Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F17 I0 R1
|
87 |
120.7 |
2441348 |
95.3% |
2326604 |
231.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,003,509 |
T→G |
22.3% |
T224P (ACC→CCC) |
rarD ← |
putative chloramphenical resistance permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,003,509 | 0 | T | G | 22.3%
| 101.1
/ 2.5
| 59 | T224P (ACC→CCC) | rarD | putative chloramphenical resistance permease |
| Reads supporting (aligned to +/- strand): ref base T (16/26); new base G (14/2); total (31/28) |
| Fisher's exact test for biased strand distribution p-value = 9.76e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCAA > NC_000913/4003276‑4003739
|
tatatTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTg > 1:512100/1‑238 (MQ=255)
tatttGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGGACGGGAAGGAGAATACGggcggc > 2:722052/1‑239 (MQ=255)
tCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGAAGGTAGTGACAATACCGGCGGCGAACAGCAGTa > 1:22920/1‑239 (MQ=255)
gagTAGAAATCGCAGCCATCACAAAAAGGGCCACCGCGACCCAAATAAAGGCGAAAGTCCCCATCTGATCTGCACCCGGTTTTGCACCATAAAACGTCACAGCCAGCAGGAACAGCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCGGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATGCCGGCGGCGATCAGCAGTAAATTCAg < 2:221508/236‑1 (MQ=255)
cGTATACATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATACAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAACAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGGAAAAAACAACAGCGGTACGGGAGAGACAAAAGCCGCGGCCGGCAGGAGTAAAATCAACg > 2:902853/1‑239 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGCGACGCAAGCGCGGGGCAGCGGCGGCAAAACACAACAGAGGTCAGGTGGTGACAATACCCGCGGCGGACCGCAGAAAAtcacggc > 2:358979/1‑233 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTGGGGACAATACCGGCGGCGATCAGCAGGAAATTCAGCg > 1:826424/1‑239 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGACGGTAGTGACAATACCGGCGGCGAGCAGCAGTAAATTCAGCg > 1:720793/1‑239 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACAAAAAAACGGGTCGGTAGGGCACATACCGGGGGCGGTCCGCCCGAAAATCAGca > 2:155679/1‑238 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAACCAACAGCGCAACGAGAGAGCCGATACCCGCAGACATCAGAAGAAAAATCAGcc > 2:302874/1‑238 (MQ=255)
cGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAAACAACAGCGGGACGGTAGTGACAATACCGGGGGCGATCAGCAGGAAATTCAGCg > 1:358506/1‑239 (MQ=255)
gTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTGAAAAACAACAGCGGGACGGTAGTGACAATAACCGCGGGGGTCAGGAGGaaaattcacg > 1:541337/1‑231 (MQ=255)
gTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAACGGGACGGGAGGGACAAAACCGGCGGCGAACAGCAGGAAAATCAGcc > 1:230837/1‑237 (MQ=255)
gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCCAGCGCGTGGCAGCGGCGGTAAAAAACCAAAGCGGGACGGTAGAGGCCATACCCGCGGCGGTGAGGCGGAAAATCAGCGAcctaagggt > 2:164876/1‑231 (MQ=255)
gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGtt < 2:512100/239‑1 (MQ=255)
gCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGACCGGGAGTGACAAAACCGGCGGGGGCCAGCCGAAAATTCAGGCACACCggggt > 1:450422/1‑237 (MQ=255)
tccatcACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCGCCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTg < 1:1053157/239‑1 (MQ=255)
gcCACCCAAATAAAGGCGAAAGTCACCAGCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAg < 1:718824/237‑1 (MQ=255)
cacaaaGGCGAAACGCACCATCTGAGCGGCACCCGGTTTTTCACCATAAAACGTAACAGCCAGCAGGAACATCAGGGTCGGGCCAATGTACTGGAAAAAGCCTAACGTGGAGAGACGCAAGCGCGTGGCCGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACAGCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCaa < 2:620781/236‑1 (MQ=255)
ggCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGTACGGGAGTGACCCTTACGGCGGGGGACAACAGAAAATTCAGCGACATCGGGAGTTGCCCCACTAGGGTGGTCGAGATGTCGGCaacaaaca > 2:106475/1‑233 (MQ=255)
aaaGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGGAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCTGCCATaacaaac‑ac > 2:948045/1‑238 (MQ=255)
ccATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACCAAACAATGGTACGGGCAGGACAAAAACCGCGGGGGTCAGTAACAAATTCAACGCAACGGGGGTTTGCCCCCACTTGCTGGGTGAGCTGTCGGGAATCACTAAC‑Agcgaacg > 2:240202/1‑232 (MQ=255)
aTCGACGCCCGGTTTTTCACCATAAAGCGGCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCGGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCa < 2:797611/239‑1 (MQ=255)
cGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAATCGGGAAGGGAGTGACAATACCCTCGGCGATCAGCCGGAAATTCCGCTGCAACGGGGTTTGCCCCATATTGGTGGTTCAGCTGTTGGCAATCACAAAA‑ATGGAAATTGCAGCCACg > 2:134455/1‑239 (MQ=255)
cccGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGGAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAACAAAA‑AAGGAAATTGCCGCCACGGgca > 1:976304/1‑238 (MQ=255)
ccGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGGAAATTCAGAGACATCCGGTTTTGCCCCATATGGCTGGTTGAACTGTCGGCAATAGCAAAC‑AGGTAAAATGCCGCCACGGgcagc > 1:1098458/1‑239 (MQ=255)
ttCACCAAAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTCACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCcaca < 1:554688/239‑1 (MQ=255)
tAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGCAGGGACAATATCGGCGGCGGTTAGCAGTAAATTCAGCGACATCGGGCTTTGCCCCaca > 1:875733/1‑169 (MQ=255)
aaagcgagaAGGAACAACAGCGTGGGGCAAAGGAACTGGAAAAAAACTAACGTGGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAATACAACAGCGGTACGGGAGTGACAATTGCGTGGTGGGTCAGCAGTAAATTCAGCGACATCGGGTTTTGCCGCATAAGGCTGGTTGAGCTGTCGGGAATAGCAAAC‑AGTTAAATTTTCGGCACGGGCAGAAGCCACATGGTTTCGATTAAc < 2:338581/235‑1 (MQ=255)
ccagcAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGAAAAACCAAAAAACCGTACGGGAGAGGCAAATACGGGGGCGGTCAGCAGCAAATTCCGGGACATCGGGGTTTTCCCCATATTGGTGGTTGGGCTGTCCGCAATAGCAAAC‑AGGGAAATTGCCGCCACCGGCAGTCGCCACCGTGTTTCTGTTAACAAG‑ccc > 2:1103836/1‑238 (MQ=255)
aaCATCAGCGTCGGGCCAAGGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTg < 1:164876/236‑1 (MQ=255)
gCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACCACAGCGGGACGGGAGGGACAATAACGGCGGCGAGCAGCAGGAAATTCAGCGGCATCGGGGTTTGGCCCACATGGCCGGGTGAGATGTCCGCCACAGCAAAC‑AGGGAAATTGCCGCCCCGGGCAGCAGGCACATGGGTTCGCATAAAATG‑CCCGGTTGCCCCTCACCg > 2:35987/1‑239 (MQ=255)
ggcGGTCCAAGGGACTGAAAAAAGCCTAACTGTGAGAGACGCAATCGCGTGGCAGAGGCTGTAAAATACAAGAGAGGGACGTTAGTGACAAGACCGGCGGCGAGCAGCAGAAAATGCAGCGACATCTGGTGTTGCCCCATATGGCGGGTTGAGCGGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGTCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACgt < 2:760540/236‑2 (MQ=255)
cGGGCAAATGTACTGGAAAAAGCCTAACGTTGGGAGGCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCa < 2:976304/238‑1 (MQ=255)
cAATGTACTGGAAAAAGCCTAACGTAGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAAtcttc < 1:948045/239‑1 (MQ=255)
aTGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATcttctt < 1:280155/239‑1 (MQ=255)
tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGcggtacggt > 1:146748/1‑68 (MQ=255)
tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGcggtacggt < 2:146748/68‑1 (MQ=255)
tGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAAAACAACAGCGGGACGGGAGAGACAATACCGGCGGCGGGAAGCAGTAAATTCCGCGGCGGCGGGGTTTGCCCCATATGGCGGGTTGGGCGTTCCGCAATAGCAAAA‑CAGTAAATTGCCTCCACGGGGAGACGCACCATGGTTTCGGATAACAAC‑ACGGTTTGGGGGTGAAAGGCAATCTTCTTTCGtc > 2:1174769/1‑237 (MQ=255)
tGGAAAAAGACTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAc < 2:1085995/239‑1 (MQ=255)
aaaaGCCTAACGGTGGGAGGCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATCCCGGCGGGGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCGTATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGa < 2:22920/239‑1 (MQ=255)
aGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGGACGGGAGTGACAATACCGGCGGCGGTCAGCAGTAAATTCAGCGACATCGGGGTTTGCCCCATATGGCTGGGTGAGCTTTCGGCAATAGCAAAA‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGGTTCGCTTAACAAG‑CCGGTTTGGGCCTCAACGGCCATCTTCTTGGCTAC‑CCGACCg > 2:977540/1‑239 (MQ=255)
aGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAAAAGCGGTACGGTAGTGACAATACCGGCGGCGGTCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCCCGGGGAGCAGCCCAATGGTTTCGATTAACATGCCCGGTTTG‑GCCTCAACGGCAATCCTCTTTTGTAC‑Caaaacg > 2:1008510/1‑234 (MQ=255)
tGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAATCACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCaa < 1:209657/239‑1 (MQ=255)
tGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCa < 1:106475/238‑1 (MQ=255)
agagaCGCAAGCGCGTGGCAGCGGCGGTAAAACACCACAGCGGGACGGTAGTGACAATACCGGCGGCGATCAGCCGTAAATTCAGCGACATCGGGTTTTTCCCCATATGGCTGGGTGAACTGTCGGCAATAACAAACAAGGGAAATT‑TCGCCCCCGGCCGCAGCCACATGGGTTCGCTTAAACTGCCCGGTTTGGGC‑TCAACGGGAAACTTCTTTTGTACACAAACCGAAGAGGGCaaa > 2:656526/1‑239 (MQ=255)
agagaCGCAAGCGCGTGGCAGCGGCGGTAAAAACCAACAGCGGTAAGGGAGTGAAAATAACGGCGGCGATCAGAAATAAAATTAGGGACATAGGGTTTTTCCCCATATGGCTGGTTGTGATGTCGGAGAAAGCAAAA‑AGGTAAATTTTCCCCACGGGAAGAATCCCCAACGTTTCCAATTACAAG‑CCGGGTTTCCCGTTAAAGAGAACTTTCTTTCGTAC‑AAAGCCGTAGAAAGCaaa > 2:1073912/1‑238 (MQ=255)
gagaCGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCaaaa < 1:155679/238‑1 (MQ=255)
cGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTaa < 1:722052/238‑1 (MQ=255)
gCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAAt < 1:161928/239‑1 (MQ=255)
aaGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACGTCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGc < 1:1174769/239‑1 (MQ=255)
cAGCGGCGGTAAAATACAACAGCGGTACGGGAGTGACAATACCGGCGGCGATCAGCAGTAAATTAAGCGACATCGGGTTTTGCCCCAGATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 2:541337/238‑1 (MQ=255)
cAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 1:902853/238‑1 (MQ=255)
cAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAg < 1:358979/238‑1 (MQ=255)
gcggggGTAAAACACAACGGCGGTACGGTAGTGACAATACCGACGGGGAGCAGCAGGAAATTCAGCGACATCGGGTTTTGCCGCATATGGATGGTTGAGCTGGCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTGCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:12275/238‑1 (MQ=255)
ggcggTAAAACACAACAGCGGTACGGTAGGGACAATCCCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:937122/236‑1 (MQ=255)
ggcggTAAAACACAACAGCGGTACGGTAGGGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAgcg < 2:230837/236‑1 (MQ=255)
caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGTAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGAt < 2:204395/141‑1 (MQ=255)
caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGAt > 1:204395/1‑141 (MQ=255)
caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGaa > 2:1070579/1‑238 (MQ=255)
caGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATA‑CCGGTTTGCGCCTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGCAGGCAAAACTACATGCCAGTCCCAGCGCAATAATAGGTAGCGaa > 1:559719/1‑238 (MQ=255)
cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa > 2:290563/1‑239 (MQ=255)
cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa > 1:1173179/1‑239 (MQ=255)
cggtacggtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGCTTTGCCCCATATGGCTGGTTGAACTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAAGTAGCGAACCaa > 1:674691/1‑239 (MQ=255)
gttactgtaGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCaa < 1:1020762/236‑1 (MQ=255)
gggacggtcGTGCCAGTCCCGGTGGCGATCAGCAGCAAACTCAGCGACATCGGGTTTTGCACATTATGGCTGGGTGAGCTGTCGGCAATAGCAAAC‑AGGTAAACTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGAGCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTCGCGAAc < 2:450422/232‑1 (MQ=255)
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TATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAGCAGGAACATCAGCGTCGGGCCAATGTACTGGAAAAAGCCTAACGTTGAGAGACGCAAGCGCGTGGCAGCGGCGGTAAAACACAACAGCGGTACGGTAGTGACAATACCGGCGGCGATCAGCAGTAAATTCAGCGACATCGGGTTTTGCCCCATATGGCTGGTTGAGCTGTCGGCAATAGCAAAC‑AGGTAAATTGCCGCCACGGGCAGCAGCCACATGGTTTCGATTAACATG‑CCGGTTTGCGCTTCAACGGCAATCTTCTTGCGTAC‑CAGACCGTAGAAGGCAAAACTAAATGCCAGTCCCAGCGCGATAATAGGTAGCGAACCAA > NC_000913/4003276‑4003739
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
