Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	766	64.2	3232166	90.9%	2938038	104.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,158,637	C→T	R50W (CGG→TGG)	oxyR →	oxidative and nitrosative stress transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,158,637	0	C	T	100.0%	248.7 / NA	76	R50W (CGG→TGG)	oxyR	oxidative and nitrosative stress transcriptional regulator
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (33/43); total (33/43)

GATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCT  >  NC_000913/4158502‑4158767

gATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGa                                                                                                                                 >  1:895614/1‑139 (MQ=255)

 aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGAc                                                                                                                                <  2:1597616/139‑1 (MQ=255)

 aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGAc                                                                                                                                <  2:1114851/139‑1 (MQ=255)

         tACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTa                                                                                                                        <  1:1408968/139‑1 (MQ=255)

              ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAgtg                                                                                                                   >  2:904165/1‑139 (MQ=255)

              ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAgtg                                                                                                                   >  2:852204/1‑139 (MQ=255)

              ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAgtg                                                                                                                   >  2:1150891/1‑139 (MQ=255)

                   cATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGAGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTgttgtt                                                                                                              >  1:1261771/1‑139 (MQ=255)

                      tGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCAc                                                                                                           <  1:1108404/139‑1 (MQ=255)

                      tGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCAc                                                                                                           >  2:1108404/1‑139 (MQ=255)

                       ggCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCAcc                                                                                                          <  1:494419/139‑1 (MQ=255)

                       ggCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCAcc                                                                                                          <  1:1045831/139‑1 (MQ=255)

                            aaCACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGc                                                                                                     >  1:712355/1‑139 (MQ=255)

                                 cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGaa                                                                                                >  2:1367727/1‑139 (MQ=255)

                                  gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAt                                                                                               >  2:1314390/1‑139 (MQ=255)

                                   ccATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              <  1:343169/139‑1 (MQ=255)

                                   ccATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              <  1:315436/139‑1 (MQ=255)

                                        ttCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATgctgct                                                                                         >  2:1249569/1‑139 (MQ=255)

                                               tGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  <  2:1098260/139‑1 (MQ=255)

                                               tGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  <  2:193187/139‑1 (MQ=255)

                                                gCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATc                                                                                 >  2:282883/1‑139 (MQ=255)

                                                       aTTCCTGCCACGTTAGCCAGCCGACGCTTAGCGAGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGcgcg                                                                          <  2:1261771/139‑1 (MQ=255)

                                                         tCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTc                                                                                                             <  1:1486334/102‑1 (MQ=255)

                                                         tCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTc                                                                                                             >  2:1486334/1‑102 (MQ=255)

                                                             gCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGt                                                                    <  1:192992/139‑1 (MQ=255)

                                                              ccACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGtg                                                                   <  1:1203126/139‑1 (MQ=255)

                                                               cACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAg                                                                                                                             >  2:32000/1‑80 (MQ=255)

                                                               cACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAg                                                                                                                             <  1:32000/80‑1 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAGGTGTTGTTCACCAAGGGGGGATTGCTGTGGGGGGATCAGGGGGGTACGGTGCTGGGTGAGGGGa                                                      >  2:102318/1‑139 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGtgtt                                                                                                                 >  2:288646/1‑80 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGtgtt                                                                                                                 <  1:288646/80‑1 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGt                                                                         >  1:213262/1‑120 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGt                                                                         <  2:213262/120‑1 (MQ=255)

                                                                           ccGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGa                                                      >  1:270326/1‑139 (MQ=255)

                                                                            cGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  >  2:783637/1‑110 (MQ=255)

                                                                            cGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  <  1:783637/110‑1 (MQ=255)

                                                                            cGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGaa                                                     <  1:282883/139‑1 (MQ=255)

                                                                            cGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGaa                                                     <  2:712355/139‑1 (MQ=255)

                                                                            cGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGaa                                                     <  1:904165/139‑1 (MQ=255)

                                                                              aCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAg                                                   <  1:1265384/139‑1 (MQ=255)

                                                                              aCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAg                                                   <  1:1314390/139‑1 (MQ=255)

                                                                              aCGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAg                                                   <  2:812657/139‑1 (MQ=255)

                                                                                     gCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGa                                                                                                                                 >  1:1348758/1‑54 (MQ=255)

                                                                                     gCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGa                                                                                                                                 <  2:1348758/54‑1 (MQ=255)

                                                                                           aaaTTTGTAAGCTTGAAGATGAGCCGGGGCGGGTGGTGGTGGAGGGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGAt                                      <  1:102318/139‑1 (MQ=255)

                                                                                                   aaGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGcc                              >  1:436187/1‑139 (MQ=255)

                                                                                                         gAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              <  2:62414/69‑1 (MQ=255)

                                                                                                         gAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              >  1:62414/1‑69 (MQ=255)

                                                                                                         gAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAgg                        >  1:630673/1‑139 (MQ=255)

                                                                                                         gAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAgg                        >  2:634040/1‑139 (MQ=255)

                                                                                                         gAAGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAgg                        >  1:1466317/1‑139 (MQ=255)

                                                                                                          aaGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  <  2:184849/80‑1 (MQ=255)

                                                                                                          aaGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  >  1:184849/1‑80 (MQ=255)

                                                                                                           aGATGAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGc                      <  2:630673/139‑1 (MQ=255)

                                                                                                               gAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  >  2:1029611/1‑75 (MQ=255)

                                                                                                               gAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                                                                                  <  1:1029611/75‑1 (MQ=255)

                                                                                                               gAGCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCgaga                  <  2:895614/139‑1 (MQ=255)

                                                                                                                 gCTGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACg                <  2:660029/139‑1 (MQ=255)

                                                                                                                   tGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTAc                                                                       >  2:1073176/1‑82 (MQ=255)

                                                                                                                   tGGGCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTAc                                                                       <  1:1073176/82‑1 (MQ=255)

                                                                                                                    gggCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTa                                             <  1:566079/107‑1 (MQ=255)

                                                                                                                    gggCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTa                                             >  2:566079/1‑107 (MQ=255)

                                                                                                                     ggCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              <  1:1004223/57‑1 (MQ=255)

                                                                                                                     ggCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                                                                              >  2:1004223/1‑57 (MQ=255)

                                                                                                                     ggCGTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGt            >  2:459333/1‑139 (MQ=255)

                                                                                                                        gTGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCg         <  2:897453/139‑1 (MQ=255)

                                                                                                                         tGATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCgg        <  1:1150891/139‑1 (MQ=255)

                                                                                                                          gATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGa       <  1:1230015/139‑1 (MQ=255)

                                                                                                                          gATGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGACCAGGCGCGTAACGTGCTGCGTGAGGTGAAAGTCCTTACAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGa       >  1:438114/1‑139 (MQ=255)

                                                                                                                            tGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTa                                                                        <  2:1592441/72‑1 (MQ=255)

                                                                                                                            tGTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTa                                                                        >  1:1592441/1‑72 (MQ=255)

                                                                                                                            tGTTGCTAGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTa                                                                        <  2:1509109/72‑1 (MQ=255)

                                                                                                                            tGTTGCTAGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTa                                                                        >  1:1509109/1‑72 (MQ=255)

                                                                                                                             gTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGATGATGTCCGGACCg    <  1:852204/139‑1 (MQ=255)

                                                                                                                             gTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCg    <  2:270326/139‑1 (MQ=255)

                                                                                                                             gTTGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCg    <  1:634040/139‑1 (MQ=255)

                                                                                                                               tGCTGGAGTGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCt  <  1:459333/139‑1 (MQ=255)

GATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCT  >  NC_000913/4158502‑4158767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A