Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,964,201 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,964,2010GC98.9% 862.9 / NA 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/4);  new base C (180/183);  total (180/187)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,964,2020CG99.7% 862.1 / NA 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (180/185);  total (180/187)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,964,2030TA99.7% 876.7 / NA 367intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (179/187);  minor base C (1/0);  total (180/187)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 367 total aligned reads displayed.

ACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCAGCTACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGGCTCAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGACTATAACCGCCCTGCAACCACAGTTGCAGGCTCAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACA  >  CP042583/1963921‑1964483
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                        
     tCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGcc                                                                                                                                                                                                                                                                                   <  2:843294/285‑1 (MQ=255)
                     cGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGa                                                                                                                                                                                                                                                                >  2:2491773/1‑288 (MQ=255)
                           tAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATGAgcgc                                                                                                                                                                                                                                                         >  1:583871/1‑289 (MQ=255)
                           tAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGGCAATCCCATGGTGATCAgcg                                                                                                                                                                                                                                                          >  2:848896/1‑288 (MQ=255)
                              cgccgcCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGa                                                                                                                                                                                                                                                       >  1:1813823/1‑288 (MQ=255)
                                  gccacgggtCCACATCAGGTTGAGGGTGAAGACGCCCTAATAGTTTTCGATCCCTTTCCACGAACGTAGTACGGCCAGCACACCGAGGAGACCGGTCAGGACGACCATCAGCAGCGGCAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCa                                                                                                                                                                                                                                                   <  2:1820378/280‑1 (MQ=255)
                                  gccCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCa                                                                                                                                                                                                                                                   >  1:2058839/1‑288 (MQ=255)
                                             acaTCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGt                                                                                                                                                                                                                                                                              >  1:422472/1‑250 (MQ=255)
                                             acaTCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCtt                                                                                                                                                                                                                                       >  1:1809499/1‑289 (MQ=255)
                                             acaTCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGAGGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATCCAGACTGCCACCGCGGAATTCCGGCGGATTGCGTGAGTGAATAACCGCCCTCCAACCACAGTTGCAGCGACAGCGCCACCGCCAAACCCACGGTGGTCCGCGCGATCCATCGTGGCCCCtt                                                                                                                                                                                                                                       >  2:1469515/1‑289 (MQ=255)
                                              caTCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTg                                                                                                                                                                                                                                      >  2:544360/1‑289 (MQ=255)
                                                  aGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGt                                                                                                                                                                                                                                                                              >  2:2617202/1‑245 (MQ=255)
                                                    gTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGGGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAgcg                                                                                                                                                                                                                                                          <  2:2657684/263‑1 (MQ=255)
                                                      tGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCaaa                                                                                                                                                                                                                              >  1:2472847/1‑289 (MQ=255)
                                                        aGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGc                                                                                                                                                                                                                            >  2:1138713/1‑289 (MQ=255)
                                                              aagacgCCCGGTTAGTTTGCGCTCTCGTGCCAAAGACATAGTCCCGCAAGCACACCGCGCAGAACGGCCAGCACGACCAACAGCAGCGGCAGCCCGACAATCGCGGGAAGAATAGGCAAACCAAAACGAGGGATCAACGGCATGTCGAATTCAGACTGCAACTGCGGAACTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCgg                                                                                                                                                                                                                      <  2:1188517/289‑1 (MQ=255)
                                                              aagaagCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCa                                                                                                                                                                                                                                                   <  2:2472739/260‑1 (MQ=255)
                                                               agaagCCCTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCgg                                                                                                                                                                                                                      <  1:474496/288‑1 (MQ=255)
                                                                     ccTGATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGc                                                                                                                                                                                                                 <  1:1138713/287‑1 (MQ=255)
                                                                        gATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATc                                                                                                                                                                                                                                                                         <  2:1350524/228‑1 (MQ=255)
                                                                        gATATTTTTCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATc                                                                                                                                                                                                                                                                         >  1:1350524/1‑228 (MQ=255)
                                                                               ttCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGaa                                                                                                                                                                                                      >  2:1869668/1‑288 (MQ=255)
                                                                               ttCGATCTCTTTCCACGAACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGaa                                                                                                                                                                                                      >  1:1167857/1‑288 (MQ=255)
