Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,328,224	G→A	E364K (GAA→AAA)	crfC →	clamp‑binding sister replication fork colocalization protein, dynamin‑related

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,328,224	0	G	A	100.0%	272.2 / NA	83	E364K (GAA→AAA)	crfC	clamp‑binding sister replication fork colocalization protein, dynamin‑related
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/41); total (42/41)

CGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCGTTGCTTCAT  >  NC_000913/4328090‑4328358

cGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGa                                                                                                                                    >  1:1007694/1‑139 (MQ=255)

cGCTGATGAAAGGCTATATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGa                                                                                                                                    >  2:1669418/1‑139 (MQ=255)

      tgaAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGc                                                                                                                              <  1:1743266/139‑1 (MQ=255)

             cTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATg                                                                                                                         >  2:1486733/1‑137 (MQ=255)

             cTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATg                                                                                                                         <  1:1486733/137‑1 (MQ=255)

             cTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGcc                                                                                                                       >  1:885668/1‑139 (MQ=255)

              tGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCcg                                                                                                                      <  2:1814940/139‑1 (MQ=255)

               gTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCcgc                                                                                                                     >  1:1432736/1‑139 (MQ=255)

               gTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCcgc                                                                                                                     >  2:1538495/1‑139 (MQ=255)

               gTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCcgc                                                                                                                     >  1:982783/1‑139 (MQ=255)

                tATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCcgcg                                                                                                                    <  2:982783/139‑1 (MQ=255)

                     cGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTgg                                                                                                               >  1:1487680/1‑139 (MQ=255)

                      gCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              >  1:643736/1‑139 (MQ=255)

                      gCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              <  2:1113391/139‑1 (MQ=255)

                        cacaGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAg                                                                                                            >  2:512337/1‑139 (MQ=255)

                          cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAGTCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCCGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgc                                                                                                          >  1:1369022/1‑139 (MQ=255)

                          cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGTCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCACCACTTGGCAgac                                                                                                          >  1:479835/1‑137 (MQ=255)

                          cagcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgc                                                                                                          >  2:979839/1‑139 (MQ=255)

                            gcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcgc                                                                                                        <  2:497348/139‑1 (MQ=255)

                            gcagATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcgc                                                                                                        >  1:757366/1‑139 (MQ=255)

                                atatTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGc                                                                                                    >  1:517899/1‑139 (MQ=255)

                                      ccGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATg                                                                                              <  1:979839/139‑1 (MQ=255)

                                       cGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGc                                                                                             >  2:1595818/1‑139 (MQ=255)

                                        ggTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGcc                                                                                            >  1:198665/1‑139 (MQ=255)

                                         gtgtCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   >  1:893332/1‑131 (MQ=255)

                                         gtgtCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   <  2:893332/131‑1 (MQ=255)

                                           gtcgtcGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAATTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTGATGCCGAt                                                                                         <  1:11003/139‑1 (MQ=255)

                                            tcgtcgATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              >  2:647254/1‑117 (MQ=255)

                                            tcgtcgATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              <  1:647254/117‑1 (MQ=255)

                                             cgtcgATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCt                                                                                       >  1:1524353/1‑139 (MQ=255)

                                                      ggggCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   >  1:1192160/1‑118 (MQ=255)

                                                      ggggCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   <  2:1192160/118‑1 (MQ=255)

                                                      ggggCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCt                                                                              <  2:517899/139‑1 (MQ=255)

                                                             ccTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              >  1:527245/1‑100 (MQ=255)

                                                             ccTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGc                                                                                                              <  2:527245/100‑1 (MQ=255)

                                                             ccTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACat                                                                       <  2:1077183/139‑1 (MQ=255)

                                                             ccTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACat                                                                       >  2:20609/1‑139 (MQ=255)

                                                             ccTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACat                                                                       >  1:1474702/1‑139 (MQ=255)

                                                                 gCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCAt                                                                                               >  2:1658186/1‑111 (MQ=255)

                                                                 gCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCAt                                                                                               <  1:1658186/111‑1 (MQ=255)

                                                                  cGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   >  2:704524/1‑106 (MQ=255)

                                                                  cGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCg                                                                                                   <  1:704524/106‑1 (MQ=255)

