Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F9 I0 R1 102 135.6 2723430 97.5% 2655344 229.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,091,186 T→G 24.2% Y394S (TAC→TCC)  frvB ← putative PTS enzyme, IIB component/IIC component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,091,1860TG24.2% 128.8 / 4.4 73Y394S (TAC→TCC) frvBputative PTS enzyme, IIB component/IIC component
Reads supporting (aligned to +/- strand):  ref base T (21/28);  new base G (19/2);  total (42/31)
Fisher's exact test for biased strand distribution p-value = 1.90e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTCGCTTTGCGGCGTAACCACAATCCTTTCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGTTTTATTGA‑TGGGGCCGCCCATATC  >  NC_000913/4090949‑4091415
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                        
ttCGCTTTGGGGAGTAACCACAGTCCGTTCAGGACGAGAATGAATGAAAGGTTCGGCGCGAGGCCAATGCCCATGCCCAGAAAAACCGAACCCACCGGCGCCATCAGGGCGATCAGCGGGTCAAAGATCCCCAAACCA‑GGTCCCGGCCGTTTGATTCCG‑AAAGCGTTCACCAGGC‑CGCCTGTAAGGCCGCCTGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGt                                                                                                                                                                                                                                          <  2:158451/238‑1 (MQ=255)
        gcggcgTAACCACAATCCTTTCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGGAAAGGGGCCGCCAGAGCGAAA‑GGaaaa                                                                                                                                                                                                                                 >  1:1075013/1‑236 (MQ=255)
         cggcgAAACCACAATCCTTCCAGGACGATAAGGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGAAAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATCCCCAAACCA‑GGTGCCAGACGTTTGATCCCG‑AAGGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAg                                                                                                                                                                                                                                <  2:603093/238‑1 (MQ=255)
          ggcgTAACCCCAATCCTTTCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGCCGTTTGATTCCG‑AAGGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGc                                                                                                                                                                                                                               <  1:1034692/238‑1 (MQ=255)
             gTACCCCCAATCCTTCCAGGAGAATAATGATTGAAATGTTCCCCCCGCGGCCAACCGCCAGCCCCAAAAAAAACGAACCCCCCGCGGACACCAGCCCGATCGGCGGTTCAAAAATCCCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGACCACCAGCA‑CGCCGGAAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCcggt                                                                                                                                                                                                                           <  2:993940/239‑1 (MQ=255)
              tAACCACAATCCTTTCAGGACGAAAAGGAAGGAAATGTTAAGCGCGAGGCAAACCGCCAGCACCAGATAAAACGACCCCACCGGCGACATCAGCCCGATCAGCGGGTCAAAGATCCCCAAACCA‑GGGGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCcggt                                                                                                                                                                                                                           <  2:360662/238‑1 (MQ=255)
                     aaTCCTTCCAGGACGTAAATGAAGAAAATGTTCAGCGGGGGGCCAATCCCCAGCACCAAATAAAACGAACCCACCGGCGAAAACCGGCCGATCCGCGGGTAAAAATCACCCAAACCA‑GGTCCCGGCCGTTGGATTCCG‑AAAGCGATCCCCGGCA‑CGCCGTTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGc                                                                                                                                                                                                                   <  2:1127668/239‑1 (MQ=255)
                      aTCCTTTCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCCACGGAGCTGCCCGGGGGGAA‑GGAAAAACcgggtcgggttgg                                                                                                                                                                                                                  >  2:86710/1‑234 (MQ=255)
                          tttCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGCAATCATCGGCAACAGGACTGCCAGCGCGTAA‑GGAAAAGCCGATTCTGTTGCGGCtg                                                                                                                                                                                                              >  2:761677/1‑239 (MQ=255)
                           ttCGGGACGAAAAGGAATGAAATTTCCAGCGCGAGGCCAATCGCCAGCCCCAGAAAAAACGAACCCCCCGGCGACATCAGGCCGATCAGCGGGTCAAAGATCCCCAACCCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGt                                                                                                                                                                                                                                          <  2:153950/211‑1 (MQ=255)
                            tCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGCGCCGCCCGAGCGGAA‑GGAATAAACAGTTCGGGTgaggccgtg                                                                                                                                                                                                            >  2:507642/1‑231 (MQ=255)
                                  cGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCAcc                                                                                                                                                                                                       <  2:130620/238‑1 (MQ=255)
                                   gATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAAACGAGCTGCCAGGGGGCAA‑GGAAGAGCCGGGTCGGCTGCGAGTGGGGCACCg                                                                                                                                                                                                      >  1:1043625/1‑238 (MQ=255)
                                   gATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATACTCGGCAACGGAGGTGCCCGAGCGGAA‑GGAAAAGCCGGTTCGGTTGCGGCCTTGGCCCCg                                                                                                                                                                                                      >  1:1062046/1‑238 (MQ=255)
