Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 150 105.7 2655328 79.3% 2105675 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,289,078 C→A 13.8% Q89K (CAG→AAG)  yraJ → putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,289,0780CA13.8% 355.9 / 11.6 141Q89K (CAG→AAG) yraJputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base C (93/25);  new base A (3/18);  total (96/45)
Fisher's exact test for biased strand distribution p-value = 2.26e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 141 total aligned reads displayed.

CGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATG  >  NC_000913/3288844‑3289312
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
cGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGaa                                                                                                                                                                                                                                          <  1:111053/239‑1 (MQ=255)
 gCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGaaa                                                                                                                                                                                                                                         >  1:195353/1‑239 (MQ=255)
  cacaCCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTACCGCCGAAAAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGAGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGAAATCT‑GGCTGAATAAAAAAAAGGTTTCACAGaaaa                                                                                                                                                                                                                                        >  1:699866/1‑239 (MQ=255)
       cGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACACCTACCAG‑GA‑ACTTATCAGGTTGATATAT‑GGCTGAATAAAAAGAAGGTTTCAAAAAAAAAAAtt                                                                                                                                                                                                                                   >  2:870409/1‑239 (MQ=255)
        gAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTa                                                                                                                                                                                                                                  <  2:908978/239‑1 (MQ=255)
               ttGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑Ta                                                                                                                                                                                                                          >  1:1107462/1‑238 (MQ=255)
               ttGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑Ta                                                                                                                                                                                                                          >  1:1271514/1‑238 (MQ=255)
                 ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAACAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATACCT‑GACTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TAcc                                                                                                                                                                                                                        >  1:1024093/1‑238 (MQ=255)
                 ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAACAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TAcc                                                                                                                                                                                                                        >  1:170602/1‑238 (MQ=255)
                 ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TAcc                                                                                                                                                                                                                        >  1:682798/1‑238 (MQ=255)
                 ggCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑GATGCAAACAACCGATCTGTCCCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGATTCACAGAAAAAAATTACA‑TT‑TAcc                                                                                                                                                                                                                        >  1:902494/1‑238 (MQ=255)
                                  gttgttTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGGAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑CCTTATCAGGTTGATATCT‑GGCGGATTAAAAAGAAGGTTCAACAGAAACAAATTACA‑TT‑TACCGCCAATGCAAAACaaat                                                                                                                                                                                                       >  2:624107/1‑236 (MQ=255)
                                     ttttGCCGATGGTGCTCACTGGCAGCGGCATGCTTGGCACTACCGCAAACGCCAAAGAGTTTTATTCCGACCCCATTATGCGGGAAACCAAAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑CAACAACTCCCAG‑GA‑CCTTATAAGGTTGATATCT‑GGTTGAATAAAAAAAAGTTTTCCCAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTg                                                                                                                                                                                                   <  1:1000071/238‑1 (MQ=255)
                                        tGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAAAAAAAAATTACA‑TT‑TACCCCCAATGCAGAGAAAATTCGGCAg                                                                                                                                                                                                >  2:1013698/1‑239 (MQ=255)
                                              tGGTGCTCACTGGCAGCGGCATGCTTTGCAATACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTCTGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGCTCTGTCGCGGTTTTCAAAAAAATTT‑GCACAACCACCAT‑GA‑ACTTATCAGGTTGTTATCT‑TGCTGAATAAAGAGCAGGCTTCAAAGAAAAAAATAACA‑TT‑TACCCCCAATGAATGGCAACTTTTgacaccacaa                                                                                                                                                                                          >  2:720432/1‑230 (MQ=255)
                                                       cTGGAAGCGGAATGTTTTTCACTACCGCTAACGCGGAGGAGTATTATTTCGACCCCATTATGCTGGAAACCAAAAAAAGTGG‑TATGCAAACAACCGATCTGGCGCTTTTTTAAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTAAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTa                                                                                                                                                                                 <  1:526593/239‑1 (MQ=255)
