Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A71 F2000 I1 R1 29 128.1 2814310 92.8% 2611679 217.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779_cfb 2,176,983 Δ1,199 bp insH_11 insH_11

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779_cfb 2176983 2178181 1199 127 [0] [0] 127 insH_11 insH_11

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779_cfb = 21769820 (0.000)121 (1.020) 104/424 0.2 100% intergenic (‑281/‑69) gatB/insH_11 PTS system galactitol‑specific transportersubunit IIB/IS5 element protein
?NC_007779_cfb 2178182 = 0 (0.000)intergenic (+151/+211) insH_11/gatZ IS5 element protein/D‑tagatose 1,6‑bisphosphate aldolase 2, subunit

GATK/CNVnator alignment

N/A