                                     tAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGGAA‑GGAATAGc                                                                                                                                                                                                                               >  1:153950/1‑211 (MQ=255)
                                     tAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGGCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATAAACCGCAACGGAGACGCCGGAGCGTAA‑GGAATAGCCGGTTCGGGTGCGGCAGTgggcccagac                                                                                                                                                                                                   >  2:406278/1‑231 (MQ=255)
                                       atgaatgaAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACcac                                                                                                                                                                                                 <  1:1058207/239‑1 (MQ=255)
                                           atgaaATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATg                                                                                                                                                                                             <  1:897649/239‑1 (MQ=255)
                                              aaaTGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTAAAAGATCCCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATgg                                                                                                                                                                                            <  1:1155817/237‑1 (MQ=255)
                                               aaTGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAAAGGAGCTGCCCGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCa                                                                                                                                                                                          >  1:431799/1‑238 (MQ=255)
                                               aaTGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGAAATCATCGGCAACGGAGCTGCCCGAGCGGAA‑GGAAAAGCCGGGTTGGGTGGGACTGTGGGGCCCACcacacatgga                                                                                                                                                                                          >  1:512837/1‑232 (MQ=255)
                                               aaTGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCACGCCAGCGTATTGGCGGCACGCATCCGCGACCGAGCTGACCGAGCGGAAGGGAAAACCCGGTT‑GGGTGCGACTGGGGCGCCGGCCACACGGGCa                                                                                                                                                                                          >  2:269630/1‑238 (MQ=255)
                                                  gTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGCAATCATCGGCAAAGGGGCCGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAAAGGCacta                                                                                                                                                                                       >  1:856099/1‑238 (MQ=255)
                                                    tCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAAACATCGGCAAAGGAGCTGCCCGGGCGTAG‑GGAAAAGCCGGGTGGGTTGGGGCCGTGGCACCGGACAAAATgggccaaaag                                                                                                                                                                                    >  1:1097077/1‑231 (MQ=255)
                                                     cAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCCGCAACGGAGCAGCCAGAGCGGAA‑GGAATAGCCGGTTCGGTTTCGACTGGGGCCCCGAACACAATGGGACCACTg                                                                                                                                                                                    >  1:1323707/1‑238 (MQ=255)
                                                      aGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAAACATCGGCAACGGAGCTGCCCGCGCGGAA‑GGAATAGCCGGTTCGGGTGGGGCTGTGGCACCGACCACAAAGGCACTACCgg                                                                                                                                                                                   >  2:278101/1‑238 (MQ=255)
                                                        cgcgAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCCGCCACGGAGCGGCCAGAGCGTAA‑GGAAGAACCGGGTCGGGTGGGACCGTGGGACCGGCCCCCAAGGCCCTCCTGGCa                                                                                                                                                                                 >  2:754034/1‑238 (MQ=255)
                                                        cgcgAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGGAATCATCGGCCACGGAGCTGCCAGAGCGGAA‑GGAAAAACCGGGTCGGGTGCGGCCGGGGGCCCGCACACAAAGGCACCACTGGCa                                                                                                                                                                                 >  2:1155817/1‑238 (MQ=255)
                                                         gcaagccaaaTCGCCAGCCCCAGAAAAAACGCACCCCCCGGCGACAACAGGCCGATCAGCGGGTCAAAGATCCCCAAACCA‑GGTGCCAGCCGTTTGATTCCG‑AAAGCGACCACCAGCC‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAg                                                                                                                                                                                <  2:1300141/230‑1 (MQ=255)
                                                             ggCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAAAGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGGGACTGTGGCACCGACCACACAGGGACTACTgggcgccact                                                                                                                                                                           >  1:1168749/1‑231 (MQ=255)