                                                           caccgtcATGCGTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GCATGAATAAAAAGAAGGTTTCACGGAAAAAAATTACA‑TT‑TAACCCCAAGGAAAAACACATCCTGCAGCCAAAGTTAACGGAAAaac                                                                                                                                                                             >  2:315655/7‑239 (MQ=255)
                                                               ggCTTGTTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTAGGCTGAAAACCAAAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCTTTTTTAAAAAAAATAG‑GCACAACTCCCAG‑GA‑ATTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCAAAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGaacaa                                                                                                                                                                           <  1:437542/237‑1 (MQ=255)
                                                                gCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAATTTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCCCAGTTTCCGGTAGAACAACt                                                                                                                                                                         >  1:785628/1‑238 (MQ=255)
                                                                 ctttttttGCACTCCCGATAAGCCCAAAGATTTTTTTTTCGCCCCAATTAGGGTGGAAACCAAAAAAAGTGG‑TATGCAAACAACCGACTTGTCGCTTTTTTCAAAAAAATAT‑GCACAACAACCAG‑GA‑TTTTATCAGTTTGATATCT‑GGTTGAATAAAAAGAAGTTTTCACAGAAAAAAATTAAT‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTa                                                                                                                                                                        <  1:487671/233‑1 (MQ=255)
                                                                      ttggcaaacccGTTAACGCAGAAGAGTTTTATTTCGCCCCCTTTATGCTGGAACCCAAAAAATGGGA‑GATGAAAAGATCCTATCTGCCGCTTTTTCAAAAAAAATAT‑ACA‑GACTGACAG‑GAGATTAATCGGGTTAATCTCT‑GCGTGAAAAAAAAGACGGTTCCAAAGAAAAAAATTCCG‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAg                                                                                                                                                                  <  2:794235/230‑1 (MQ=255)
                                                                        tctcatACCGCTAACCACGAAGGTTTTTTTTCCCACCCCTTTATGGTGGAAACCAAAAAAAGGGG‑TAAGAAACAAACCGATTGGTCGTGTTTTAAAAAAAAAAAG‑GCCAAACTCCCGG‑GA‑ATTTATCAGGTTGATACCG‑GGCTAAAAAAAAAAAAGGTTCAACAAAAAAAAATTACT‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCt                                                                                                                                                                <  2:401136/234‑1 (MQ=255)
                                                                        tGCCCTCCCGCTAACCCCGAAGAGTTATATGTCGACCCCTTTATGCTGGAAACCAAAAAAAGTGG‑TATGCAAACAACCGATCTGCCGCTTTTTCAAAAAAAAGAT‑GCAAAATGACCAG‑GA‑ACTTAACGGGTTGATATCT‑GGCTGAATAAAAAGAGTGTTTCCCAGAAAAAAATTCCA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCt                                                                                                                                                                <  1:306006/239‑1 (MQ=255)
                                                                        tGCCCTACCGCTAACGCAGAGGTGTATTATTTCGACCCAATTATGCGGGAAACCAAAAAAAGTGG‑TTTGAAAACAACCGTTTTGTCGGGTTTTCCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTGGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCt                                                                                                                                                                <  1:799008/239‑1 (MQ=255)
                                                                          cACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTgg                                                                                                                                                              >  1:140874/1‑239 (MQ=255)
                                                                               ccGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTAACAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAAAAGGTTTACAAGACAAAAATTACA‑TT‑TACGGCCAATCCAAAGCAAATTCTACACCCACAGTTTACGGTAGAACAAACACGCGAACCGGGAAtt                                                                                                                                                         >  2:1086494/1‑239 (MQ=255)
                                                                               ccGATAACGCCAAAGAGTATTTTTGCGACCCAATTTGGCTGGAAACCAAAAAAAGTGG‑AAGGCAAACAACCGATCTGCCGGGTTTTTAAAAAAAATAG‑GAAAAACTACCAG‑GA‑ACTTATCAGTTTGATATCT‑GGTTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTAtt                                                                                                                                                         <  1:405662/239‑1 (MQ=255)
                                                                                  cTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAACAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGATTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACCGTTTACGGTAAAACAACAACTGGACCGGGGAATTagg                                                                                                                                                      >  2:1113507/1‑237 (MQ=255)
                                                                                  cTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAg                                                                                                                                                      >  1:1146885/1‑239 (MQ=255)
                                                                                     aCGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAg                                                                                                                                                      >  1:1113089/1‑236 (MQ=255)
                                                                                           aaGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGATGaa                                                                                                                                             >  1:867130/1‑239 (MQ=255)
