Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F9 I0 R1
|
75 |
124.0 |
2465218 |
96.8% |
2386331 |
230.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,862,673 |
G→A |
16.1% |
pseudogene (931/1617 nt) |
glvC ← |
pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,862,673 | 0 | G | A | 16.1%
| 79.3
/ 4.1
| 63 | pseudogene (931/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| Reads supporting (aligned to +/- strand): ref base G (25/24); new base A (6/3); total (33/30) |
| Fisher's exact test for biased strand distribution p-value = 4.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.76e-01 |
TTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGTTGC‑GGGAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGT > NC_000913/3862436‑3862909
|
tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TCAAGGTGC‑GGGAAAC‑Agg > 1:671438/1‑238 (MQ=255)
tttGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGTTGC‑GGGAATC‑AGc < 1:893081/239‑1 (MQ=255)
aGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGAGTACCGCAAACAGCAACGGGGAAATGAAAAGGAAGGCAAATTCCAGAGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAAGGTGG‑TGGGATT‑AGC‑AAGtc‑cc > 2:29728/1‑237 (MQ=255)
tatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGGTCGGGAATTCCCACCAGCATGGC‑GG‑T‑GTGGGTTGC‑GGGCATC‑AAC‑CAGcc‑ccgacccttt > 2:929592/1‑230 (MQ=255)
cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAGGTTTC‑GGGAATC‑AGA‑AAGCC‑CGCCC‑CCTTT‑A‑ccc > 1:143025/1‑237 (MQ=255)
cgTGGTTGCTGAACATCGGGATACAGTTTTGCGGCAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGAGTACCGCAAACAGCAACGGTGAAATGAAACGGAAGGTAAATTCCAGCGGTGCGGTAATTCCAACAAGCATGGC‑GG‑T‑TGAAGTTGT‑GGGAATA‑AGC‑AAGCCACGTCA‑CTTTC‑A‑ccgg > 2:326370/1‑237 (MQ=255)
gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGC‑GGGGGTC‑AGC‑AAACC‑CCCCC‑CCTTT‑c‑cccccgttt > 2:672052/1‑233 (MQ=255)
gCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATCCCCACCAGCATGGC‑GG‑T‑CACTAGTGA‑GGGAGCC‑CGT‑CACCC‑CCCCC‑CTCTT‑A‑CCCGATTTTct > 2:779348/1‑237 (MQ=255)
gAACAGCGGGACCCAGTTTTGCGGTAAAACCTAGTCAATCAGCCCCCCGCCCATGTTGCCCACCACACCAAAGAGATACATTAGGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGAAAACAGCAACGGTGAAATGAACAGGAAGGAAAATCCCAGCGGTTCGGTAATCCCCACCAGCATGGG‑GG‑T‑TAAGGTTGC‑GGGAATC‑AGA‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTg < 1:1024951/239‑1 (MQ=255)
cAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGC‑GGGGATC‑AGC‑AAGAC‑CCCCC‑CTTTT‑T‑CCCGATTTTTCCGTGGGGCCGGGAAGTa > 1:414044/1‑239 (MQ=255)
ttGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TTAGGGTGG‑GGGGATC‑AGC‑AAGCC‑CCCCA‑CTTTT‑A‑ACCGATTTTCCGGTGGGGCGGGGAAGGACacc > 1:1183473/1‑236 (MQ=255)
cGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGC‑GGGGAAC‑AGC‑AAACC‑CCCCC‑ATTTT‑A‑CCCGATTTTTCGGGGCGGGAGGGAAGGACATCG‑Ctc > 1:725604/1‑238 (MQ=255)
aaaCCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGC‑GGGAATC‑AGC‑CAGCC‑CGCCA‑CATTT‑A‑CCCGGTTTTTCGGGGCGGCAGTGAAAGAAAACG‑CC‑AAAGaa > 1:1179920/1‑239 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGG‑GGGAATC‑AACAAACCC‑CCCCC‑CTTTT‑A‑CCC‑ATTTTTCGGGGCGGCAGGGAAGGACAACC‑CT‑CAAAAAAAACCCACC‑G‑c > 1:804903/1‑238 (MQ=255)
tCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAAGTTGC‑GGGGATC‑AGC‑AAAAC‑CGCCC‑CTTTT‑A‑CCCGATTTTTCGGTGGGGCAGGGAAGGAAATCG‑CT‑AAAAAAAAGCCCACC‑G‑c > 1:1100845/1‑238 (MQ=255)
cAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGAT‑TAAGG‑TGC‑GGGGATC‑AGC‑AAGGC‑CGCCA‑CCTTT‑A‑TCCGATTTTTCGGTGCGGCCGGGGAGGACAATC‑CT‑AAAGAAATGCCCACG‑G‑Ca > 1:730278/1‑238 (MQ=255)
cGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGG‑GGGGAAC‑AAC‑AAAAC‑CCCCC‑CTTTTAA‑CCCCTTTTTCCGG‑GCGGCAGGGAAGGACATCC‑CC‑AAAAAAAACCCCCCGCG‑CACCAAAgtt > 2:578228/1‑237 (MQ=255)
tGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TAGGGTTGG‑GGGAA‑C‑AGC‑AAGGC‑CCCCC‑CCTTT‑T‑CCCGGTTTTCCCGTGCGGGCGTGAAATACCTCC‑CT‑AAAGAAAAGCCCCCA‑G‑CACCCAAGATTTTTTAGtt > 1:992772/1‑238 (MQ=255)
tGCCCACAACACAAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTAAAATGAACAGGAAGGAAAATTCCAGCGGTTCGGTAATCCCCACCAGCAGGGC‑GG‑T‑TAAGGTTGC‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑a < 1:672052/239‑1 (MQ=255)
gCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GGTT‑TAAGGTT‑C‑GGGAATC‑AGC‑AAACC‑CCCCC‑CTTTT‑A‑CCCCATTTTTCCGGGCGGCCGTGAAATAAAACG‑CG‑AAAGAAAAACCCCCC‑G‑CCCCAAAGATTTTTGAGttt > 1:1133954/1‑237 (MQ=255)
gCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGCGGGGAATA‑GCC‑AACCC‑CCCCC‑CTTTT‑C‑CCCG‑TTTTTCGGTGGGGCGGGGAAGGACATCG‑CT‑AAAAAAAAGCCCACC‑G‑CCCCCAAAATTTTTTGGTT‑a > 2:494058/1‑238 (MQ=255)
agaTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TTAGGGTGC‑GGGGATC‑AGC‑AAGCC‑CCCCC‑CCTTT‑A‑CCCCATTTTCCGGTGCGGCAGGGTAGAAAAACG‑CT‑AAAAAAAAGCCCCCC‑G‑CACCCAAGAGTTTTTAGTT‑TCCGTGCCGGGG‑aaaaa > 2:1118046/1‑237 (MQ=255)
aTACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TTAAGTTGC‑GGGGATC‑AGC‑AAAGC‑CCCCA‑CCTTT‑T‑CCCCATTTTTCCGGGCGGCAGGTGAGTAAAACGCCC‑AAAAAAAACCCCACG‑C‑ACCCAAAAATTTTTTGGTA‑CCCTTGCAGGGA‑AAAAcc > 1:692032/1‑238 (MQ=255)
tACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTGC‑GGGGATC‑AGC‑AAACC‑CGCCA‑CTTTT‑T‑CCCGCTTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAAAAATGCCCCCG‑G‑CACCAAAGATTTTTTAGTT‑ACCGTGCAGGGC‑AAAACCG‑c > 1:1083222/1‑238 (MQ=255)
tACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGCGGG‑T‑TAAGG‑TGT‑GGGGACC‑AGC‑CAAAC‑CGCCA‑CCTTT‑A‑TCCGATTTTTCCGGGCGGCAGGGAAGTAAAACC‑CG‑CCAGAAAAACCCACG‑GCCCCCAAGGATTTTTGGGTT‑‑TCGGGCGGGGC‑AAAAcaccctctc > 2:1164301/1‑230 (MQ=255)
cGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAGGATGC‑GGGAATC‑AGC‑CAAAC‑CGCCC‑CTTTT‑ACCCCGATTTT‑CGGGGGGGCCGTGGAGGACAACG‑CT‑CAAAAAAAACCCACG‑G‑CCACAAAGGATTTTTAGTT‑TACGCGCCGGGC‑AAAAAAG‑CCCTCCcgg > 2:768516/1‑239 (MQ=255)
ggTAGACATGGAGGCCGCCAGCACGGCGTGTCCCGAAAACAGCAACGGTAAAATGAACGGGAAGGTAAATCCCAGCGGTTCGGTAATCCCCCCCGGCGTGGG‑GG‑T‑TAGGGTGGC‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCggg < 2:1100845/238‑1 (MQ=255)
gTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAAGTTGC‑GGGGAAC‑AGC‑CAACC‑CCCCA‑CCTTT‑T‑CCCCCTTTTTCCGTGCGGCAGGGGAGAACACAC‑CT‑CAAAAAAAGCCCCCG‑G‑CACCAAAACATTTTGAGTT‑AACGTGCAGGGC‑AAAAACC‑CCTTCCcggt > 2:424778/1‑237 (MQ=255)
gACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAGGGTTC‑GGGAATC‑AGC‑AAACC‑CCCCC‑CTTTT‑T‑CCCGATTTTTCGGTGCGGCAGGGAAATACATCG‑CT‑AAAGAAAAGCCCACG‑G‑CCCCAAAGATTTTTTAGTT‑ACCGTGCAGGGG‑AAAAACC‑CCCTCCGGGaaaaa > 1:65011/1‑239 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TTAGGGTGG‑GGGAAGC‑AAC‑CAGCC‑CCCCACCTTTT‑A‑CCC‑ATTTTTCGGGGCGGCGGGGAAGTACACCG‑CC‑AAAGAAATTACCCCG‑G‑GCCCAAAGAATTTTTTTGT‑ATCGGGCCGGGCGAAAACGA‑CCTTCCGGG‑ACAAAGAttttcaagg > 2:15665/1‑233 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAAGGTTC‑GGGGATCAAGA‑AAGCC‑C‑CCC‑CTTTT‑T‑ACCGATTTTTCGGTGCGGCGGGGAAGTAAATAG‑CT‑TAAAAAAATCCCCCG‑G‑CCCCCCAGAATTTTTAGTTAACCGGCCCGGGA‑AAAACGC‑CCTCCCGGGaaaaaggtctctacg > 2:573412/1‑228 (MQ=255)
gccAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAAGGTGC‑GGGGAAC‑AAG‑AAGGC‑CCCCA‑CCTTT‑T‑CCCGACTTTTCTGGGTGGCAGTGGAGGACAACGACT‑AAA‑AAAAACCCCCC‑G‑CCCCCAAGAAGTTTTTGTT‑ACCGCGTCGGGG‑ACAAACG‑CCCTCCCGGAACAACAACTTCAGCg > 2:21287/1‑238 (MQ=255)
cgggtcccGAAAACAGAAACGGTGAAATGAACAGGAGGGTAAATCCCAGCGGTGCGGAAATCCCCACCAGCAGGGC‑GG‑T‑TAGGGTGGG‑GGGAATA‑AGC‑AGGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCt < 1:1168160/232‑1 (MQ=255)
cGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑G‑TAAGGGTGG‑GGGAAAC‑ACG‑AAACC‑CCCCC‑CTTTT‑T‑CCCCGTTTTTCCGTGCGGCAGTGAAGTAACACG‑CTAAAAAAAAGGCCCCCG‑C‑CCCCAAAG‑TTTTTTAGTT‑ACCGGGCAGGGG‑AAAAACGCCCTTCCGGG‑ACAACGATTTTCGCGCGTCGGGGCt > 2:640789/1‑238 (MQ=255)
cccaaaaCAGCAACGGTAAAAGGAACAGAAAGGAAAATTCCAGCGGTCCGTTAATCCCCACCAGCATGGC‑GG‑T‑TAGGGTGGC‑GGAAACC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTg < 1:599170/235‑1 (MQ=255)
ccGCAAACACACAGGGTAAAATAAACAGAAAGGAAAAGTCGAGCGGTTCGGTAACTCCCCCCGGCCGGGC‑GG‑T‑AAGGGGTGG‑GGAAACC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTg < 2:1168003/239‑1 (MQ=255)
cAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGGTTC‑GGGAATC‑AAA‑GAGCC‑CGGCA‑CTTTT‑A‑CCCGGTTTTCCGGTGCGGCAGGGGAGGACAACC‑CT‑CAAGAAATGCCCCCG‑G‑CCCCCAAGAATTTTGTGGT‑ACCGTGCCGGGC‑CAAAACG‑CCCTCCCGGGACAAAGATTTTAGCGGGTCGGCGCGCACACtagaccacctg > 2:615608/1‑228 (MQ=255)
aggggTAAAATAAAGAGAAAGGAAAATTCCAGCGGTCGGTTAATCCCCACCAGCATGGC‑GG‑T‑TAAGGTGGG‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAg < 1:853302/236‑1 (MQ=255)
gTGAAATGAACAGAAAGGAAAATTCCAGCGTTTCGGTAATCCCCACCAGCAGGGC‑GG‑T‑TAAGGTTGC‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtg < 1:1118046/238‑1 (MQ=255)
aaaaTGAACAGGAAGGAAAATTCCGGCGTGCCGGAAATCCCCACCAGCATGGT‑GT‑T‑TAGGGTGGC‑GGGAACC‑AAC‑AACCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGAtgct < 2:804903/237‑1 (MQ=255)
aaagAACAGGAAGGTAAATCCCGGCGGTCCGATAATCCCCACCAACAGGGC‑TG‑T‑TAAGGTTGG‑GGGAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:15665/236‑1 (MQ=255)
aaTGAAGAGAAGGGTAAATCCCGGGGGTTGGGTAATCCCCCCCGGCAT‑GC‑GG‑TGTAAGTGGGC‑GGAAACC‑AGA‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:745465/239‑1 (MQ=255)
aaTGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCCCCAGCAGGGC‑GG‑T‑TAAGGTGGC‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTgcg < 1:471051/239‑1 (MQ=255)
taaaCAGGAAGGAAAATCCCAGCGGTTCGATAACCCCCACCAGCATGGC‑GT‑T‑TAAGGTGGG‑GGGAACC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:1099592/237‑1 (MQ=255)
tGAACAGCAAGGTAAATACCAGCGGTTCGTTAATTCCCACCAGCATGGC‑GG‑T‑TTAGGTTAC‑GGGAATC‑AAC‑AAGCC‑CGCCA‑CCTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTGCATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:876063/239‑1 (MQ=255)
tGAACAGAAAGGAAAATCCCAGCGTGGCGTTAATCCCCCCCAGCTTGTG‑GT‑T‑TAGGGTGGC‑GGGAATC‑AGC‑AAGGC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 1:929592/239‑1 (MQ=255)
