Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,286,859 |
T→C |
intergenic (+333/+207) |
narI → / ← rttR |
nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,286,859 | 0 | T | C | 100.0%
| 106.3
/ NA
| 36 | intergenic (+333/+207) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (21/15); total (21/15) |
AAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTC > NC_000913/1286810‑1286994
|
aaGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCgg < 1:1397881/139‑1 (MQ=17)
aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg < 1:106013/116‑1 (MQ=255)
aGCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCg > 2:106013/1‑116 (MQ=12)
gCTTCTCATCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCa > 1:1573105/1‑139 (MQ=9)
aTCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctct < 1:993174/139‑1 (MQ=17)
tCCTTCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctctc < 2:1856116/139‑1 (MQ=18)
tCCCCGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGc > 2:891293/1‑139 (MQ=12)
ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCg > 2:492535/1‑121 (MQ=2)
ccGCATGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCg < 1:492535/121‑1 (MQ=17)
gcatGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCgg < 2:321170/117‑1 (MQ=255)
gcatGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCgg > 1:321170/4‑120 (MQ=19)
atGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTggggg < 2:276418/68‑1 (MQ=255)
atGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTggggg > 1:276418/2‑69 (MQ=255)
atGGGCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCt < 2:1712897/138‑1 (MQ=255)
gggCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCg > 2:966724/1‑139 (MQ=255)
gCAGAATATTTGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAg > 1:1874554/1‑139 (MQ=38)
ttGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCtt > 1:634563/1‑139 (MQ=255)
ttGATTGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCtt > 2:899737/1‑139 (MQ=255)
tGCGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg > 2:128343/1‑139 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGCAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctct < 1:1344340/107‑1 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAt < 1:1051176/38‑1 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGAt > 2:1051176/1‑38 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCg > 1:1353470/1‑139 (MQ=14)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc > 2:1708771/1‑87 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTc < 1:1708771/87‑1 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGctct > 2:1344340/1‑107 (MQ=38)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa > 2:1375077/1‑139 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa > 1:483342/1‑139 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa > 1:453929/1‑139 (MQ=255)
cGGATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGaa > 2:932810/1‑139 (MQ=255)
ggATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATGGTGTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGa < 2:1353470/139‑1 (MQ=14)
gATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc < 1:989089/123‑1 (MQ=255)
gATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGcc > 2:989089/1‑123 (MQ=255)
gATTCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGc > 1:619309/1‑139 (MQ=255)
ttCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCtt < 1:899737/139‑1 (MQ=255)
tCGCTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAATCGAAGCTtc < 1:1375077/139‑1 (MQ=255)
|
AAGCTTCTCATCCTTCCCCGCTTGGGCAGAATATTTGATTGCGGATTCGTTTGAGAATTCCGGGGCTTTTGAAAGTGATG‑‑GTGGTGGGGGAAGGATTACTCAGCGCTGCGCGCTTCGCCCTTCGGGTCGTTGCCTGCGGCAACGCTCTCTCGCTGACGCTCGAGCCGAACCTTAGTCGAAGCTTC > NC_000913/1286810‑1286994
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