                                                                                                   tattTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAAAAGGTTTCACAGAAAAAAATTAAA‑TT‑TACCGCCAATGCAGAGCAACTTCTACAGCCAAAGTTTACGGTAGAAAAACAACTTGAGCTGGGAATTAAGGTGGATGAAATCCCGgc                                                                                                                                     >  2:339203/1‑239 (MQ=255)
                                                                                                        cGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑CCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGGGAAACTTCTGCAGCAACAGTTTACGGTAGACCAACTACTGAAGCTGGGGATTAAGGGGGATGAAATCCCGCCgcggg                                                                                                                                >  1:1178853/1‑239 (MQ=255)
                                                                                                          aCCCTATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCcctggct                                                                                                                              >  1:1282493/1‑239 (MQ=255)
                                                                                                          aCCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAACAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGAAACTTCTGCAGCAACAATTTACGGTAGAAAAACAACATGAGCTGGGTTTTAGGGGGGATAAAATCCGGgcgcgcttg                                                                                                                              >  2:1257114/1‑234 (MQ=255)
                                                                                                          aCCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAACAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAAAAAAAAATTACC‑TT‑TACCGCCAATGCAAAGCAACTTCTGCAGCAACCATTTCAGGTAGACTAACTACGTGACCTGGGTATTAAGGGGAATGAAATCCCGgcccagacg                                                                                                                              >  2:1299989/1‑232 (MQ=255)
                                                                                                          aCCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATCTCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAACAATTACA‑TT‑TACCGCCAATGCAGAGAAACTTCTGCAGCCACCATTTACGGTAGAACAAATAGGTGAGATGGGTCTTCAGGTGTGTGAAAACCCTGCgctg                                                                                                                                 >  1:937952/1‑236 (MQ=255)
                                                                                                          aCCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCgctg                                                                                                                                 >  1:817456/1‑236 (MQ=255)
                                                                                                          aCCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGGATTAAGTTGGATGAAATCCCGCCgctggcg                                                                                                                              >  1:798538/1‑238 (MQ=255)
                                                                                                              cATTTTGCGGAAAACAAAAAAAAGGGG‑TACGAAAAAACCAGTACTGTGGGGTTTGTAAAAAAATAAA‑GCAAATGTACCAG‑AA‑ATTTAGAAGGTT‑AAATCTGGGCGAAAAAAAAAGAAGTTTCCAAAGAAAAAATTTACA‑TT‑AACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGaaa                                                                                                                          <  2:817456/239‑1 (MQ=255)
                                                                                                              cATTAGGCTGAAAACCAAAAAAAGTGT‑TATGCAAACAACCGATCTGGCGCTTTTTCAAAAAAAATAG‑GCCCAACTACCAG‑GA‑ACTTATCAGGTGGATATCT‑GGCAGAAAAAAAAGAAGGTTGCAAAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGaaa                                                                                                                          <  1:26379/239‑1 (MQ=255)
                                                                                                               aTTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGaaaa                                                                                                                         >  1:80549/1‑239 (MQ=255)
                                                                                                                  ttttttaaaaCCA‑AAAAAGTGGTTATGAAAACACCTGTTTTGTCGCGTTTTTAAAAAAAATAC‑GAACATCT‑CCAGACA‑CCATATCAGTGGTATCTCT‑GGGTGAAAAAAAGAAATGTTTAACAAAAAAAATTTACT‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGATTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGa                                                                                                                      <  2:212120/232‑1 (MQ=255)
                                                                                                                     cTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGCCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCCCAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTATACCAACTACGTCGCACGGGCATTAAGGTGGATGAAACCCCGACGCTGGCTAAAAAAGATGa                                                                                                                   >  2:26379/1‑239 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGaaa                                                                                                                          >  1:62582/1‑229 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGa                                                                                                                >  1:429974/1‑239 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAAACCCGGGGCTGGCTGAAAAAGATGAGGa                                                                                                                >  2:1178372/1‑239 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGCATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGa                                                                                                                >  1:994839/1‑239 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGa                                                                                                                >  1:912760/1‑239 (MQ=255)
                                                                                                                        gAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGa                                                                                                                >  1:369531/1‑239 (MQ=255)