                                                                    cGCCAGCACCAGATAAAACGAACCCGCCGGCGACATCAGGCCGACCAGCGGGTCAAAGACACCCAAACCA‑GGTGCCAGACTTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCt                                                                                                                                                                    <  2:1054994/239‑1 (MQ=255)
                                                                      ccacccccAGATAAAACGACCCCACCGGGGACATCGGGCCGACCGGGGGGTCAAAGATCCCCAACCCA‑GTTGCCAGACGTTTGATCCCA‑AAAGCGACCCCCACCA‑CGCCGTTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGt                                                                                                                                                                  <  2:512837/233‑1 (MQ=255)
                                                                       cAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGGTCGGTTGCGACTGTGGCACCGACCACAAAGGCACCACTGGCAGCCTCTTTTTCCTGTc                                                                                                                                                                 >  1:280667/1‑239 (MQ=255)
                                                                        aGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCCGAGCGGAA‑GGAATAGCCGGTTTGGGTGCGACTGGGGCACCGACCCCAATGGGACTACACGCAGCCTCTTTTTcccttcg                                                                                                                                                                >  2:175343/1‑234 (MQ=255)
                                                                         gCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATTCTCCGCCACGGAGCTGCCAGAGCGGAA‑AGGATAACCGGGTCGGTTGCGACTGGGGCAACGGCCACAAAGGCACTACTGGCAACCTCTTTTTCCTGTCgg                                                                                                                                                               >  2:594096/1‑239 (MQ=255)
                                                                           acaaGAAAAAACAAACCCACCGGCGACATCAGGCCAATCGGCGGGTAAAAGAT‑CCCAAACCAGGGTGCCAGACGTTTGATCCCG‑AAAGCGATCCCCAGCA‑CGCGGGTAAGGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCg                                                                                                                                                                <  2:569369/233‑1 (MQ=255)
                                                                            ccAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTa                                                                                                                                                            <  1:603688/239‑1 (MQ=255)
                                                                               gATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCCACGGAGCTGCCAGAGCGGAA‑GGAAAAACCGGTTCGGTTGCGACTGTGGCACCGCCCACCATGGCACTAATGGCAGCCTCCTTTTTCTGTCGGGTAAAc                                                                                                                                                         >  1:670224/1‑239 (MQ=255)
                                                                               caaaaaaCGAACCCCCCGGAGACAGCAGGCCGCACAGGGGGTAAAAGATCCCCAACCCG‑GGTGCCAGCCGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAAc                                                                                                                                                         <  2:1062046/236‑1 (MQ=255)
                                                                                 tAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAAc                                                                                                                                                         <  1:618769/237‑1 (MQ=255)
                                                                                        aaCCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGGAATCATCGGCCACGGGGCTGCCAGGGCGGAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCGCCGACCACCAAGGCACCACTCGCCGCCCCCTTTTTCTGTCTGGTAAAAAGTTTCGgc                                                                                                                                                >  2:314843/1‑239 (MQ=255)
                                                                                         aCCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGgc                                                                                                                                                >  1:368111/1‑238 (MQ=255)
                                                                                              ccGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCCAAGGAGCTGCCCGAGCGTAA‑GGAAAAACCGGGTCGGTTGCGACTGTGGGACCGACCACAATGGGAACACTGGCGGCCTCTTTTTTCTGTCGGGGAAACAGATTTGGCGCAATg                                                                                                                                          >  2:529782/1‑239 (MQ=255)
                                                                                                ggCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGaa                                                                                                                                        <  1:86710/239‑1 (MQ=255)
                                                                                                   gACATCAGGCCGACCAGCGGGCCAAAGATACCCAACCCG‑GGTGCCAGAGGTTTGATCCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑g                                                                                                                                     <  2:724574/238‑1 (MQ=255)
                                                                                                     cATCAGGCCGATCAGCGGGTAAAAGATCCCCAACCCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGAc                                                                                                                                                                                                    <  2:397133/174‑1 (MQ=255)
                                                                                                              caccggggggTAAAAGAT‑CCCAAAGCC‑GGTCTCAGGTCTTTTATTCCGAAAAGCG‑CCCCCAGCCCCGCCGTTAATCCCGCCCGCCGGCGTATTGGCGGTAATCATGGGCAACGGAGCTCCCAGAGCGTAA‑GAAATAGCCGGTTCGTTTGCGACTGTGGCCCCGACCACAATGGCACTCCTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTGGGGCGCAATGAAC‑GTCGCAAGACccg                                                                                                                         <  2:1291617/232‑1 (MQ=255)