                                                                                          tccacgaaCATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATaaa                                                                                                                                                                                          <  1:1609517/282‑1 (MQ=255)
                                                                                           ccacgaaCATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAg                                                                                                                                                                                         <  1:693266/283‑1 (MQ=255)
                                                                                           caacgaccATAGTCCCGCCAGCACACCGAGCAGACCGGTCATCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATTAATCGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAg                                                                                                                                                                                         <  1:581583/282‑1 (MQ=255)
                                                                                                 aCATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACGGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAAt                                                                                                                                                                                    <  1:1201751/288‑1 (MQ=255)
                                                                                                     cggacggCCAGCACACCAAGCAGACCGGTAAGCACGGCCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAata                                                                                                                                                                               <  2:1545708/283‑1 (MQ=255)
                                                                                                     aGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAata                                                                                                                                                                               <  1:1869668/289‑1 (MQ=255)
                                                                                                     aGTACCGACCGCCCACCGAGCAGACCGGACAGAACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAata                                                                                                                                                                               <  2:2251911/289‑1 (MQ=255)
                                                                                                           ggcAGCACACCGAGCGAACCGGTCAGCACGCACAGCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGcc                                                                                                                                                                         <  2:392264/287‑1 (MQ=255)
                                                                                                           gCCAGCCCACCGGCAAGACCGGTCAGCACGACCAGCAGCAGCGACAGCCCGGCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGcc                                                                                                                                                                         <  2:2133169/289‑1 (MQ=255)
                                                                                                           gCCAGCACACCTAGCCAACCGGTCAGCACGTCCATCAGCAGCGACAGCCCGTCAATGGCGGGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGcc                                                                                                                                                                         <  1:294523/289‑1 (MQ=255)
                                                                                                           gCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGcc                                                                                                                                                                         <  1:1935510/289‑1 (MQ=255)
                                                                                                             cagaaaacCGAGGAGACCGGTAAGAACGACCACCAGCATCGACGGCCCGTCAAGGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          <  2:1919802/280‑1 (MQ=255)
                                                                                                             cAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTgg                                                                                                                                                                                                                                             >  1:2199636/1‑219 (MQ=255)
                                                                                                               gCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGc                                                                                                                                                                                                                 >  1:1990874/1‑245 (MQ=255)
                                                                                                               gCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAggg                                                                                                                                                                     >  1:1321831/1‑289 (MQ=255)
                                                                                                                 acacCGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAggg                                                                                                                                                                     <  1:1766541/287‑1 (MQ=255)
                                                                                                                    ccGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGcc                                                                                                                                                                         >  2:1041813/1‑280 (MQ=255)
                                                                                                                     cGAGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATc                                                                                                                                                                                                                                                     >  1:765368/1‑203 (MQ=255)
                                                                                                                       aGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAgcgc                                                                                                                                                                                                                                                                                    <  1:1264099/170‑1 (MQ=255)
                                                                                                                       aGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAAt                                                                                                                                                                                    >  1:2136044/1‑266 (MQ=255)
                                                                                                                       aGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          <  1:2195140/276‑1 (MQ=255)
                                                                                                                       aGCAGACCGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          >  2:2195140/1‑276 (MQ=255)
                                                                                                                           gACCGGTAAGCACGACCATCAGCAGCGACAGCACGTCAATGGCGAGATGAATAGAGATACCAAACCGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCAGGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGc                                                                                                                                                         <  1:2615835/289‑1 (MQ=255)
                                                                                                                             ccggagaGCACGACCATATGCAGAGACAGCCGGTCAAGGGCGAGATGAATAGGGATACCAAAAGGCGGGATCCACAGCATGTCGAATTCAGCCTGCAACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGc                                                                                                                                                         <  2:1989613/281‑1 (MQ=255)
                                                                                                                             ccggaccgaaCGACCAACAGAAGGGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGc                                                                                                                                                         <  2:947342/278‑1 (MQ=255)
                                                                                                                             ccGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGc                                                                                                                                                         <  2:2058839/287‑1 (MQ=255)
