Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A69 F2000 I2 R1 32 130.0 2789900 93.6% 2611346 220.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007779_cfb 987,574 G→T intergenic (‑170/+433) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007779_cfb987,5740GT100.0% 342.7 / NA 107intergenic (‑170/+433)ompF/asnSouter membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (53/54);  total (53/54)

Only 100 of 109 total aligned reads displayed.

TCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTG  >  NC_007779_cfb/987334‑987811
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             
tCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGttt                                                                                                                                                                                                                                      >  1:1018072/1‑250 (MQ=255)
 cTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTc                                                                                                                                                                                                                                     <  2:213260/250‑1 (MQ=255)
  tGCCGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATCAGCTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCa                                                                                                                                                                                                                                    >  2:225802/1‑250 (MQ=255)
        gTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 >  2:114665/1‑247 (MQ=255)
        gTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 <  1:114665/247‑1 (MQ=255)
              aGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAat                                                                                                                                                                                                                        <  1:2692/250‑1 (MQ=255)
                      ctactaACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCCCATGG‑TTTTTTTATGACC‑CCTGCCACTGCCGTCAATAAGTTCTGTCACT‑AAAAATTTACGGAACTATTGATGACAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCa                                                                                                                                                                                                               >  2:16173/1‑250 (MQ=255)
                       tactaACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCa                                                                                                                                                                                                               >  1:914916/1‑250 (MQ=255)
                        accaaCAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCaa                                                                                                                                                                                                              >  2:738319/4‑250 (MQ=255)
                         ctaACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCaaa                                                                                                                                                                                                             >  1:1014095/1‑250 (MQ=255)
                                  cAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAAtt                                                                                                                                                                                                    <  1:1241076/250‑1 (MQ=255)
                                       aCGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAgg                                                                                                                                                                                               <  1:225802/250‑1 (MQ=255)
                                        cGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGa                                                                                                                                                                                              >  1:1274850/1‑250 (MQ=255)
                                         gATCACTGCCAGAATATTGCGCTTCATCATTATTTACTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGaa                                                                                                                                                                                             <  1:1384399/250‑1 (MQ=255)
                                             aCTGCAAGAATATCGCGTTTCATCATTATTTATTACCCTCATTGTTTTTTTTAAGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGATAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACttt                                                                                                                                                                                         <  2:862738/250‑1 (MQ=255)
                                               tGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTtgt                                                                                                                                                                                       >  1:1041200/1‑250 (MQ=255)
                                                gCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTtgtg                                                                                                                                                                                      >  2:381992/1‑250 (MQ=255)
                                                   aGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAac                                                                                                                                                                                   <  1:738319/250‑1 (MQ=255)
                                                        atTGCGCTTCATCATTATTTATTACCCTCATGGTTTCTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTGAGGAACTTTGTGAACACCGt                                                                                                                                                                              >  1:734205/1‑250 (MQ=255)
                                                         ttGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTc                                                                                                                                                                             >  2:1242924/1‑250 (MQ=255)
                                                         atGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAAATTTACGGAACTCTTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGt                                                                                                                                                                              >  2:1040190/2‑250 (MQ=255)
                                                           gcgcTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCACTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 >  2:105101/1‑196 (MQ=255)
                                                           gcgcTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCACTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 <  1:105101/196‑1 (MQ=255)
                                                            cgtttCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGaa                                                                                                                                                                                    <  2:639533/237‑1 (MQ=255)
                                                            cgcTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGaa                                                                                                                                                                                    >  1:639533/1‑240 (MQ=255)
                                                             gcTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCatat                                                                                                                                                                         <  1:1242924/250‑1 (MQ=255)
                                                                     attattTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 >  2:312762/1‑186 (MQ=255)
                                                                     attattTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 <  1:312762/186‑1 (MQ=255)
                                                                     attattTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATag                                                                                                                                                                 <  1:181550/250‑1 (MQ=255)
                                                                              taCCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGATGtgat                                                                                                                                                        <  1:381992/250‑1 (MQ=255)
                                                                                cccTCA‑GGTTTTTTTTAAAGCACCCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGtgatga                                                                                                                                                      <  2:214742/250‑1 (MQ=255)
                                                                                 ccTCATGGTTTTTTTTATGACA‑CCTGCCACTGTCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTgatgat                                                                                                                                                     >  2:848008/1‑250 (MQ=255)
                                                                                   tCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTgatgat                                                                                                                                                     <  1:836653/248‑1 (MQ=255)
                                                                                   tCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTgatgat                                                                                                                                                     >  2:836653/1‑248 (MQ=255)
                                                                                       ggTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAA‑ATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACa                                                                                                                                              <  1:1234714/250‑1 (MQ=255)
                                                                                           ttttttATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCa                                                                                                                                           >  1:305661/1‑250 (MQ=255)
                                                                                            tttttATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTg                                                                                                                                                                                                                                          >  1:334598/1‑154 (MQ=255)
