Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
3,938,587 |
+TGC |
coding (220/546 nt) |
yiePs ← |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3938584 | 3 (0.020) | 137 (0.900)
+TGC |
82/138 |
0.2 |
97.9% |
coding (223/546 nt) |
yiePs |
hypothetical protein |
| ? | NC_000913 |
3938585 = |
3 (0.020) | coding (222/546 nt) |
yiePs |
hypothetical protein |
Only 100 of 152 total aligned reads displayed.
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3938510‑3938584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTC > NC_000913/3938585‑3938659
|||
acAGTTCTCTTTTCATGCCGCCATTTCGGCCATTAACGTATTGAGATGCTCTTTCTGTTCCGCGGTGCCAACCGTT < 1:3282915/74‑1
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTT < 1:5817227/76‑1
AAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTG < 1:4986679/76‑1
AGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGC < 2:5814781/76‑1
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCT > 2:2283514/1‑76
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCT < 2:2689512/76‑1
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCT < 2:4364880/76‑1
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCT < 1:3049085/76‑1
TCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC > 2:5850068/1‑76
CTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAG > 1:2484903/1‑76
TTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGT < 1:4149360/76‑1
TTTTAATGCCGCCAGTGCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGT < 2:445484/76‑1
TTTTAATGCCGCCACTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGT > 1:2826935/1‑76
TTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTA > 1:4327641/1‑76
TTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAG > 2:1620051/1‑76
TTAATGCCGCCATGTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAG < 2:4508700/76‑1
TAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGG > 1:4437201/1‑76
AATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGC > 2:143354/1‑76
ATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCA < 1:3236144/76‑1
TGCCGCCATTTCGGCCTTTAACGTATTGAGATGGGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAG < 2:5386864/76‑1
GCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGG > 2:4632936/1‑76
CCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTGCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGg < 2:1243423/76‑2
CGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCT > 2:1673966/1‑76
CGCCATTTCGGCCATTAACGTATTGAGATGCGATTTCTGTTCCGCGGTGCCAACCGTTGATGCCAGTAGGCAGGCT > 1:5619521/1‑76
GCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTT < 1:2094078/76‑1
GCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTT > 1:5281721/1‑76
GCCATTGCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTT < 1:4820300/76‑1
CCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGATGCCAACCGTTGCTGCCAGTAGGCAGGCTTG > 2:1925074/1‑76
CATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGC < 1:3603027/76‑1
ATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCG < 1:5207696/76‑1
ATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCG < 1:3366652/76‑1
TTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGG < 2:2092778/76‑1
TTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGC > 1:5195987/1‑76
CGGCCATTAACGTATTGAGAGGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGACAGTATGCAGGTGTGCGGgta > 1:4347937/1‑73
CGGCCATCAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTC < 1:4714697/76‑1
gctATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCCGGCTTGCGGCTCCA < 1:2584902/73‑1
GCCATTAGCGTATTGTGCTGCGCTTTCTGTTCCGCGGTGCCCACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCA < 1:277549/76‑1
GCCATTAACGTATTGAGATGCGCTTTCTGTTCCTCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCA < 1:3353726/76‑1
GCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCA > 2:4893944/1‑76
CCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCTTTGCTGCCAGTAGGCAGGCTTGCGGCCCCca > 2:464868/1‑74
agTAACGTATTGAGAGGCGCTTTCGTTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGAC < 1:3310278/74‑1
ATTACCGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGAC < 1:301519/76‑1
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGAC > 1:3799476/1‑76
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGAC < 1:3276424/76‑1
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTACCAACCGTTGCTGCCAGTAGGCAGGCCTTCCGCTCCAGgc > 2:4915517/1‑74
TTAACGTATTGATATTCGCTTTCTGTTCCGCGGTGCCCACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACA < 1:1280702/76‑1
acCGTATGGAGATGCGCTTTCTTTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGA < 1:1880007/74‑1
acCGTATGGAGATGCGCTTTCTGTCCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGA < 1:2698226/74‑1
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGAT < 1:3043737/76‑1
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTCCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGAT < 1:1572801/76‑1
CGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCCGACAGATA > 2:4374963/1‑76
CGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATA > 1:3597474/1‑76
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACCGGTACG > 2:1001873/1‑76
TTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATAAGCA > 1:573406/1‑76
AGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAA < 1:5541129/76‑1
GCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAG > 2:293184/1‑76
GCTTTCTGTCCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAA < 2:2494517/76‑1
TTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAG > 1:1995382/1‑76
TTCTATTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGc > 2:2571493/1‑75
TCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTG > 2:1806578/1‑76
TGTTCCGCGGTGCCACCCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT < 2:3209918/76‑1
gtcCCGCGGTGCAACCCGTTCCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < 1:5393038/73‑1
GTTCCGCGTTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < 1:1394469/76‑1
GTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATa < 2:4819450/76‑2
tcCCGCGGTGCCACCCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCG < 1:1050318/74‑1
TTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCG > 1:4560811/1‑76
TTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCG < 1:3936194/76‑1
TCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGA > 1:4975484/1‑76
TCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGA < 1:4683941/76‑1
CCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGct > 2:2130611/1‑74
CCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGAT > 2:2654264/1‑76
CGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATG > 1:2775962/1‑76
CGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATG > 1:5615850/1‑76
CGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATG < 1:1590338/76‑1
GCGGTGCCAACCGTGGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < 2:4042824/76‑1
GGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACC > 2:3184935/1‑76
GGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACC > 2:5454982/1‑76
GGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACC < 2:1042582/76‑1
GTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATGCGCATAACCAGAAAGTGATCGATGACCT < 2:3987412/76‑1
gGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTG < 1:4860922/75‑1
gGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTG < 2:4126739/75‑1
GCCAGCCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA < 1:2120062/76‑1
CCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGAT < 1:5753170/76‑1
cacCCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATG < 1:5850069/73‑1
AACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGA > 1:1024461/1‑76
AACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGA > 2:3124160/1‑76
CCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAA < 2:3799475/76‑1
CCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAA < 1:268667/76‑1
CCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAA < 2:2334023/76‑1
CGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAG < 1:5275945/76‑1
CGTGGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAG < 2:1317181/76‑1
GTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCCTAACCAGAAAGTGATCGATGCCCTGCTGAACGT > 2:5760059/1‑76
GTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGT > 1:4007335/1‑76
GTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGT < 1:5470567/76‑1
GTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGAATAACCAGAAAGAGATAGATGACCTGATGAAAGT > 1:2911495/1‑76
gTGCTGCCAGTAGTCAGGCTTGCGGCTTCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTT < 2:1395133/75‑1
gGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTC < 2:4251941/75‑1
GCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCT < 2:3822065/76‑1
GCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCT < 2:4851228/76‑1
CTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGCAAGTTCTC > 2:2529775/1‑76
|||
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3938510‑3938584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTC > NC_000913/3938585‑3938659
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
