Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,471,767 |
(C)5→6 |
pseudogene (356/579 nt) |
yfdL ← |
pseudogene, CPS‑53 (KpLE1) prophage,Phage or Prophage Related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,471,762 | 1 | . | C | 100.0%
| 103.5
/ NA
| 31 | pseudogene (361/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (17/14); total (17/14) |
CCGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑CCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGC > NC_000913/2471626‑2471882
|
ccGGCACAAGCTATATAGTCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc < 1:722025/139‑1 (MQ=255)
ccAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTaaa > 2:138904/1‑139 (MQ=255)
cAACATTTGTACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAAc > 1:743190/1‑139 (MQ=255)
aaCATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAAcc > 1:1022127/1‑139 (MQ=255)
aTTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCTGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGa > 2:627689/1‑125 (MQ=255)
aTTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGa < 1:627689/125‑1 (MQ=255)
tGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATgg > 2:525727/1‑139 (MQ=255)
ccGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAAtttt > 1:23538/1‑139 (MQ=255)
tgtAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATc > 1:251754/1‑139 (MQ=255)
aGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGa > 2:99586/1‑139 (MQ=255)
aaaTACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGa < 1:901873/139‑1 (MQ=255)
aGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATaaaa < 2:1022127/139‑1 (MQ=255)
aGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACCGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATaaaa < 2:713802/139‑1 (MQ=255)
aTCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTAc > 2:1068912/1‑139 (MQ=255)
tCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTAcc < 2:251754/139‑1 (MQ=255)
ttCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCata < 1:525727/139‑1 (MQ=255)
ttCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc > 1:889408/1‑64 (MQ=255)
ttCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc < 2:889408/64‑1 (MQ=255)
tGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc < 1:899890/56‑1 (MQ=255)
tGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cc > 2:899890/1‑56 (MQ=255)
cAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCat > 1:1018643/1‑128 (MQ=255)
cAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCat < 2:1018643/128‑1 (MQ=255)
cAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCt > 1:487709/1‑139 (MQ=255)
ggAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca > 1:634667/1‑52 (MQ=255)
ggAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑cccccca < 2:634667/54‑3 (MQ=255)
aaTAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGccc < 1:1068912/139‑1 (MQ=255)
tACTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTccc < 2:743190/139‑1 (MQ=255)
aCTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTa < 1:29367/106‑1 (MQ=255)
aCTGTGTCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTa > 2:29367/1‑106 (MQ=255)
tgtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGt < 2:328128/131‑1 (MQ=255)
tgtCCTGAGACGTCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGt > 1:328128/1‑131 (MQ=255)
agaCGTCAGCGGAACATCAATTGGCCCCCCATTGa < 2:601988/35‑1 (MQ=255)
agaCGTCAGCGGAACATCAATTGGCCCCCCATTGa > 1:601988/1‑35 (MQ=255)
tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCg > 2:1043066/1‑139 (MQ=255)
tCAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCg > 2:869059/1‑139 (MQ=255)
cAGCGGAACATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGc < 1:1043066/139‑1 (MQ=255)
cATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTc < 2:932922/102‑1 (MQ=255)
cATCAATTGGCCCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTc > 1:932922/1‑102 (MQ=255)
|
CCGGCACAAGCTATATAGCCAACATTTGCACTGCCGGGAGTGTAATCCTGAGTCGCAAATACCCGCAGACATCTATTCGGAAATGCAATCGGAAAATAGGTTACTGTGTCCTGAGACGTCAGCGGAACATCAATTGG‑CCCCCATTGAATAATTAAACCGGATGGCAATTTTTGATATCCAGGAACTGAAGCAGAAAGCATAAAACTACCCATATCAGGTATCTGATTCGCCCCTGTCCCTACATTTCTTTTAGCCGC > NC_000913/2471626‑2471882
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