                                                                                                                             cacaAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAACAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACACCTACGTGAGCTGGGTTTTAAGGTGGATGAAATCCCGACCCGGGCTGAAAAAAAAGACGATAACg                                                                                                           >  2:157114/1‑239 (MQ=255)
                                                                                                                               aaaaaaGTGG‑TAAGCAAGAACCCGATCTGCCCTGTTTTACAAAAAAATAT‑GAACAACTACCAG‑GA‑ATTTATGAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTAAA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTg                                                                                                         <  1:988810/238‑1 (MQ=255)
                                                                                                                               aaaaaaGGGG‑TATGCAAACAACCGATCTGGCGCTTTTTTAAAAAAAATTT‑GCACAACTACCAG‑GA‑ACTTAACAGGTTGATATCT‑GGCTGAAAAAAAAGAAGGTTTCACAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTg                                                                                                         <  1:222783/238‑1 (MQ=255)
                                                                                                                                    agggg‑TAAGCAAAACACCGTTTTGTCGCTTTTTAAAAAAAAATAT‑GCCAAACTACCAG‑GA‑ACTTAACAGTTTTATATCT‑GGCGAAATAAAAAGAAGGTTTCAAAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCaa                                                                                                    <  1:683548/236‑1 (MQ=255)
                                                                                                                                    agggg‑TAAGAAAACACCCGATCTGTCGCTTTTTTAAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCG‑GGCTGAAAAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGAAGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCaa                                                                                                    <  1:339203/236‑1 (MQ=255)
                                                                                                                                        g‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACtg                                                                                                 >  1:838672/1‑237 (MQ=255)
                                                                                                                                          tatcaaaaCAACCGATCT‑TTGCGTTTTTTAAAAAAAAGTGGCACAACTACCAG‑GA‑ACTTATCAGGTTGATTTCT‑GGCTGAATAAAAAGAAGGTTACAAAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGc                                                                                               <  1:28127/234‑1 (MQ=255)
                                                                                                                                                 acaacCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGCATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACACCTACGTAAGCTGGGTATTCAGGTGGATAAAATCCCGGAGCTGGCTGAAAAGGATGACGATAGCGTGATCAAATCGCTTGaaaa                                                                                        >  2:9011/1‑237 (MQ=255)
                                                                                                                                                   aacCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTTAGGTGGATGAAATCCCCGCGCTGGCTGAAAAAGAAGACTATAAGGTGATAAAATCGATTGaaaaaa                                                                                      >  2:1233603/1‑239 (MQ=255)
                                                                                                                                                    acCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGTTATAACACCACCGTGAGCGGGGTATTAAGGTGGATGGAATCCCGGCCAGTGCTGAAAAAAGTGACGATAGCGGGATCAACCAGCTTGAACaaaa                                                                                     >  2:10989/1‑238 (MQ=255)
                                                                                                                                                     ccGATCTGTGGTGTTTTAAAAAAAAATAT‑GCAAAACAACCAG‑AA‑TCTTATAGGGTTGATATCT‑GGCTGAAAAAAAAGAAGTTTTACAAAAAAAAAATTACA‑TT‑GACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATc                                                                                    <  1:977077/239‑1 (MQ=255)
                                                                                                                                                      cGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAAATTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGCTGAAATCTCGGCGATGGCTGAAAAAGATGACGAAAGCGGGATCAAATACCTTGAAAAAAtaa                                                                                   >  2:293587/1‑237 (MQ=255)
                                                                                                                                                          cTGTCGCGTTTTAAAAAAAAATAT‑GCACAACTACAGG‑GA‑ACTTATCAGGTTGATATCT‑GGCTAAAAAAAAAGAAGGTTTCACAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTcc                                                                               <  1:1178372/239‑1 (MQ=255)
                                                                                                                                                             tCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCgg                                                                            >  1:615674/1‑239 (MQ=255)
                                                                                                                                                               gcgTTTTTCAAAAAAATAT‑GCACAACTACCTG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGAAGCAACAGTTTACGGTAGAACAACTACGTGAACTGGGTATTAAGGTGGATGAAATCCCGGCGCTGCCTGGAAAAGATGACGATACCGGGAGAAACACCCTTGAAAAAACAATCCCCGATa                                                                          >  2:1012974/1‑239 (MQ=255)
                                                                                                                                                                                            ccAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACACCTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAATTCGCTTGAACCAATCATTCCCGGAACCGCTCCTGAATTTGATTTCAatcaca                                               >  2:119039/1‑236 (MQ=255)