                                                                                                                             ccGGTCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGc                                                                                                                                                         <  2:161280/287‑1 (MQ=255)
                                                                                                                             ccGGTCAGCACGACCATCAGACGCGACAGACCGTCAATGGCGAGATGAATAGAGACACCAAAACGCGGGATCAACGGCATGTCGAATTCTGACTGCCACTGCGGCATTGCGGCGGATTGCGGCAGAGAATACCCGCCCGGCAACTACAGTTGCAGCGACAGGGCCAGCGTCAATCCCATGGGAATAAGCGCGATCCAGCGTGGCAGCTTGACGCCAACGCGTTCGGTCTGCCAGCAGAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTATCATGGc                                                                                                                                                         <  2:2215701/287‑1 (MQ=255)
                                                                                                                                 tCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAAt                                                                                                                                                                                             <  2:173005/247‑1 (MQ=255)
                                                                                                                                 tCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCtt                                                                                                                                                   >  1:344373/1‑289 (MQ=255)
                                                                                                                                 tCAGCACGACCATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGAGCTCtt                                                                                                                                                   >  2:628814/1‑289 (MQ=255)
                                                                                                                                          ccATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          >  1:2589619/1‑257 (MQ=255)
                                                                                                                                          ccATCAGCAGCGACAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          <  2:2589619/257‑1 (MQ=255)
                                                                                                                                               agcagcgacAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGACGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTaaaa                                                                                                                                     >  1:2653753/9‑289 (MQ=255)
                                                                                                                                                  agcgacAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCACGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGt                                                                                                                                   <  2:893972/283‑1 (MQ=255)
                                                                                                                                                    cgacAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCCTGTCGAATGCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGCTCCAGCGTGGCACCTTGACGCCAAAGCGTTCGTTCTGCCAGTACAGGAAGCCGCCAATAAATGCATATAATAGTAGTCAAGGTAGTAACAATGCGATTTTACTTCCCTGTAACAGTtcc                                                                                                                                >  2:1789663/4‑289 (MQ=255)
                                                                                                                                                    cgacAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGc                                                                                                                                                                                                                                            <  1:60694/178‑1 (MQ=255)
                                                                                                                                                          cccGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAgg                                                                                                                          >  1:1033103/1‑289 (MQ=255)
                                                                                                                                                              tCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGaa                                                                                                                                                                                                      >  1:2361271/1‑209 (MQ=255)
                                                                                                                                                              tCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGaa                                                                                                                                                                                                      <  2:2361271/209‑1 (MQ=255)
                                                                                                                                                                       agaTGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAAt                                                                                                                                                                                    <  1:913921/218‑1 (MQ=255)
                                                                                                                                                                                   aTACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGc                                                                                                                                                                                                                                            <  2:1331153/150‑1 (MQ=255)
                                                                                                                                                                                   aTACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAggg                                                                                                                                                                     >  1:2282170/1‑221 (MQ=255)
                                                                                                                                                                                   aTACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAgg                                                                                                                          >  1:1242398/1‑264 (MQ=255)
                                                                                                                                                                                   aTACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACg                                                                                                 >  1:1008539/1‑289 (MQ=255)
                                                                                                                                                                                   aTACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACg                                                                                                 >  1:1405440/1‑289 (MQ=255)
                                                                                                                                                                                      ccAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          <  2:1942692/213‑1 (MQ=255)
                                                                                                                                                                                      ccAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGCTCGGTCTGCCAGCACAGGAAGCGGCCAATAAAGGCAATTAATCTTAGCCCGGGTACTAACATTGAGTCCTTTATTCCTTGTAAAAGTCCCGTCAGGATCGGATTTTCAACGATTTCTCACgcac                                                                                              >  2:23904/1‑286 (MQ=255)
                                                                                                                                                                                                         gCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACt                                                                            <  2:746217/288‑1 (MQ=255)
                                                                                                                                                                                                            tGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGc                                                                                                                                                                          <  1:655962/191‑1 (MQ=255)