                                                                                                               aTCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCCAACGAGCTGCCAGAGCGGAA‑GGAATAGCCGGGTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGGCCCTTTTTTCCGTCGGGGAAACAGGTTTGGCGCAATGAAC‑ATCCCAAGAaccc                                                                                                                         >  2:742344/1‑237 (MQ=255)
                                                                                                               aTCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCCGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGGTCGGTTGCGACTGTGGCACCGACCACAATGGCa                                                                                                                                                                                          >  1:397133/1‑174 (MQ=255)
                                                                                                                    cGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTTGGCGCAATGAAC‑GTCGCAAAACCCGCcgcg                                                                                                                    >  1:938951/1‑238 (MQ=255)
                                                                                                                      ggTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATTCTCCGCAACGGAGCCGCCCAAGCGTAA‑GGGAAAGACGGTTCCGCTGCGACCGCGGCACCGACCCCAAATGCACCACCGGCAGCCTCTTTCTTCTGTCCGGTAAAACGATCGGGCGCCATGACC‑GTCGCACTACCcgccgcccac                                                                                                                 >  2:1060536/1‑235 (MQ=255)
                                                                                                                                 cccAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGGAATCATCGGCCACGGAGCTGCCCGAGCGGAA‑GGAAAAGCCGGTTCGGGTGCGACTGTGGCACCGACCACAATGGCACTACCTGCAGCCCCTTTTTTCTGTTCGGTGAACAGGTTTGGCGCAAAGAAC‑GGCGCCAGACCCCCCCCGTCgggggggctga                                                                                                       >  2:1039856/1‑233 (MQ=255)
                                                                                                                                      aCCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGGAAACAGGTTTGGCGCCATGAAC‑GTCGCCAGACCCGCCGCGACGGGCGGCATCAGcgcg                                                                                                  >  1:23870/1‑238 (MQ=255)
                                                                                                                                      aCCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGGAA‑GGAATAGGCGGTTCGGGTGCGACTGTGGGACCGACCACAATGGCACTACTGGCAGCCTCCTTTTTCTGTCGGGGAAACAAGTTTGGCGCAAATAAC‑CGCGCCAAGCCCGGCGCGACGGGCGGCagacggcgg                                                                                                  >  2:65039/1‑230 (MQ=255)
                                                                                                                                                        tGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCCGCAACGGAGCTGCCAGAGCGTAA‑GGAAAAACCGGGTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCCCTTTTTTCTGTCGGGGAAACAGTTTGGGCGCAACGAAC‑GGCGCCAAACCCGCCCCGGCGGGCGGCCTCAGGCCGACAAAGcccgcgcagggg                                                                                >  2:1145576/1‑229 (MQ=255)
                                                                                                                                                               g‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCCGCAACGGAGCTGCCAGAGCGGAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGGAAACAGTTTGGGCGCAATGAAC‑GTCGCCAGACCCCCCCCGACGGGCGGCCTCCGCGCGACCACGCCGCCCATGGCGTACCac                                                                          >  2:68690/1‑237 (MQ=255)
                                                                                                                                                                 aagggcacccccAGCC‑CGGCGGAAGGGCCGCCCGCCAGCGTATTGGGGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTc                                                                        <  1:68690/229‑1 (MQ=255)
                                                                                                                                                                 aaaGCGACCCCCGGCC‑CGCGGGTAGGCCCGCCCGCCAGCGTATGGGCGGTAATCACCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCGGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTGGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTc                                                                        <  1:622097/239‑1 (MQ=255)
                                                                                                                                                                      gATCCCGAGCA‑CGCGGGTAATGCCCCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCCCCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATaaa                                                                   <  1:742344/239‑1 (MQ=255)
                                                                                                                                                                               cA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCCGCCAGAGCGGAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGGTTGGGCGCAATGAAA‑GGCGCAAAACCCGCCCCGGCGGGCGGCAACACGGCGCACACCCCGCCCACGGCGGACCAGCCATAAAAGAGttttt                                                          >  2:1257764/1‑239 (MQ=255)
                                                                                                                                                                                 acgcggtaaaggccgccCGCCAGCGTTTTGGGGGTAAGCAGCGGCAACGGGGCTGCCAGGGGTTAA‑GAAGTAGCGGGTGCGGTTGCGAGTGGGGCACCGCCCAAAATGGCCATACTGGCAGCCTCTTTTCCCTGTGGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGCCCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTc                                                         <  2:1142804/228‑1 (MQ=255)