                                                                                            ttgttATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTg                                                                                                                                                                                                                                          <  2:334598/151‑1 (MQ=255)
                                                                                                tATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAATAAAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAAttt                                                                                                                                       <  1:1040190/250‑1 (MQ=255)
                                                                                                tATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCaaaa                                                                                                                                                                                                                                 <  2:583496/159‑1 (MQ=255)
                                                                                                tATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGCTTCaaaa                                                                                                                                                                                                                                 >  1:583496/1‑159 (MQ=255)
                                                                                                 aTGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTa                                                                                                                                     >  2:1003433/1‑250 (MQ=255)
                                                                                                        ctggCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTACAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTAt                                                                                                                               <  2:566607/247‑1 (MQ=255)
                                                                                                         cTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAgaga                                                                                                                                                              >  1:148794/1‑218 (MQ=255)
                                                                                                         cTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAgaga                                                                                                                                                              <  2:148794/218‑1 (MQ=255)
                                                                                                          tGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAg                                                                                                                                                                                                           <  2:637613/172‑1 (MQ=255)
                                                                                                          tGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAg                                                                                                                                                                                                           >  1:637613/1‑172 (MQ=255)
                                                                                                           gCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAg                                                                                                                                                                                                           >  1:793037/1‑171 (MQ=255)
                                                                                                           gCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAg                                                                                                                                                                                                           <  2:793037/171‑1 (MQ=255)
                                                                                                            ccACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTtat                                                                                                                           <  1:1380066/250‑1 (MQ=255)
                                                                                                             cACTGCCGTCAATAAGTTCTTTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTaa                                                                                                                                                                                                                  <  2:538225/162‑1 (MQ=255)
                                                                                                             cACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTaa                                                                                                                                                                                                                  >  1:538225/1‑162 (MQ=255)
                                                                                                                  ccGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAAttt                                                                                                                                                                                                   <  2:443619/172‑1 (MQ=255)
                                                                                                                  ccGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAAttt                                                                                                                                                                                                   >  1:443619/1‑172 (MQ=255)
                                                                                                                     tCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTa                                                                                                                                                                                                         <  1:91214/163‑1 (MQ=255)
                                                                                                                     tCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTa                                                                                                                                                                                                         >  2:91214/1‑163 (MQ=255)
                                                                                                                       aaTAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTa                                                                                                                                                                                                  <  2:1365422/168‑1 (MQ=255)
                                                                                                                       aaTAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTa                                                                                                                                                                                                  >  1:1365422/1‑168 (MQ=255)
                                                                                                                       aaTAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCtt                                                                                                                <  1:1003433/250‑1 (MQ=255)
                                                                                                                         tAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTtat                                                                                                              >  1:21536/1‑250 (MQ=255)
                                                                                                                           aGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGc                                                                                                                                            <  2:823944/218‑1 (MQ=255)
                                                                                                                           aGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGc                                                                                                                                            >  1:823944/1‑218 (MQ=255)
                                                                                                                              tCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTTCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCa                                                                                                                                           >  1:777423/1‑216 (MQ=255)
                                                                                                                                tGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTaaa                                                                                                       >  1:1319705/1‑250 (MQ=255)
                                                                                                                                  tCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAAtt                                                                                                     <  2:1319705/250‑1 (MQ=255)
                                                                                                                                        aaaaaTTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTa                                                                                                <  1:16173/250‑1 (MQ=255)
                                                                                                                                              ttACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGa                                                                                          <  2:914916/250‑1 (MQ=255)
                                                                                                                                               tACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGAt                                                                                                                      >  1:339771/1‑221 (MQ=255)
                                                                                                                                               tACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGAt                                                                                                                      <  2:339771/221‑1 (MQ=255)
                                                                                                                                                 cGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAAt                                                                                       >  2:260513/1‑250 (MQ=255)
