Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,958,496 |
G→A |
intergenic (‑364/+24) |
torY ← / ← cutC |
TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,958,496 | 0 | G | A | 100.0%
| 158.5
/ NA
| 49 | intergenic (‑364/+24) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (28/21); total (28/21) |
TTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGA > NC_000913/1958363‑1958624
|
ttttAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGAc > 2:665386/1‑139 (MQ=255)
gcgcACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTaaaa < 1:665386/139‑1 (MQ=255)
aCTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCa > 2:110483/1‑139 (MQ=255)
tGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCAtt > 1:1729967/1‑139 (MQ=255)
gCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGa > 2:9761/1‑139 (MQ=255)
gATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTc > 1:1876776/1‑139 (MQ=255)
gATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTc > 1:1821552/1‑139 (MQ=255)
ttttttATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttc > 2:401402/1‑139 (MQ=255)
tttATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGc < 2:1729967/139‑1 (MQ=255)
cTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAAccgc > 2:1625606/1‑139 (MQ=255)
gTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAAccgccg > 2:1735638/1‑139 (MQ=255)
ttCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCGTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:1579679/1‑139 (MQ=255)
ttCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACcgccgc > 1:1294077/1‑139 (MQ=255)
aGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc < 2:1550892/139‑1 (MQ=255)
aGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc < 1:9761/139‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACa > 1:439357/1‑61 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACa < 2:439357/61‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAAc > 2:1581064/1‑70 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAAc > 1:1833807/1‑70 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAAc < 1:1581064/70‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAAc < 2:1833807/70‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa < 1:78978/101‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa > 2:78978/1‑101 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCCATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACg > 1:1673268/1‑139 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCgccgcc > 1:853/1‑130 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCgccgcc < 2:853/130‑1 (MQ=255)
aaaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACg > 2:1708183/1‑139 (MQ=255)
aaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGatat < 1:401402/139‑1 (MQ=255)
aGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGAtata > 2:1664405/1‑139 (MQ=255)
tGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCgccgcc < 2:382119/118‑1 (MQ=255)
tGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCgccgcc > 1:382119/1‑118 (MQ=255)
gCAGGGGCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCcg > 2:1757348/1‑139 (MQ=255)
gCCTGGTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGtt < 1:1735638/139‑1 (MQ=255)
gTACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCt > 2:1797319/1‑139 (MQ=255)
tACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCtg < 1:1757348/139‑1 (MQ=255)
tACGAGCAAGCATCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCtg < 1:110483/139‑1 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAGTCgccgcc > 2:1428158/1‑92 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAGTCgccgcc < 1:1428158/92‑1 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc < 2:1654972/94‑1 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGcccc > 1:1654972/1‑94 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGt < 2:1376267/96‑1 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGt > 1:1376267/1‑96 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGAtata > 2:575426/1‑106 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGAtata < 1:575426/106‑1 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCtgatga > 1:782509/1‑139 (MQ=255)
agcaagcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCtgatga > 1:477297/1‑139 (MQ=255)
agcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATg < 2:1294077/139‑1 (MQ=255)
gcaTCATATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATgg < 2:477297/139‑1 (MQ=255)
catcatATTGAGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGa < 2:1673268/139‑1 (MQ=255)
|
TTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATAACGCGAATACTCGTCCGCGTGTTCATCTGATGACATGGA > NC_000913/1958363‑1958624
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