                                                                                                                                                                                               aagA‑ACTTACAAGTGTGATTTCT‑GGCGAAAAAAAAAGAAAGTTCCACAAAAAATAATTACT‑TT‑AACCGCCAATGCAGAGCATCTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCAGGGTATTAAGGTGGATGAAATCCCGGCGCAGGCTTAAAGAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTTATTTCAATCATCAGc                                            <  1:135201/237‑1 (MQ=255)
                                                                                                                                                                                                    aCTTAACAGGTTGAAATCT‑GGCTAAATAAAAAGAAGGTTTCAAAAAAAAAAACTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACt                                        <  1:1066747/239‑1 (MQ=255)
                                                                                                                                                                                                     cTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACtt                                       >  1:57590/1‑239 (MQ=255)
                                                                                                                                                                                                     cTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCCGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGaa                                                                                          >  1:269489/1‑188 (MQ=255)
                                                                                                                                                                                                      ttATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGACCAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCATTCATCAGCAACTTa                                      >  1:226200/1‑239 (MQ=255)
                                                                                                                                                                                                        aTCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAAt                                    >  1:571702/1‑239 (MQ=255)
                                                                                                                                                                                                         tCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TCCCGCCAATGCAGAGCAACTTCTGCAGCCCCAGTTTACGGTAGAACAACAACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGCTAGCGTGATCAACTCACTTGAACAAATCATTCCCGGTACAGTCGCTGACTTTGATTTCAATCAACAACAACTTaaat                                   >  2:1289991/1‑237 (MQ=255)
                                                                                                                                                                                                             gTTGATATCT‑GGCTGAATCAAAAGAAGGATTCACAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGAATTAAGGTGGACGGAATCCCGGCGCTGGCTGAAACAGATGACGCTAGCGTGATCCACTCGCTTGAACAAATCATATCCGGAACAGCACCTAAATTTGTTTTACAACATACACAACTTAAtttaa                                >  2:1133520/1‑236 (MQ=255)
                                                                                                                                                                                                                gATTTCT‑GGCTGAAAAAAAAGAAGGTTTCAAAAAAAAAAATTCCA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCAt                            <  1:1013698/239‑1 (MQ=255)
                                                                                                                                                                                                                gATATTT‑GGCGAAAAAAAAAGAAGGTTACAGGAAAAAAAATTCAT‑TT‑TACCGCCAATGCAGAGCAACTTATGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCAt                            <  1:533508/239‑1 (MQ=255)
                                                                                                                                                                                                                gATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGATGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAAATTAATTTGAGCAt                            >  1:92317/1‑239 (MQ=255)
                                                                                                                                                                                                                gATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCAt                            >  1:866971/1‑239 (MQ=255)
                                                                                                                                                                                                                    ctgtggcaaaaTAAAAAAAATTTTTCAAAAAAAAAAATTTCA‑TT‑TCCCCCCAATGCAGGGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTcc                         <  2:80549/230‑1 (MQ=255)
                                                                                                                                                                                                                        ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCTGCGCTGGCTGACAAAGCTGACGATAACGTGATCAACTCCCCTGACAAAATCATCACCGGTACCGCTCCTGAATTTGTTTTCAATAATCAGCAACTAAATTTGAGAATTCCCCaa                     >  2:657605/1‑239 (MQ=255)
                                                                                                                                                                                                                        ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaa                     >  1:916049/1‑239 (MQ=255)
                                                                                                                                                                                                                        ggCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaa                     >  1:610042/1‑239 (MQ=255)
                                                                                                                                                                                                                         tgtaaaaaaaaaGAAGGTTTAAAAAAAAAAAATTATA‑TT‑TTCCGACCATGCAAGGCAACTTTTGCAGCCACAGTTTACGGGAGGAAAACTTCGGGAGTTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCATCTTAATTTGAGCATTCCCCaaa                    <  1:1257114/232‑1 (MQ=255)
                                                                                                                                                                                                                          ctaaaaaaaaaGAAGGTTTCACAAAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa                    <  1:1303974/232‑1 (MQ=255)
