Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
776 |
60.0 |
3074904 |
90.1% |
2770488 |
104.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,451,573 |
T→C |
G4G (GGA→GGG) |
yfcR ← |
putative fimbrial‑like adhesin protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,451,573 | 0 | T | C | 100.0%
| 174.1
/ NA
| 49 | G4G (GGA→GGG) | yfcR | putative fimbrial‑like adhesin protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (25/24); total (25/24) |
AGGGTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGTCAGCACCGGTACGCTA > NC_000913/2451446‑2451695
|
aGGGTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGtcat < 2:1480402/139‑1 (MQ=255)
ggTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGtcatca > 2:71645/1‑139 (MQ=255)
gAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACGGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg < 2:1273208/139‑1 (MQ=255)
gAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAGCTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg < 2:25362/139‑1 (MQ=255)
gAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg < 2:1435969/139‑1 (MQ=255)
aCCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg < 2:576744/131‑1 (MQ=255)
aCCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg > 1:576744/1‑131 (MQ=255)
gcAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATcc > 2:873045/1‑139 (MQ=255)
aaTTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCt > 2:1461732/1‑139 (MQ=255)
aCGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATc > 1:1011189/1‑124 (MQ=255)
aCGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATc < 2:1011189/124‑1 (MQ=255)
cGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACcccccc > 2:1398105/1‑91 (MQ=255)
cGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACcccccc < 1:1398105/91‑1 (MQ=255)
tactacCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACGAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg < 1:1266519/100‑1 (MQ=255)
tactacCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTg > 2:1266519/1‑100 (MQ=255)
actacCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGc < 1:873045/139‑1 (MQ=255)
aGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGgctct < 2:598227/100‑1 (MQ=255)
aGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGgctct > 1:598227/1‑100 (MQ=255)
aGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGga > 1:854157/1‑139 (MQ=255)
aGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCAt > 1:1151285/1‑124 (MQ=255)
aGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCAt < 2:1151285/124‑1 (MQ=255)
tAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCa > 1:1357104/1‑139 (MQ=255)
aCAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCa < 2:1185651/101‑1 (MQ=255)
aCAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCa > 1:1185651/1‑101 (MQ=255)
cTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCaaa > 1:577721/1‑139 (MQ=255)
tGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAAc > 2:1125452/1‑118 (MQ=255)
tGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAAc < 1:1125452/118‑1 (MQ=255)
tGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAg > 2:1525772/1‑139 (MQ=255)
agcagcCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGAc > 2:1137163/1‑139 (MQ=255)
gcagcCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACg < 1:71645/139‑1 (MQ=255)
gcCCTGCGCCCACTACAAACTTTTGACTCCTAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGc < 2:381995/95‑1 (MQ=255)
gcCCTGCGCCCACTACAAACTTTTGACTCATAAcccccc > 1:305692/1‑39 (MQ=255)
gcCCTGCGCCCACTACAAACTTTTGACTCATAAcccccc < 2:305692/39‑1 (MQ=255)
gcCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGc > 1:381995/1‑95 (MQ=255)
gcCCTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTaa > 1:1452457/1‑139 (MQ=255)
ccTGCGCCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGt < 2:577721/139‑1 (MQ=255)
gcgcCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGTCAg > 2:568186/1‑139 (MQ=255)
cgcCCACTACAAACTTTTGACTCATAACCCCCCCCGtcatca < 1:899881/42‑1 (MQ=255)
cgcCCACTACAAACTTTTGACTCATAACCCCCCCCGtcatca > 2:899881/1‑42 (MQ=255)
cgcCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCAt < 1:1307323/65‑1 (MQ=255)
cgcCCACTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCAt > 2:1307323/1‑65 (MQ=255)
aCTACAAACTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGTCAGCACCgg < 1:1137163/139‑1 (MQ=255)
aCTTTTGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGTCAGCACCGGTACGCTa < 2:1175931/139‑1 (MQ=255)
ttGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGTGCCAAAGTCGTTGACGTAAGTCAg < 1:1201890/122‑1 (MQ=255)
ttGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGTGCCAAAGTCGTTGACGTAAGTCAg > 2:1201890/1‑122 (MQ=255)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGgct < 1:459105/37‑1 (MQ=38)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGgct > 2:459105/1‑37 (MQ=38)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaag < 1:926420/80‑1 (MQ=255)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGgaac > 2:926420/1‑79 (MQ=255)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGt > 2:538420/1‑108 (MQ=255)
tGACTCATAACCCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGt < 1:538420/108‑1 (MQ=255)
aTAACCCCCCCCGTCATCAGCCTTCGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAAc > 2:1036299/1‑77 (MQ=255)
aTAACCCCCCCCGTCATCAGCCTTCGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAAc < 1:1036299/77‑1 (MQ=255)
|
AGGGTGGCGGAGCATCGACCAACACGCGCAGAATTAAATCCACGGGTTTACTACCAGCCATAGCAGATAAACTACAGACACTGCATACCAGCAGCCCTGCGCCCACTACAAACTTTTGACTCATAACTCCCCCCGTCATCAGCCTTTGCGGCTCTGCTCTTCATCCACCTGGCAGCTGTTGCCATTGCACTGGAAGAACAGCGGCATCCGTGCGCCAAAGTCGTTGACGTAAGTCAGCACCGGTACGCTA > NC_000913/2451446‑2451695
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
