Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F9 I0 R1
|
75 |
124.0 |
2465218 |
96.8% |
2386331 |
230.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
628,868 |
T→G |
25.4% |
G106G (GGT→GGG) |
entA → |
2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 628,868 | 0 | T | G | 25.4%
| 110.0
/ 2.9
| 53 | G106G (GGT→GGG) | entA | 2,3‑dihydro‑2,3‑dihydroxybenzoate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (9/27); new base G (14/2); total (23/30) |
| Fisher's exact test for biased strand distribution p-value = 4.00e-05 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAGTTACAGGTTTTGATCAAGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAACGCACGCTG > NC_000913/628642‑629105
|
aaGTTACAGGTTTTGATCAAGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATTGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGTGGGTAACGTCGGCGGGGCGGTTTAccct > 1:8431/1‑237 (MQ=255)
aCAGGTTTTGATCAAGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGGCCGATCAGCTCAGTAAAGAGGGCTGGCAGCAGACTTTTGCGGGTAACGTCGGCGGGGCGGTTTAACTGT‑Tcc > 2:1151462/1‑238 (MQ=255)
ttGATCAAGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGTGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAAcc > 1:33815/1‑239 (MQ=255)
aaGCGTTCCCTCAGGAGCAATATCCCTTTGCGACCCGAGTGGTGGGTGTTGCCGACGCTGAGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGGAACGGAGGGACTGGGCGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAAc < 2:841032/239‑1 (MQ=255)
aGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGGGCGACCGATCAGCTCAGTAAAGAGGGCTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGGGCGCGTAACCTGT‑TCCAG‑CAAACCATTAAc > 2:212128/1‑238 (MQ=255)
aGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCCGCTCAGTAAAGAGGACTGGCAGCAGACTTTTTCGGGTAACGTCTGCGGGGCGTTTTACCTCT‑TCCCG‑CAAACAATGaaac > 2:803061/1‑237 (MQ=255)
aGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGGGGGGTTAACCTGG‑TCCAG‑CAAAACATGGAcc > 2:538480/1‑239 (MQ=255)
gCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTTCGGTTAACGTCGGCGGTGCGTTTAAACTGT‑TCCAG‑CCAAACATGAACCa > 1:989680/1‑239 (MQ=255)
gCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCa > 1:556964/1‑239 (MQ=255)
aGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTTCGGTTAACGTCGGCGGGGGGTTTAACCCGT‑TCCCG‑CAAAACATGAACCA‑GTTTTGCCg > 1:277169/1‑238 (MQ=255)
tatCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCACTGGGGCGACCGATCAGCTTCGTAAAGAGGACTGGCAGCCGACTTTTGCGGTTACAGGCGGGGGGGGGGTTTAGCTGTATCCAG‑CAAACAACACAACA‑TTTTCG‑CGTCCgcgggg > 2:833563/1‑239 (MQ=255)
tCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAgcggggcg < 1:1125617/239‑1 (MQ=255)
tCCCTGTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAgcggggcg < 2:255465/239‑1 (MQ=255)
ttGCGACCGAGGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAACCGGAGCGGCGGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGGGTGATCGATCCGCTCAGTAAAGAGGACTGGCAGCGGACCTTTGCGGTTAACGTCGCCCGGGCGGTTAACCCGT‑TCCCGCCAACCCTTGAACC‑‑GGTTCGCCGCCCCCCgggccgggcg > 2:546850/1‑239 (MQ=255)
tGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGGGGGTTTAAACTGT‑TTCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGgggcggggcgg > 1:779810/1‑238 (MQ=255)
aCCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGGATTTTACGCATGGGCGCGGCCCCTCAGCTCAGTCAAGAGGACCGGCCGCCGGCTTTTGCGGTTTACGTCGGCGGGGCGTTTTACCCTT‑TCCCG‑CCAACCACGAACCAGGTTTCCCCG‑CCGccgggcgggggcggtgt > 2:64806/1‑232 (MQ=255)
ccGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGt < 1:607877/238‑1 (MQ=255)
aaGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAGCGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGGAAAAAGGACTGGCAGCAGACTTTTGCGGTTAACGTCCGCGGGGGGGTTTACCCGT‑TCCAG‑CAAACCATGAACCA‑GTTTTGCCCTCCGcgggggggggggggtgtcgcc > 2:1110695/1‑228 (MQ=255)
tGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGCATTTTACGCCTGGGCGCGACCGATCAGCCCAGTAAAGAGGACTGGCAGCCCACTTTTTCGGTTAACGTCCGCGGTGCGTTTTACCTCT‑TCCCC‑CCAACCCTGAACCC‑GTTTCGCCGTCAACGGGGCGGGGGGGCTGTCACTGTGGccttcgcc > 2:1027235/1‑231 (MQ=255)
cgcgCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGt < 1:1125612/238‑1 (MQ=255)
gcAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTAtt < 2:1189851/238‑1 (MQ=255)
gcAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGGTAACGTCGGCGGGGCGTTTAACCTGT‑TCCAG‑CAAAACATGAACCA‑GGTTTGCCCTCAGCGGGGCGGGGGGGTTGTTCCTGTGGCGTCCGACCCCCCGCACCCGCcccggaatg > 1:39395/1‑234 (MQ=255)