agAACAGTAAGTTAAACCCCAGTGGTGTGATATCCCCCCCCAGCATGGC‑GT‑T‑TAGGGGTGC‑GGAAACC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGcc < 2:725604/238‑1 (MQ=255)
aGGAAGTTAAATTCCGGCGGTTTGGTAATCCCCACCAGGATGGC‑GT‑T‑TGTGGTTGC‑GGAAATC‑ATC‑ATGAC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGTGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa < 1:144653/239‑1 (MQ=255)
gaaaGGTAAATCCCGGCGGTCCGTAAACCCCCCCCAGCGTGGG‑GT‑T‑TAGGGTGGC‑GGAAACC‑AAA‑AACCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCGCG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTa < 2:16444/236‑1 (MQ=255)
tCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGTTGC‑GGGAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGGGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCGCG‑G‑CACCAAAGATTTTTTAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGGACAAAGATTTTAGCGGCTCGGGGCCCAAAATGAACTCTTGCAGATGCTGCGCCCAGGACATCTGAATgc > 1:16444/1‑238 (MQ=255)
atccccACCAGCATGGC‑GG‑T‑TAAGGTTGC‑GGGAACA‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGc < 1:615608/236‑1 (MQ=255)
cgcgaaTGGC‑GT‑T‑AAGGGTCGC‑GGAAATA‑AGA‑ACGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:327359/234‑1 (MQ=255)
ccacaagggC‑GG‑T‑AAGGGGTGC‑GGAAATC‑AGA‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 1:549684/232‑1 (MQ=255)
ccaGCTGGGC‑GG‑T‑TAGGGTGGC‑GGGAACC‑AGC‑ACGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCa < 2:992772/239‑1 (MQ=255)
c‑GG‑T‑TAAGGTTGG‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 1:1216924/238‑1 (MQ=255)
cgttatggtgggC‑GGTAATC‑AGC‑CACCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATaaa < 2:1179920/227‑1 (MQ=255)
gtaaggtgggC‑GGAAATA‑ACC‑AACCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACt < 1:687554/229‑1 (MQ=255)
tAAGGTTGG‑GGAATTC‑ACA‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCATTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTc < 1:520416/239‑1 (MQ=255)
agggTTGC‑GGAAATC‑AGC‑AGGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCAGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTcc < 1:743909/237‑1 (MQ=255)
agggTTGC‑GGAAATC‑AGC‑AACCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTcc < 1:640789/237‑1 (MQ=255)
gTTCC‑GGAAATC‑AGC‑AAGCC‑CGCCA‑CCTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGt < 1:664855/238‑1 (MQ=255)
c‑GGGAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGGACATATGAATGCCGCCTTCAACCGCTGCCGGACCAAAGATAACCTGTCCGTAgtcg > 2:735657/1‑236 (MQ=255)
tC‑AGC‑AAGAC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGTGCTCAAACTGAACTCTTGCAGATGATGCGCCCAGTACATTTGAAAGCCCCCTTCCACAGCTGCCGGACCAAAGCTACATTGGCCGTAGagtaagggg > 2:775094/1‑231 (MQ=255)
c‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCACTACATCTGAATGCCGCATTCAACAGCTGCCAGTCCAAAGATAAACTGGCCGTCGATGaatcggt > 2:689575/1‑234 (MQ=255)
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TTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCATGGC‑GG‑T‑TAAGGTTGC‑GGGAATC‑AGC‑AAGCC‑CGCCA‑CTTTT‑A‑CCCGATTTTCCGGTGCGGCAGTGAAGTACATCG‑CT‑AAAGAAATGCCCACG‑G‑CACCAAAGATTTTTGAGTT‑ACCGTGCAGGGC‑AAAACCG‑CCTTCCGGGAACAACGATTTCAGCGGCTCGGCGCTCAAACTGAACTCTTGCAGATGCTGCGCCCAGTACATCTGAATGCCGCCTTCAACAGCTGCCGGACCAAAGATAAACTGTCCGTAGATGAAGTGGT > NC_000913/3862436‑3862909
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