                                                                                                                                                   gAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGata                                                                                                                                                    >  2:1179252/1‑187 (MQ=255)
                                                                                                                                                   gAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGata                                                                                                                                                    <  1:1179252/187‑1 (MQ=255)
                                                                                                                                                   gAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAAttg                                                                                     <  2:1041200/250‑2 (MQ=255)
                                                                                                                                                            atgaGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGa                                                                            >  1:1135763/1‑250 (MQ=255)
                                                                                                                                                             tgaGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGAt                                                                           <  1:260513/250‑1 (MQ=255)
                                                                                                                                                                   tttGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTACGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGTAATTTTAATCTATTTATATGATTTCCTTATATTTAAAtt                                                                                                     >  1:142203/1‑218 (MQ=255)
                                                                                                                                                                   tttGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAAtt                                                                                                     <  2:142203/218‑1 (MQ=255)
                                                                                                                                                                   tttGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTCCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAAc                                                                     >  1:392114/1‑250 (MQ=255)
                                                                                                                                                                     tGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGCTAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATAttt                                                                                                                                                                       >  1:698736/1‑150 (MQ=255)
                                                                                                                                                                     tGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATAttt                                                                                                                                                                       <  2:698736/150‑1 (MQ=255)
                                                                                                                                                                             ttATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTtata                                                                                                                          >  1:941101/1‑187 (MQ=255)
                                                                                                                                                                             ttATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTtata                                                                                                                          <  2:941101/187‑1 (MQ=255)
                                                                                                                                                                                 gtgtCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTCCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGc                                                       <  2:392114/250‑1 (MQ=255)
                                                                                                                                                                                   gtCTGCTGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAGAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAAtt                                                                                                     >  2:949057/1‑202 (MQ=255)
                                                                                                                                                                                   gtCTGCTGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAGAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAAtt                                                                                                     <  1:949057/202‑1 (MQ=255)
                                                                                                                                                                                   gtCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCAt                                                                                                                                                                   <  1:354922/140‑1 (MQ=255)
                                                                                                                                                                                       gCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTa                                                                                                                                >  1:923107/1‑171 (MQ=255)
                                                                                                                                                                                       gCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTa                                                                                                                                <  2:923107/171‑1 (MQ=255)
                                                                                                                                                                                        cAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCa                                                                                                                                                                    >  2:1257785/1‑134 (MQ=255)
                                                                                                                                                                                         aGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTa                                                                                                <  2:298222/201‑1 (MQ=255)
                                                                                                                                                                                         aGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTa                                                                                                >  1:298222/1‑201 (MQ=255)
                                                                                                                                                                                          ggCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTGTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAACAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAAtct                                              >  1:963636/1‑250 (MQ=255)
                                                                                                                                                                                            cATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAAtcttc                                            <  2:240228/250‑1 (MQ=255)
                                                                                                                                                                                             aTCTTTCCATTCAAACTAACGCTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGAAACTTTGGGAACACCGTCATATTTCCATAGAGCCGCGATGAAATTTACAGAAATTTTAATCTATTAATATGATTTCCTTATATTTAACTTAAATAAACGTAAATTTTGTTTCTGATGGAAACTTTATCGACATGGAACAAAAtcttct                                           >  2:561881/1‑250 (MQ=255)
                                                                                                                                                                                                  tCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAg                                      >  2:1283857/1‑250 (MQ=255)
                                                                                                                                                                                                        cAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAGACATcc                                <  2:305661/250‑1 (MQ=255)
                                                                                                                                                                                                                  tttCGCTACCGTGAAAGTGCTACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAGACATCCAGAATGCCaa                      <  2:1135763/250‑1 (MQ=255)
                                                                                                                                                                                                                                      tACAAAGATAAATATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATtgtg  >  2:24337/1‑250 (MQ=255)
                                                                                                                                                                                                                                         aaagataaatatTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATc                                                                                                                                  <  1:933779/119‑1 (MQ=255)
                                                                                                                                                                                                                                         aaagataaatatTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATc                                                                                                                                  >  2:933779/1‑119 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                             
TCTGCAGCGTTTGCAGTACCTGCTACTAACAGAGCAGGGACGATCACTGCCAGAATATTGCGCTTCATCATTATTTATTACCCTCATGGTTTTTTTTATGACA‑CCTGCCACTGCCGTCAATAAGTTCTGTCAAT‑AAAAATTTACGGAACTATTGATGAGAGTTTGGTGTCTTTATGTGTCTGCAGGCATCTTTCCATTCAAACTAACGTTTCGCTACCGTGAAAGTGCTACAAAGATAAAGATTTGGTTTCAAAAAGAAAAAATATGTAACCAAAAGTAAAATTTAAGGAACTTTGTGAACACCGTCATATTTCCATAGAGACGTGATGATATTTACAGCAATTTTAATCTATTTATATGATTTCCTTATATTTAAATTAACTAAACGGAAATTTTGTTTCTGATGGAAACTTTATCGACCTGGCACAAAATCTTCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTG  >  NC_007779_cfb/987334‑987811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A