Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I2 R1 766 64.2 3232166 90.9% 2938038 104.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,510,188 A→G intergenic (+55/+502) yjhV → / ← fecE pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,510,1880AG100.0% 269.5 / NA 76intergenic (+55/+502)yjhV/fecEpseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/34);  total (42/34)

CTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACACTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGCTCCGTG  >  NC_000913/4510058‑4510320
                                                                                                                                  |                                                                                                                                     
cTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAg                                                                                                                               >  2:1377019/1‑139 (MQ=255)
             ggTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGt                                                                                                                  <  2:976025/139‑1 (MQ=255)
                       cGACTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTgg                                                                                                        >  2:571728/1‑139 (MQ=255)
                         aCTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGAt                                                                                                      >  1:1470489/1‑139 (MQ=255)
                             aTGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGc                                                                                                  >  1:213099/1‑139 (MQ=255)
                              tGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCa                                                                                                 <  2:213099/139‑1 (MQ=255)
                               gAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGa                                                                                                              >  1:608529/1‑125 (MQ=255)
                               gAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGa                                                                                                              <  2:608529/125‑1 (MQ=255)
                                       cATTGATAACAATCGATCCATTAATTGGCCTGTTTAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGTAATT‑CCGTTc                                                                                       >  1:390989/1‑139 (MQ=255)
                                            aTAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATgg                                                                                  >  1:1288890/1‑139 (MQ=255)
                                            aTAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATgg                                                                                  >  1:1409461/1‑139 (MQ=255)
                                             tAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGa                                                                                                                              >  2:1424639/1‑95 (MQ=255)
                                             tAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGa                                                                                                                              <  1:1424639/95‑1 (MQ=255)
                                             tAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGt                                                                                 <  2:841251/139‑1 (MQ=255)
                                              aaCAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGtt                                                                                >  2:596084/1‑139 (MQ=255)
                                                cAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGc                                                                              <  2:1470489/139‑1 (MQ=255)
                                                 aaTCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCt                                                                             <  1:1377019/139‑1 (MQ=255)
                                                      aTCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGa                                                                                                                      <  1:811381/94‑1 (MQ=255)
                                                      aTCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGa                                                                                                                      >  2:811381/1‑94 (MQ=255)
                                                       tCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGAt                                                                       <  2:828831/139‑1 (MQ=255)
                                                           tCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTAc                                                                   >  1:329970/1‑139 (MQ=255)
                                                                  gCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCg                                                            >  1:666002/1‑139 (MQ=255)
                                                                    cTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTc                                                          <  2:666002/139‑1 (MQ=255)
                                                                     tGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCt                                                         >  1:804177/1‑139 (MQ=255)
                                                                       tataACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGaa                                                                                                             >  2:532442/1‑86 (MQ=255)
                                                                       tataACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGaa                                                                                                             <  1:532442/86‑1 (MQ=255)
                                                                          aaCGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCa                                                    <  2:1541648/139‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGc                                                                                                  <  1:277361/87‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGc                                                                                                  >  2:277361/1‑87 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAAtt                                                                                              >  2:708415/1‑91 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAAtt                                                                                              <  1:708415/91‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCt                                                                             <  1:996148/107‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCt                                                                             >  2:996148/1‑107 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGAt                                                                       >  2:1159991/1‑113 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGAt                                                                       <  1:1159991/113‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTgg                                                              >  1:239995/1‑122 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTgg                                                              <  2:239995/122‑1 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAttt                                             >  2:1228546/1‑139 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAttt                                             >  1:809913/1‑139 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAttt                                             >  2:1577517/1‑139 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAttt                                             >  1:1270661/1‑139 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACAGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGtt                                                                >  2:363960/1‑120 (MQ=255)
                                                                                 cTGCCGGTGATTAAGAAAGCTGCACCTACCTAACTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGtt                                                                <  1:363960/120‑1 (MQ=255)
                                                                                        tGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCa                                      <  2:809913/139‑1 (MQ=255)
                                                                                        tGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCa                                      <  1:571728/139‑1 (MQ=255)
                                                                                        tGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCa                                      <  2:1409461/139‑1 (MQ=255)
                                                                                               gAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGccc                               <  2:329970/139‑1 (MQ=255)
                                                                                                  aGCTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAAc                            <  1:596084/139‑1 (MQ=255)
                                                                                                    cTGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCt                          >  2:1559349/1‑139 (MQ=255)
                                                                                                     tGCACCTACCTAAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTc                         >  1:468406/1‑139 (MQ=255)
                                                                                                             cctaAGTAGTAGCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTaa                 <  2:468406/139‑1 (MQ=255)
                                                                                                                   tagtagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGtt                                                                >  2:316779/1‑86 (MQ=255)
                                                                                                                   tagtagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGtt                                                                <  1:316779/86‑1 (MQ=255)
                                                                                                                     gtagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAg         >  1:1410420/1‑139 (MQ=255)
                                                                                                                     gtagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAg         <  2:804177/139‑1 (MQ=255)
                                                                                                                     gtagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAg         >  1:1491981/1‑139 (MQ=255)
                                                                                                                      tagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAt                                               >  2:282824/1‑100 (MQ=255)
                                                                                                                      tagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAt                                               <  1:282824/100‑1 (MQ=255)
                                                                                                                      tagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAAc            >  2:1532051/1‑135 (MQ=255)
                                                                                                                      tagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAAc            <  1:1532051/135‑1 (MQ=255)
                                                                                                                      tagCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGc        >  2:1429671/1‑139 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATTCCCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGc        >  2:526560/1‑139 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACg                                                                  >  2:296267/1‑80 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACg                                                                  <  1:296267/80‑1 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGAt                                                      >  1:1210300/1‑92 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGAt                                                      <  2:1210300/92‑1 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAt                                               <  2:152921/99‑1 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGAt                                               >  1:152921/1‑99 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCa                                      >  2:1037766/1‑108 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCa                                      <  1:1037766/108‑1 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCAtt                      <  2:479831/124‑1 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCAtt                      >  1:479831/1‑124 (MQ=255)
                                                                                                                       agCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGCt       >  2:90871/1‑139 (MQ=255)
                                                                                                                        gCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑c                                                                                            <  2:905009/53‑1 (MQ=255)
                                                                                                                        gCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑c                                                                                            >  1:905009/1‑53 (MQ=255)
                                                                                                                        gCAAACGCACGCTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGCTc      >  2:65159/1‑139 (MQ=255)
                                                                                                                            acgcacgcTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGCTCCGTg  >  2:1276584/1‑139 (MQ=255)
                                                                                                                                  |                                                                                                                                     
CTTCGGTAAGCTGGGTGAGACACCGACTCATGAAGATATCATTGATAACAATCGATCCATCAACTGGCCTGTATAACGTGGCTGCCGGTGATTAAGAAAGCTGCACCTACCTAAGTAGTAGCAAACGCACACTTTTTAGAAAAATCGATGGTCAGAAACTGGATTAGCAATT‑CCGTTCCATGGTTGCTTTTGATTTACGTTGGCGTCTGATCATTGATTTATCCTCAAAAGCCCAACCTCATTGGTAATGAACCAGCTCCGTG  >  NC_000913/4510058‑4510320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A