Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F108 I2 R1
|
19 |
69.6 |
2506112 |
90.8% |
2275549 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,194,572 |
(T)6→5 |
intergenic (+47/+151) |
yqiK → / ← sibD |
PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,194,567 | 0 | T | . | 96.6%
| 211.6
/ 2.5
| 61 | intergenic (+42/+156) | yqiK/sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); major base . (31/26); minor base A (0/2); total (33/28) |
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
TGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAG > NC_000913/3194426‑3194705
|
tGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAAGAACTCCCGTCGAAGAAAAAGCAGCGTAAACCCTCTTCCAGCACTCATCCCTCGCCCAAAGAGCCGGGGAtt > 2:806838/1‑143 (MQ=255)
aCTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttt > 2:1098230/1‑143 (MQ=255)
ccTTGCGCAATGAAATTGGCGTTGCAGGCGGCTCACTGCCGGCATTGACTTCACCCTTAACCTCAACAACACCCGTCGAATAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGAtttttat < 2:1219140/143‑3 (MQ=255)
cTTGCTCAATGAAATTGGAGTTTAAGGCGGCTCACGCCCGACACTCCATTGAACGTTAGGCTGAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGACGGGGAttggtata > 1:290482/1‑137 (MQ=255)
cTCAATGAAATTGGCGTTTCAGGCGGCTCACCGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTg < 2:512766/143‑1 (MQ=255)
tCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGc > 1:1060944/1‑143 (MQ=255)
aaTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGt > 1:1012328/1‑143 (MQ=255)
aaTGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGt > 1:982137/1‑143 (MQ=255)
gAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTcc > 1:1181560/1‑143 (MQ=255)
gCGTTTCATGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTa‑aaa < 2:314569/143‑1 (MQ=255)
tttCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACCACTCCCGTCGACGGACAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCAGGCCCAAAAAGCCGGCG‑CTCGTGATATCTGCGGTCCGCTC‑AACAGt > 2:460321/1‑143 (MQ=255)
tgtccggcggcTCACGGGCGGCATTGACTTCACCCTTAAACTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGt < 2:180386/138‑1 (MQ=38)
gcTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACGCCCGTCGAAGAAAAACCAGAGTACCCCCTCGTCCAGGAAGAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGAt < 2:1014848/143‑1 (MQ=37)
tCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCa > 2:595369/1‑143 (MQ=255)
tCACTGGCGGCATGGACCTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTTTCCCAGGAATAATCCCGGGCCCAAATAGCCGGCGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCa < 1:82561/143‑1 (MQ=37)
tCACTAGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAAACCCTGGCCCAAAAAGCCGGGGA‑TCTTTATATCTGCGTGTCGCGA‑AAAAGTGCAGAGGAtga > 2:1039352/1‑141 (MQ=255)
cACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAg < 1:1098230/143‑1 (MQ=255)
aCTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAgg < 1:1140489/143‑1 (MQ=255)
tGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCGTCTTCGAGGACTAATCACTGGCCCAAAAAGCCGGGGA‑TTATTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCACgtt > 2:501363/1‑143 (MQ=37)
tGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTAAATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGgtt > 2:377392/1‑143 (MQ=255)
aTTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTgcag > 1:1185136/1‑143 (MQ=255)
aTTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTgcag < 1:934988/143‑1 (MQ=255)
tCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAACCCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTg < 2:960084/143‑1 (MQ=255)
cccTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGt < 2:982137/143‑1 (MQ=255)
ccTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTg > 2:189171/1‑143 (MQ=255)
cTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑GAAAGTGCAATCGATCGGGTTGTTGCAGCATTTTACGTgg > 1:226560/1‑142 (MQ=37)
cTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGACGGGGA‑TCTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGATGTAGCAGCATCTTGCGTGa > 2:1076068/1‑143 (MQ=37)
tCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTGTAGATCTGCGTTCCGCTACAAAATCACAACTG‑TTTTTTGGTGGCAGCATTTTGCGTGACGGcgcg > 1:632803/1‑143 (MQ=19)
aacaacTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGCCGGCTCggg > 1:1809/1‑143 (MQ=255)
agcTCCCGTCGAAGAAACGGCAGAGTAACGCCGCTTCCAGGAATAGTCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGGGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGaa < 2:624379/141‑1 (MQ=21)
acgcccGTCGCAGCCATATCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCACAAAAAGCC‑GGGAATTTGTACATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCGCGGGGAAg < 2:251597/140‑1 (MQ=255)
acTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAg < 2:858411/143‑1 (MQ=255)
tCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCACGGGAGCAGGTTGTTGCAGGATTTTGCGTGGCGGCTCGGGGGAGGc > 2:701926/1‑143 (MQ=25)
tCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGACGAGGA‑TTTTTATATATGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGATGTTGCAGCATTTAGGGTGAAGGCTCGGGGAAgga > 2:1119582/1‑142 (MQ=255)
ccGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAACAAGCCGGGGA‑TTGTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCaa > 1:148286/1‑143 (MQ=255)
ccGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAACGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCaa > 1:87392/1‑143 (MQ=255)
gTCGAAGAAAAAGCAGAGTAAATCCTCTTCCAGGAATAATCCCTGGCCTAAAAAGCCGGAGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCaaaa < 1:13624/143‑1 (MQ=255)
ctgtaagatAAAGCAGAGTACATCCTCTTCTAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAAGGAACAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCaaaa < 2:527526/139‑1 (MQ=18)
aaGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCaga < 2:565108/143‑1 (MQ=255)
aaGCAGAGTAAACCCTCTTCCAGGAATAAGCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCaga < 1:634014/143‑1 (MQ=255)
gTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGACGGCAAAACTGCATCAGCGAAAGCa > 2:5216/1‑143 (MQ=255)
cccTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑AAATTATGACTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCg > 1:237637/1‑143 (MQ=21)
ctctTCCAGGAATAAGCCCTGGCCCAAAAGGTCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTg < 2:566066/143‑1 (MQ=255)
gctatcAGAAATCATCGCTGGCCCAAAACGCCGGGGA‑GTTTGATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTTCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTgg < 2:586650/138‑1 (MQ=18)
ctTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTAAATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTggg < 1:377392/143‑1 (MQ=255)
ttCCAGGAATAATCCCTGGCACAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTgggg < 1:616802/143‑1 (MQ=255)
aGGAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTg > 1:822093/1‑143 (MQ=255)
aGGAATAATCCCTGGCCCAAAAAGCCGGAGA‑TTATTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGACACGGTTGTTGCAGCATCTCGCGAGCAGCCTCGGGGAAGGCCAAACTGCACAAAAGAAACCACTGCGCGAGGACTg > 2:520510/1‑143 (MQ=12)
ggAATAATCCCTGGCCCAAAAAGCCGGGGA‑TGTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTgg < 2:1012328/143‑1 (MQ=255)
gAATAATCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATGTTGCGTGACGCCTCGGGGAAGGGAAAAATAAATGGGGTAAAGCATTGCGTGGGGTCTGgc > 1:780155/1‑143 (MQ=17)
aataatCCCTGGCCCAAGAAGCCGGGTA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGgcg < 1:197640/143‑1 (MQ=255)
aataatCCCTGGCCCAAAAGGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGgcg < 2:730239/143‑1 (MQ=255)
aagactCCCTGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGgcg < 1:992957/138‑1 (MQ=255)
tGGCCCAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCCCATcaac > 1:611645/1‑143 (MQ=255)
ccAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGCTCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCGTTGCGTGGGGTCTGGCGCCGGTCCACAATc > 2:330294/1‑143 (MQ=17)
ccAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATCTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATc > 2:448531/1‑143 (MQ=255)
cAAAAAGCCGGGGATTTTTT‑TATCTTCGTTCCTCCG‑AAAAGCCCGCGTGTTGGGATTGTTGGGGCATGTTGGGGGAGGGCTCGGGGGAGGCAGAACTGTAAGAGAGAAAGCATTACGTGGGGGCTGGGGCACGTCAAAAATCg > 2:818708/1‑143 (MQ=255)
cAAAAAGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGCTCAGGTTGTTGCAGCATTTTGCGTGACGGCACGGGGAAGGCAAAACTGCATGACAGTAATCATTGCGGGGGGTCTGGCGCTCATCAACAATCg > 2:257142/1‑143 (MQ=17)
aaaaaGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCgg < 1:189171/143‑1 (MQ=255)
aaaaaGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTCGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAGTCgg > 1:839293/1‑143 (MQ=255)
aaaaaGCCGGGGA‑TTTTTATATCGGCGTTCCGCTA‑AAAAGTGCAAAGGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCgg < 2:290482/143‑1 (MQ=255)
aaaGCCGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCGAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTGATCAGCAGCCgggg > 1:3182/1‑143 (MQ=18)
aaGCCGGAGAA‑TTTTATGTCTGCGTTCCGCTA‑AAAAGTGCAAACGCTCAGGTTGGTGCAGCATGTTGCGTGACGGCTCGGGGAAGCCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGa < 1:1106773/143‑1 (MQ=18)
ccGGGGA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTc > 2:223942/1‑143 (MQ=255)
ggggA‑TTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGGcag > 1:987779/1‑143 (MQ=255)
|
TGACTCCTTGCTCAATGAAATTGGCGTTTCAGGCGGCTCACTGGCGGCATTGACTTCACCCTTAACCTCAACAACTCCCGTCGAAGAAAAAGCAGAGTAAACCCTCTTCCAGGAATAATCCCTGGCCCAAAAAGCCGGGGATTTTTTATATCTGCGTTCCGCTA‑AAAAGTGCAAATGATCAGGTTGTTGCAGCATTTTGCGTGACGGCTCGGGGAAGGCAAAACTGCATCAGAGAAAGCATTGCGTGGGGTCTGGCGCTCATCAACAATCGGGGAGTCAG > NC_000913/3194426‑3194705
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
