Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,467,831 |
T→C |
intergenic (+129/‑24) |
intS → / → gtrA |
CPS‑53 (KpLE1) prophage, putative prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage, bactoprenol‑linked glucose translocase/flippase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,467,831 | 0 | T | C | 100.0%
| 199.4
/ NA
| 55 | intergenic (+129/‑24) | intS/gtrA | CPS‑53 (KpLE1) prophage, putative prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage, bactoprenol‑linked glucose translocase/flippase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/29); total (26/29) |
CGACCTTAACAACTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATCTATGTCGCGCATACAAACCAAGCTCTT > NC_000913/2467704‑2467962
|
cGACCTTAACAACTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAg < 1:818127/139‑1 (MQ=255)
acTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATagaaga < 2:1473567/139‑1 (MQ=255)
aaTAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTa < 2:1454703/139‑1 (MQ=255)
tAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTaaa < 2:1335903/139‑1 (MQ=255)
gCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGc > 1:980970/1‑139 (MQ=255)
tGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAg > 2:510770/1‑139 (MQ=255)
aaTCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCGTTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTac < 1:178402/139‑1 (MQ=255)
cAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGatt > 2:288156/1‑94 (MQ=255)
cAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGatt < 1:288156/94‑1 (MQ=255)
gTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACctct > 1:1431207/1‑139 (MQ=255)
aGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCa < 1:986851/121‑1 (MQ=255)
aGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGAATAAGACTTGGATGATAGACTTCATACCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCa > 2:986851/1‑121 (MQ=255)
tgtgtgTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGc < 2:902379/87‑1 (MQ=255)
tgtgtgTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGc > 1:902379/1‑87 (MQ=255)
tgtgtgTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTacac > 2:781444/1‑124 (MQ=255)
tgtgtgTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTacac < 1:781444/124‑1 (MQ=255)
tgtgtgTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCt > 2:1125616/1‑139 (MQ=255)
gtgtATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 1:405143/139‑1 (MQ=255)
gtgtATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 1:510770/139‑1 (MQ=255)
gtgtATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 1:605254/139‑1 (MQ=255)
gtgtATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 2:980970/139‑1 (MQ=255)
gtATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAaca < 2:887630/139‑1 (MQ=255)
gTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGGAGAAATGTTAAAGCTATTTGCAAAGTac < 2:998861/106‑1 (MQ=255)
gTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTac > 1:998861/1‑106 (MQ=255)
gTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATacac > 2:1281469/1‑139 (MQ=255)
gTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATacac > 2:432890/1‑139 (MQ=255)
atcaACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGggt < 2:1431207/139‑1 (MQ=255)
tcaACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTg < 1:678258/110‑1 (MQ=255)
tcaACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTg > 2:678258/1‑110 (MQ=255)
aGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGtt < 2:923922/139‑1 (MQ=255)
atcgatcgATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATagaaga < 1:971688/60‑1 (MQ=255)
atcgatcgATTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATagaaga > 2:971688/1‑60 (MQ=255)
gatcgatTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATc > 2:1269386/1‑139 (MQ=255)
gatcgatTAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATc > 2:43993/1‑139 (MQ=255)
atcgatTAAGACTTGGATGATAGACTTCGTTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa > 1:358992/1‑101 (MQ=255)
atcgatTAAGACTTGGATGATAGACTTCGTTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 2:358992/101‑1 (MQ=255)
ttAAGACTTGGATGATAGGCTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGggt < 1:1046769/114‑1 (MQ=255)
ttAAGACTGGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGggt > 2:1046769/1‑114 (MQ=255)
tAAGACTTGGATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATCTATGTcg < 1:432890/139‑1 (MQ=255)
ggATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCa < 2:77096/61‑1 (MQ=255)
ggATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCa > 1:77096/1‑61 (MQ=255)
ggATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTAt < 2:702749/75‑1 (MQ=255)
ggATGATAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTAt > 1:702749/1‑75 (MQ=255)
gatgatAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGtt > 2:279480/1‑108 (MQ=255)
gatgatAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGtt < 1:279480/108‑1 (MQ=255)
gatgatAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGtt > 2:615846/1‑117 (MQ=255)
gatgatAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGtt < 1:615846/117‑1 (MQ=255)
tAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa < 1:370321/81‑1 (MQ=255)
tAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGaa > 2:370321/1‑81 (MQ=255)
tAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGtt < 2:1477332/112‑1 (MQ=255)
tAGACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGtt > 1:1477332/1‑112 (MQ=255)
gACTTCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATCTATGTCGCGCATACAAACCAAGc > 1:447905/1‑139 (MQ=255)
ttCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGt > 2:151299/1‑54 (MQ=255)
ttCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGt < 1:151299/54‑1 (MQ=255)
tCATTCCCTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATCTATGTCGCGCATACAAACCAAGCTCtt > 2:33622/1‑139 (MQ=255)
|
CGACCTTAACAACTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTGCAAAGTACACCTCTATTGGTGTGCTGAACACCCTTATACACTGGGTGGTTTTTGGTGTTTGTATCTATGTCGCGCATACAAACCAAGCTCTT > NC_000913/2467704‑2467962
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