                                                                                                                                                                                                            tGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTgggg                                                                        >  1:796385/1‑289 (MQ=255)
                                                                                                                                                                                                            tGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTgggg                                                                        <  2:796385/289‑1 (MQ=255)
                                                                                                                                                                                                             gTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTggggg                                                                       <  1:992946/289‑1 (MQ=255)
                                                                                                                                                                                                              tCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCTGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTggggg                                                                       <  2:697818/288‑1 (MQ=255)
                                                                                                                                                                                                               cGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTc                                                                                                                                                                                                                        >  2:2320854/1‑142 (MQ=255)
                                                                                                                                                                                                               cGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTc                                                                                                                                                                                                                        <  1:2320854/142‑1 (MQ=255)
                                                                                                                                                                                                               cGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTa                                                                     <  1:1058975/289‑1 (MQ=255)
                                                                                                                                                                                                                  aTTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAgt                                                                   <  1:848896/288‑1 (MQ=255)
                                                                                                                                                                                                                    tCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTc                                                                >  1:1663013/1‑289 (MQ=255)
                                                                                                                                                                                                                        aCTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAg                                                                                                                                                                       <  2:2436850/182‑1 (MQ=255)
                                                                                                                                                                                                                        aCTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAg                                                                                                                                                                       >  1:2436850/1‑182 (MQ=255)
                                                                                                                                                                                                                        aCTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAAGTCTCTTCGGACTGGGGGGAGTGTCggta                                                            >  2:1060335/1‑287 (MQ=255)
                                                                                                                                                                                                                        aCTGCCACTGCGGAATTCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCATTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAt                                                            >  2:285739/1‑289 (MQ=255)
                                                                                                                                                                                                                                       ttCCGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcgg                                             >  2:1168636/1‑289 (MQ=255)
                                                                                                                                                                                                                                         ccGGCGGATTGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcgg                                             <  1:725961/287‑1 (MQ=255)
                                                                                                                                                                                                                                                 ttGCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                   <  1:1690275/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   gcggcaggtaataACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAACACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                   <  2:357551/277‑1 (MQ=255)
                                                                                                                                                                                                                                                   gCGTCAGTGAATAACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                 <  1:1835574/289‑1 (MQ=255)
                                                                                                                                                                                                                                                       cagtgaataACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                              <  1:1519719/282‑1 (MQ=255)
                                                                                                                                                                                                                                                            aataACCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTGTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                        >  1:365903/2‑289 (MQ=255)
                                                                                                                                                                                                                                                                aCCGCCCTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTTATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATg                    <  1:23904/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   gCCCTGCAACCACGGTGGCAGCGACAGGGCCAGCGTCAATCCCAGGGTGATCAGCGCGATCCAGCGTGGGACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGccc                 <  2:1295231/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    cccTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                >  1:534928/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                      cTGCAACCACAGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGgta                                                                                                                                                                   >  2:583035/1‑140 (MQ=255)
                                                                                                                                                                                                                                                                              acaGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATc       >  1:2492782/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                               caGTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTggggg                                                                       <  2:51383/223‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 gTTGCAGCGACAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac   >  1:954292/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                        
ACATGTCGATGGCAAGGAACACGCCGATAACGCCGCCCAGGATCCACATCAGGTTGAGGTGGAAGAAGCCCTGATATTTTTCGATCTCTTTCCAGCTACATAGTACCGCCAGCACACCGAGCAGACCGGTCAGCACGACCATCAGCAGGCTCAGCCCGTCAATGGCGAGATGAATAGAGATACCAAAACGCGGGATCCACGGCATGTCGAATTCAGACTGCCACTGCGGAATTCCGGCGGATTGCGTCAGACTATAACCGCCCTGCAACCACAGTTGCAGGCTCAGCGCCAGCGTCAATCCCATGGTGATCAGCGCGATCCAGCGTGGCACCTTGACGCCAAAGCGTTCGGTCTGCCAGCACAGGAAGCCGCCAATAAAGGGAATTAATATTAGCCAGGGTAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACA  >  CP042583/1963921‑1964483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A