                                                                                                                                                                                     cGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTTCTGTCGGGGAAAAAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCcagc                                                     >  1:342983/1‑239 (MQ=255)
                                                                                                                                                                                               gcccgccAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGGAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGGAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGGACCAGTCATAAATGTGTTTTTTCAGCAGTGAGAAGc                                           >  1:349611/1‑239 (MQ=255)
                                                                                                                                                                                                cccgccAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCCCAATGGCACTACTGGCAGCCTCTTTTTCCTTTCGGGGAAACCGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCCTAAATGTGTTTTTCCAGCAGTGCGAAGCa                                          >  1:354151/1‑239 (MQ=255)
                                                                                                                                                                                                 ccgcgggggTATGGGGGGAAACCGTCGGCAACGGGCCTGCCAGGGCGTAA‑GGAATGGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCCCTACTGGCAGCCTTTTTTTCCTGTCGGGAAAACAGTTTGGGCGAAATGAAC‑GCCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAGGCag                                         <  2:670224/231‑1 (MQ=255)
                                                                                                                                                                                                          ttttGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGAAA‑GAAATAGCCGGTTCGTTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCa                                 <  1:1232954/236‑1 (MQ=255)
                                                                                                                                                                                                           agtGGCGGAAATCACCGGCAAGGGGGCTGCCAGGGCGGAA‑GAAAAGGCGGGTTCGGTGGCGACTGTGCCCCCACCCAAAAGGGCCCTACGGGCGCCTTCTTTTCCCTGTGGGAAAAACAGTTGGGCCGAAATGAAC‑GTCGCAAGCCCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAgg                               <  2:288620/237‑1 (MQ=255)
                                                                                                                                                                                                           aTTGGCGGTAATCATCGGCAACGGGGCTGCCAGAGCGTAA‑GGAATGGCGGGTTCGGTTGCGACTGTGGCCCCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAgg                               <  1:754034/239‑1 (MQ=255)
                                                                                                                                                                                                           aTTGGCGGTAATCACCGCCAACGGAGCGGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTGGCGACGGTGGCACCGACCACAATGGCACTACTGGCGCCCTCTTTTTCCTGTCGGATAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAgg                               <  1:314843/239‑1 (MQ=255)
                                                                                                                                                                                                                   gaaTCACCGGCAACGGAGCGGCAAGAGCGGAG‑AGAAAAGCCGGTTCGGTGGCGACTGTGGCACCGACCACAAGGCCACTTGTGGCAGCCTCTTTTCCCGGTCGGGTAAACAGTTTGGGCG‑AAAGAACGGCCGCAAGCCCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGtttt                        <  2:703682/237‑1 (MQ=255)
                                                                                                                                                                                                                       cctcGGCACGGGAGCTGCAAGAGGGTAA‑GGAAGAGCGGGTGCGGTGGCGACGGCGGCCCCGACCACAAGGGCACTACTGGCAGCCTCTTTTTCCTGCCGGTAAAACAGTTTGGGCGCAAGGACC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGTTTTATTGa                   <  2:1304864/237‑1 (MQ=255)
                                                                                                                                                                                                                         tcGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTTGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATAGCGTCCCCGTCATCAATGTGTTTTTCCAGCAGTGTGAAGCCGAGGCACCAGGCGGATTTCTTGC‑Tg                >  2:603339/1‑239 (MQ=255)
                                                                                                                                                                                                                         tcGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGTTTTATTGA‑Tg                >  1:1194718/1‑239 (MQ=255)
                                                                                                                                                                                                                                   aGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGCTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGTTTTCTTGATTGGGgccgcc        >  2:528106/1‑238 (MQ=255)
                                                                                                                                                                                                                                       gCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGCCGGGCGGCATCAGCGCGACAACGCCGAAGATGGCGCACCAGTCATAAATGTGTTTTTCAAGCAGTGAGAAGCAGAAGAACCAGGCGGGTTTATTGT‑TGGGGCCCGCCATATc  >  2:1043736/1‑239 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                        
TTCGCTTTGCGGCGTAACCACAATCCTTTCAGGACGATAATGAATGAAATGTTCAGCGCGAGGCCAATCGCCAGCACCAGATAAAACGAACCCACCGGCGACATCAGGCCGATCAGCGGGTCAAAGATACCCAAACCA‑GGTGCCAGACGTTTGATTCCG‑AAAGCGATCACCAGCA‑CGCCGGTAATGCCGCCCGCCAGCGTATTGGCGGTAATCATCGGCAACGGAGCTGCCAGAGCGTAA‑GGAATAGCCGGTTCGGTTGCGACTGTGGCACCGACCACAATGGCACTACTGGCAGCCTCTTTTTCCTGTCGGGTAAACAGTTTGGGCGCAATGAAC‑GTCGCAAGACCCGCCGCGACGGGCGGCATCAGCGCGACAACGCCGACGATGGCGTACCAGTCATAAATGTGTTTTTCCAGCAGTGAGAAGCAGAAGAACCAGGCGGTTTTATTGA‑TGGGGCCGCCCATATC  >  NC_000913/4090949‑4091415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A