                                                                                                                                                                                                                          atGAATAAAAAGAAGGTTACCCAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCaaa                    <  1:374074/237‑1 (MQ=255)
                                                                                                                                                                                                                            gAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCAAAGTTTACGGTAGAACAACTCCGTGAGCTGGGTATTAAGGTGGAGGAAATCCGGGCGCTGGCTGAAAAAGCTGACGATAGCGGGTTAACATCGCTTAAACAAATCATTCCCGGTAACCCGGCTAAATTGTTTTTCAATCATCAACAACTTAATTTCA‑CAATCCCCAAAATgg                >  2:684978/1‑238 (MQ=255)
                                                                                                                                                                                                                            aaaaaaaaaGAAGGTTTCACA‑AAAAAAATTTCATTT‑TCCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTg                 <  2:866971/235‑1 (MQ=255)
                                                                                                                                                                                                                             actAAAAAGAAGGAATCACAGTAAAAAATTACA‑TT‑TACCGCCAATGCAGAGAAAATTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGATGGGTATTAAGGTGGCTGAAATGATGGCGCAGGCTGAAAAATATGACGATATCGTTATCGACTCGCTTGCACAACACCTACCAGGTACAGCTGCTGAATGAGATTTCCATCATCAGAAAATTAATTTAGCCATTCCCCAAATTga                >  2:1093818/3‑238 (MQ=255)
                                                                                                                                                                                                                             aaaaaaaaaGAGGTTTCAAAAAAAAAAAATTCA‑TTGTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAAtt                  <  1:1140211/235‑1 (MQ=255)
                                                                                                                                                                                                                             aaTAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCGAATGCAGAGCAACTTCTGCAGCCACAGTTTAAGGTAGAACAAATACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGCTGACGCTAGCGAGATAAACTCGCTTGACCAAATCATTCCCGCTACAGCTGCTGAATTTGATTTCAGACATTAGCAATTAATTTTTGGCATTCCCAAAATTGc                >  2:182101/1‑239 (MQ=255)
                                                                                                                                                                                                                             aaTAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGc                >  1:105885/1‑239 (MQ=255)
                                                                                                                                                                                                                             aaTAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGc                >  1:463058/1‑239 (MQ=255)
                                                                                                                                                                                                                              aTAAAAAGAAGTTTTCACAGAAAAAACTTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTTATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCa               <  1:315655/239‑1 (MQ=255)
                                                                                                                                                                                                                                      aatttttCAAAAAAAAAATTTACT‑TT‑AACCCGCAATGCAGGGACACTTCTGCAGCCAAAGGTTACGGTAGAACAAATACGGGAGCTGGGTAATAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCg       <  2:1282493/235‑1 (MQ=255)
                                                                                                                                                                                                                                       agGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAg                               >  1:631990/1‑214 (MQ=255)
                                                                                                                                                                                                                                       agGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTAAGCATTCCCCAAATTGCACTGTACCGt      >  1:749900/1‑239 (MQ=255)
                                                                                                                                                                                                                                       agGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGATGAATTTGATTTCAATCATCAGAAACTTAATTTGAGAATTCCCCAAATTGAACTTTaactt      >  2:561712/1‑235 (MQ=255)
                                                                                                                                                                                                                                       agGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAACAATTCCCGGTACAGCTGCTGCATTTGATTCCAATCATAAGCAACTAAACTTGCGCATTCCCCAAATTGCACTTTCCCg       >  2:117249/1‑238 (MQ=255)
                                                                                                                                                                                                                                        ggTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTATACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGTTGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATATTCAGCAACTTAATTTGAGACTTCCCCAAATTGCACTGAACCGTg     >  1:567618/1‑239 (MQ=255)
                                                                                                                                                                                                                                           ttCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGCTGACGTTAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAACATTCCCCAAATTGAACTGAACCGTGagg  >  2:30975/1‑237 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                            
CGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGG‑TATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAT‑GCACAACTACCAG‑GA‑ACTTATCAGGTTGATATCT‑GGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACA‑TT‑TACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATG  >  NC_000913/3288844‑3289312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A