aaGTGTGTCAGCGACTGTTAGCTGAAACGGGGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCATCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGc < 1:546850/239‑1 (MQ=255)
tgtgtCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGGTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGGTTGTTACTGTGGCGGCCGGCGCCGCGCACACCCCGCGGATTTGCAtt > 1:793689/1‑238 (MQ=255)
gtgtCAGCGACTGTTAGCTGAAGCGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATg < 1:1110695/238‑1 (MQ=255)
gtgtCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCAt < 1:1151462/237‑1 (MQ=255)
gtgtCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATg < 1:746339/238‑1 (MQ=255)
tgtCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCCGCAGACTTTTGCGGGTAACGTCCGCGGGGCGGTTTACCCTT‑TCCCG‑CAAACCATGACACA‑GTTTTGCCCGCCGCGGGGGGGGGCGGCTTTTCCTTTGGGGCCCCGCGCCCCCCACACGCCGCGTACTgggcgtgg > 2:743143/1‑233 (MQ=255)
gtCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAg < 1:61539/238‑1 (MQ=255)
cgcgCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGc < 1:1232121/238‑1 (MQ=255)
tCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGtt < 2:556964/238‑1 (MQ=255)
cggcggGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGt < 2:823758/238‑1 (MQ=255)
cggGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCgg < 1:429152/238‑1 (MQ=255)
ttttACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGaa < 1:128138/239‑1 (MQ=255)
tACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTg < 2:33815/239‑1 (MQ=255)
aTGGGCGCGACCGATCAGCTCAGTAAAGCGGACTGGCAGCAGACTTTTGCGGCTAACGTCTGCGGGGCGTTTAACCTGT‑TCCAG‑CAAACCATGGACCA‑GGTTCGCCGTCAGCGGGGCGGGGCGCTTGTCACTGTGGCGGCCGGAGCCGCGCACCCGCCGCCGATTGGGATGAGTGCTTATGGGGCCTGGGAAGGGGCGCCGACAAAGCTGGCTGTGCGCGGCGCGGCGGAACTgggcgg > 2:885983/1‑235 (MQ=255)
aTGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCggg > 1:582694/1‑239 (MQ=255)
gggCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCCCCCCCGCGCCCCAGCCCCGCATTGGCCTGAGTGCCTTTGGCGCCTCGCAACGCGCCCTCAAAAGCCTGGCGTTGCGCGTTGGGCCGGGACTGGCCGGtg > 2:499016/1‑238 (MQ=255)
ccGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTg < 1:99320/239‑1 (MQ=255)
ccGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTg < 1:1144763/239‑1 (MQ=255)
ccGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTg < 1:212128/239‑1 (MQ=255)
gATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTgcg < 1:784597/239‑1 (MQ=255)
agGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGc > 1:501306/1‑198 (MQ=255)
agGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGc < 2:501306/198‑1 (MQ=255)
agGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGGTGCGGCGGGGGCCGTCAAGTGGgttt > 1:461220/1‑237 (MQ=255)
agtcTTTTGCGGTTAGCGGCGGCGGTGCGTTTAGCCTGT‑GCCAG‑CAAACCATGACCCA‑GTTGCGCCGTCAGCGGGGCGGGGTGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTcc < 2:8431/233‑1 (MQ=255)
cTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCcaccga < 1:538480/238‑1 (MQ=255)
ttttGCGGTTAACGTCGGCGGGGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCcaccgaca < 2:779810/239‑1 (MQ=255)
ttgtGCGGTTAACGGCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCcaccgaca < 2:39395/236‑1 (MQ=255)
tgttGCGGTTAACGTCGGCGGGGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCcaccgaca < 1:885983/237‑1 (MQ=255)
gTCGGCGGAGCGTATAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAacg < 1:245435/239‑1 (MQ=255)
cggcggTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAacgca < 1:64806/239‑1 (MQ=255)
cggTGCGTTTAACCTGT‑TCCAG‑AAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAacgcacg < 1:383808/238‑1 (MQ=255)
tGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAACGCACGCtg < 1:651070/238‑1 (MQ=255)
|
AAGTTACAGGTTTTGATCAAGCGTTCACTCAGGAGCAATATCCCTTTGCGACCGAAGTGATGGATGTTGCCGACGCTGCGCAGGTCGCGCAAGTGTGTCAGCGACTGTTAGCTGAAACGGAGCGACTGGACGCGCTGGTCAATGCGGCGGGAATTTTACGCATGGGCGCGACCGATCAGCTCAGTAAAGAGGACTGGCAGCAGACTTTTGCGGTTAACGTCGGCGGTGCGTTTAACCTGT‑TCCAG‑CAAACCATGAACCA‑GTTTCGCCGTCAGCGGGGCGGGGCGATTGTCACTGTGGCGTCCGACGCCGCGCACACGCCGCGTATTGGCATGAGTGCTTATGGCGCATCGAAAGCGGCGCTGAAAAGCCTGGCGTTGAGCGTCGGGCTGGAACTGGCGGGTAGCGGCGTGCGCTGTAATGTGGTTTCGCCTGGCTCCACCGACACCGATATGCAACGCACGCTG > NC_000913/628642‑629105
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