                                                                  cGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCg                                                                  >  2:702724/1‑139 (MQ=255)

                                                                      tCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCa                                                                                                             <  1:178702/92‑1 (MQ=255)

                                                                      tCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCa                                                                                                             >  2:178702/1‑92 (MQ=255)

                                                                       cGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGc                                                                                    <  2:807474/116‑1 (MQ=255)

                                                                       cGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCAtg                                                             >  1:1580021/1‑139 (MQ=255)

                                                                       cGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGAGTCATGCCGATCTGGc                                                                                    >  1:807474/1‑116 (MQ=255)

                                                                             cgcTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCg                                                       <  2:1580021/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  1:512337/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  1:1669418/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  2:1483939/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  2:1432736/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  1:702724/139‑1 (MQ=255)

                                                                               cTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  2:885668/139‑1 (MQ=255)

                                                                                  tGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAg                                                  <  2:1487680/139‑1 (MQ=255)

                                                                                        aGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTgg                                            >  1:1750647/1‑139 (MQ=255)

                                                                                          ccAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcgc                                                                                                        <  1:178576/77‑1 (MQ=255)

                                                                                          ccAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcgc                                                                                                        >  2:178576/1‑77 (MQ=255)

                                                                                          ccAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGa                                                                           <  1:67675/106‑1 (MQ=255)

                                                                                          ccAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGa                                                                           >  2:67675/1‑106 (MQ=255)

                                                                                              caacGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGcc                                                                                                                             <  2:1662534/52‑1 (MQ=255)

                                                                                              caacGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGcc                                                                                                                             >  1:1662534/1‑52 (MQ=255)

                                                                                               aacGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGAtt                                     <  2:1828272/139‑1 (MQ=255)

                                                                                               aacGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGAtt                                     <  2:1474702/139‑1 (MQ=255)

                                                                                                acGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTc                                    <  2:1524353/139‑1 (MQ=255)

                                                                                                   gTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCt                                 >  1:31510/1‑139 (MQ=255)

                                                                                                            caccGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     <  2:1351029/110‑1 (MQ=255)

                                                                                                            caccGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTAGCGGACCTCGAACATATTCGTCATGCTGCCGAt                                                     >  1:1351029/1‑110 (MQ=255)

                                                                                                              ccGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGc                      >  1:182466/1‑139 (MQ=255)

                                                                                                              ccGCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGc                      <  2:1022387/139‑1 (MQ=255)

                                                                                                                gCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                                                                                         >  2:439339/1‑54 (MQ=255)

                                                                                                                gCCAGAGCAACAACGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGgcg                                                                                                         <  1:439339/54‑1 (MQ=255)

                                                                                                                         acaacGCTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCg           <  2:1750647/139‑1 (MQ=255)

                                                                                                                               cTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCgg                                                                                  >  2:157756/1‑62 (MQ=255)

                                                                                                                               cTGGGTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCgg                                                                                  <  1:157756/62‑1 (MQ=255)

                                                                                                                                 gggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGc                                                                                                    >  2:1429177/1‑42 (MQ=255)

                                                                                                                                 gggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGc                                                                                                    <  1:1429177/42‑1 (MQ=255)

                                                                                                                                  ggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGAt                                      >  1:979462/1‑103 (MQ=255)

                                                                                                                                  ggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGAt                                      <  2:979462/103‑1 (MQ=255)

                                                                                                                                  ggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCGTTGTTTCAt  <  2:1007694/139‑1 (MQ=255)

                                                                                                                                  ggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCGTTGCTTCAt  <  2:198665/139‑1 (MQ=255)

                                                                                                                                  ggTGAAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCGTTGCTTCAt  >  1:263492/1‑139 (MQ=255)

CGCTGATGAAAGGCTGTATTACGCCACAGCAGATATTTCCGGTGTCGTCGATGTGGGGCTACCTGGCGAATCGGGCGCGCTATGAGTTAGCCAACAACGGTAAGTTACCACCGCCAGAGCAACAACGCTGGGTGGAAGATTTTGCCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGATCTGGCGGACCTCGAACATATTCGTCATGCTGCCGATCAGTTGTGGGAAGATTCGCTGTTCGCCCAGCCAATTCAGGCGTTGCTTCAT  >  NC_000913/4328090‑4328358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A