCAAGCCAAGTAGCAATTGgc                                                                                          >  2:360142/1‑288 (MQ=255)
                                                                                                                                                                                       cATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGgc                                                                                          >  1:954790/1‑288 (MQ=255)
                                                                                                                                                                                         tttCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGCAGAAGATGCCGATAACACCCAGCCACATAGCAATTGgcgc                                                                                        >  2:756667/1‑288 (MQ=255)
                                                                                                                                                                                                           aCCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTg                                                                                                                                                                                                                                                    >  1:1930107/1‑114 (MQ=255)
                                                                                                                                                                                                           aCCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTc                                                                     >  1:712523/1‑289 (MQ=255)
                                                                                                                                                                                                              gCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                                                                                                                                              >  2:283740/1‑213 (MQ=255)
                                                                                                                                                                                                              gCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                                                                                                                                              <  1:283740/213‑1 (MQ=255)
                                                                                                                                                                                                                   caagcggacgggcgcgGGTATGACTCCGTTCAACAACCTGACCCCAAAGAGAAAACGGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAg                                                             <  2:954790/277‑1 (MQ=255)
                                                                                                                                                                                                                       gcgcATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                                                                                                                                              >  1:80468/1‑204 (MQ=255)
                                                                                                                                                                                                                       gcgcATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGc                                                                                                                                              <  2:80468/204‑1 (MQ=255)
                                                                                                                                                                                                                       gcgcATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGc                                                                                                         >  1:38535/1‑241 (MQ=255)
                                                                                                                                                                                                                          cATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTgccgacg                                                                          <  1:1294252/269‑6 (MQ=255)
                                                                                                                                                                                                                          cATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGGCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACGCATCCGACGCGTTCCGGAACAGCGGCAgg                                                      >  2:2353570/1‑289 (MQ=255)
                                                                                                                                                                                                                             gTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATaa                                                                                                                 >  1:996697/1‑227 (MQ=255)
                                                                                                                                                                                                                                              gTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAAc                                                                                                                                                                                           <  1:1253017/136‑1 (MQ=255)
                                                                                                                                                                                                                                              gTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGCGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATaa                                                                                                                 >  2:2081763/1‑210 (MQ=255)
                                                                                                                                                                                                                                               ttCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCa                                                                                                                                                                          <  1:1426187/152‑1 (MQ=255)
                                                                                                                                                                                                                                                  aTAAAGCTGACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCAACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAGCGGCAGGGGGAAAAGCAGCAACCCGTAAGcc                              >  2:1345983/1‑288 (MQ=255)
                                                                                                                                                                                                                                                          gaacacaAAACATAACCAAACGCGCCGCCGACAAACCCGGCGCAATCAGCTGGCTTACCGCGCCCTGGTAGGCAAACTGGCTGCCGGTGTAGATAGCAAACAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGttt                       <  2:1737058/285‑1 (MQ=255)
                                                                                                                                                                                                                                                          gACCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAgg                                                                                                                                                                                <  1:641136/135‑1 (MQ=255)
                                                                                                                                                                                                                                                           aCCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAg                                                                                                          >  2:1410686/1‑204 (MQ=255)
                                                                                                                                                                                                                                                           aCCACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATAAGACGTTTGATAACGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCCCGAACTCTGCCGACCCGTTCGGGAACAGCGGCAGGGAGAAACGCACCAAACCGTAAGCGTCAGttttg                     >  2:2138017/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            ccACAAAGAATAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCa                    >  1:1996760/1‑289 (MQ=255)
                                                                                                                                                                                                                                                               caAAGAACAAACACCCCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCa                 <  1:2093880/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     aTAAACAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCCGACGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTGTTCAGCAAGATc            >  1:2412063/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                       aaaCAGACCCGCCGCCGACAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCAt                                                                                                                                                                                                    >  2:240396/1‑102 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                      
AGCGCGATGTAACATCGCCAGGCTATAAACAGATGCAAAGACCAGCCCAAAGGTAGAGATAACGGTAATCACCGGTACAACCTGGAAGCTGCCGAACAGAATCATAAATTCGCCGACGAAGTTACCGGTGCCAGGCATCCCAAGCGTTGCCAC‑CGCAAAGAACAGGCTCA‑GTGCTGGCAGCCATTTCATCTTGCTCCACAGACCGCCCATCATGCGCATGTCGCGGGTATGGATACGTTCATAAAGCTGACCACAAAGAATAAACAGACCCGCCGCGCTCAAACCGTGCGCAATCATCTGGATTACCGCGCCCTGGTAGGCCAACTGGCTGCCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACGCTGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAGGCCATCCACGCACCGTAGAAGATGCCGATAACACCCAGCCACATAGCAATTGGCGCGAACTCTGCGCTCGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGT  >  CP042583/1963001‑1963557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A