Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,031,991 |
Δ1 bp |
coding (327/1419 nt) |
dcm ← |
DNA cytosine methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,031,991 | 0 | C | . | 100.0%
| 278.9
/ NA
| 66 | coding (327/1419 nt) | dcm | DNA cytosine methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (36/30); total (36/30) |
CACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCGAACTCTTTCT > NC_000913/2031862‑2032124
|
cacGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCaa > 2:595159/1‑139 (MQ=255)
gCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCg > 2:307559/1‑139 (MQ=255)
gCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCg > 2:1354026/1‑139 (MQ=255)
tcttTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTc > 2:256039/1‑139 (MQ=255)
ggTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGa > 2:751055/1‑139 (MQ=255)
gcgGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCaa < 2:312919/139‑1 (MQ=255)
cgGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAAt > 2:629846/1‑139 (MQ=255)
tCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGc > 1:1402181/1‑139 (MQ=255)
cTTCATTAAAATGATGCGTCGCTGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGACg < 1:629846/139‑1 (MQ=255)
cTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCg < 2:1402181/139‑1 (MQ=255)
cTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCg < 1:1354026/139‑1 (MQ=255)
tCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGaa > 1:44833/1‑139 (MQ=255)
aTTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATa > 2:87898/1‑139 (MQ=255)
tgatgCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGAt > 2:369096/1‑139 (MQ=255)
atgCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATaa > 2:399147/1‑139 (MQ=255)
ccGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCg < 1:1191899/115‑1 (MQ=255)
ccGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCg > 2:1191899/1‑115 (MQ=255)
cGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACg < 1:307559/139‑1 (MQ=255)
aTCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCAt > 1:768549/1‑139 (MQ=255)
aTCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCAt < 1:751055/139‑1 (MQ=255)
ataatGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCg < 2:480446/139‑1 (MQ=255)
aatGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGga < 2:1263162/139‑1 (MQ=255)
gTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGgatgat > 1:1071527/1‑139 (MQ=255)
ggCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGAtgtg > 1:989455/1‑139 (MQ=255)
tGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAg > 1:609609/1‑93 (MQ=255)
tGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAg < 2:609609/93‑1 (MQ=255)
gCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCa > 2:1349363/1‑111 (MQ=255)
gCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCa < 1:1349363/111‑1 (MQ=255)
gCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTgg > 2:68276/1‑139 (MQ=255)
gCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTgg > 1:47008/1‑139 (MQ=255)
tACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGa < 1:674942/63‑1 (MQ=255)
tACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGa > 2:674942/1‑63 (MQ=255)
tACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCg < 1:771796/81‑1 (MQ=255)
tACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCg > 2:771796/1‑81 (MQ=255)
tACCGCATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGta < 1:1137115/139‑1 (MQ=255)
cATGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAAc > 1:678151/1‑139 (MQ=255)
aTGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCa < 1:540237/102‑1 (MQ=255)
aTGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCa > 2:540237/1‑102 (MQ=255)
aTGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt < 2:157552/126‑1 (MQ=255)
aTGTTTGTTCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt > 1:157552/1‑126 (MQ=255)
gtttgttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCaa > 1:4695/1‑68 (MQ=255)
gtttgttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCaa < 2:4695/68‑1 (MQ=255)
tgttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt < 2:537351/121‑1 (MQ=255)
tgttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt > 1:537351/1‑121 (MQ=255)
tgttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGc > 2:60533/1‑139 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCaaaa < 1:916872/44‑1 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCaaaa > 2:916872/1‑44 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGAt < 2:1457888/78‑1 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGAt > 1:1457888/1‑78 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGtaata < 1:834687/129‑1 (MQ=255)
ttCCATTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGtaata > 2:834687/1‑129 (MQ=255)
aTTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt < 2:110072/115‑1 (MQ=255)
aTTCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCggtggt > 1:110072/1‑115 (MQ=255)
ttCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGtaat < 2:1081085/123‑1 (MQ=255)
ttCGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGtaat > 1:1081085/1‑123 (MQ=255)
cGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCg < 2:768549/139‑1 (MQ=255)
cGCTGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCg < 1:256039/139‑1 (MQ=255)
tGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGTCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCg > 1:689154/1‑92 (MQ=255)
tGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCg < 2:689154/92‑1 (MQ=255)
tGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCg < 2:435929/136‑1 (MQ=255)
tGGTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCg > 1:435929/1‑136 (MQ=255)
ggTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAg > 2:16549/1‑65 (MQ=255)
ggTAAACACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAg < 1:16549/65‑1 (MQ=255)
aaCACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGa < 2:428724/74‑1 (MQ=255)
aaCACGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGa > 1:428724/1‑74 (MQ=255)
cacGCA‑TGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCGAACTCTTtct < 1:68276/139‑1 (MQ=255)
|
CACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAAGCGAAACGCATAATGCGGATGATGTGCCGGTGGTTTGGGTAATAACGTTTGCAGATGGGCGAACTCTTTCT > NC_000913/2031862‑2032124
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
