Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I1 R1 759 71.0 3673240 91.5% 3361014 104.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,158,575 A→G Q29R (CAG→CGG)  oxyR → oxidative and nitrosative stress transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,158,5750AG100.0% 377.8 / NA 104Q29R (CAG→CGG) oxyRoxidative and nitrosative stress transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (56/48);  total (56/48)

Only 100 of 107 total aligned reads displayed.

ATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCG  >  NC_000913/4158439‑4158707
                                                                                                                                        |                                                                                                                                    
aTTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccggc                                                                                                                                    <  1:495430/139‑1 (MQ=255)
          tACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGATGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAg                                                                                                                          >  2:1140855/1‑139 (MQ=255)
               aTCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGc                                                                                                                     >  1:1482000/1‑139 (MQ=255)
               aTCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGc                                                                                                                     >  1:1343736/1‑139 (MQ=255)
                tCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCa                                                                                                                    >  2:388542/1‑139 (MQ=255)
                    cATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAAtt                                                                                                                >  1:1217378/1‑139 (MQ=255)
                      tGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCg                                                                                                              >  1:700510/1‑139 (MQ=255)
                       gAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGt                                                                                                             <  1:328719/139‑1 (MQ=255)
                              cGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTgg                                                                                                      >  2:1321409/1‑139 (MQ=255)
                                  gCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  >  1:676300/1‑139 (MQ=255)
                                      tGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAg                                                                                              <  2:1737137/139‑1 (MQ=255)
                                       ggaggaTGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGc                                                                                             >  1:664842/1‑139 (MQ=255)
                                              ggatAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGt                                                                                      <  2:668344/139‑1 (MQ=255)
                                                atAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGa                                                                                    <  2:1217378/139‑1 (MQ=255)
                                                  aaTGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCa                                                                                                                    <  2:1495036/105‑1 (MQ=255)
                                                  aaTGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCa                                                                                                                    >  1:1495036/1‑105 (MQ=255)
                                                   aTGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGt                                                                                 >  1:506325/1‑139 (MQ=255)
                                                   aTGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGt                                                                                 >  1:1307348/1‑139 (MQ=255)
                                                      aaTATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGc                                                                              <  2:417965/139‑1 (MQ=255)
                                                         atTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg                                                                           >  2:1114944/1‑139 (MQ=255)
                                                         atTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTgg                                                                           >  1:172111/1‑139 (MQ=255)
                                                         atTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCA‑TTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGa                                                                          >  1:833244/1‑139 (MQ=255)
                                                           tCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg                                                                         <  2:506325/139‑1 (MQ=255)
                                                           tCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATGTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGACGTGATGTTGCTGGAg                                                                         <  1:1727121/139‑1 (MQ=255)
                                                                aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  1:162034/139‑1 (MQ=255)
                                                                aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  1:1114944/139‑1 (MQ=255)
                                                                aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  1:1140855/139‑1 (MQ=255)
                                                                aTCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  1:1321409/139‑1 (MQ=255)
                                                                 tCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCg                                                                                                              <  1:1091939/96‑1 (MQ=255)
                                                                 tCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAcc                                                                   <  2:172111/139‑1 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGTCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCt                                                                                            <  1:323297/110‑1 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGTCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCt                                                                                            >  2:323297/1‑110 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg                                                                         <  2:1475305/129‑1 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAg                                                                         >  1:1475305/1‑129 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGcc                                                               >  1:1431351/1‑139 (MQ=255)
                                                                     gAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGcc                                                               >  2:227223/1‑139 (MQ=255)
                                                                      aGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  >  1:1773408/1‑103 (MQ=255)
                                                                      aGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  <  2:430124/103‑1 (MQ=255)
                                                                      aGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  <  2:1773408/103‑1 (MQ=255)
                                                                         aCCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTaa                                                           >  1:1460782/1‑139 (MQ=255)
                                                                           cTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAcc                                                                   <  2:271413/129‑1 (MQ=255)
                                                                           cTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAcc                                                                   >  1:271413/1‑129 (MQ=255)
                                                                           cTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAg                                                         >  1:240747/1‑139 (MQ=255)
                                                                            tggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCa                                                                                                                    <  2:1722594/79‑1 (MQ=255)
                                                                            tggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCa                                                                                                                    >  1:1722594/1‑79 (MQ=255)
                                                                             ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                                                       >  2:867747/1‑139 (MQ=255)
                                                                             ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                                                       >  2:460787/1‑139 (MQ=255)
                                                                             ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                                                       >  1:1360499/1‑139 (MQ=255)
                                                                             ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                                                       >  1:232275/1‑139 (MQ=255)
                                                                             ggtggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAgtg                                                       >  1:1701483/1‑139 (MQ=255)
                                                                               tggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgtt                                                     <  2:700510/139‑1 (MQ=255)
                                                                                ggCATTGGCTGAACCCCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  <  1:382900/93‑1 (MQ=255)
                                                                                ggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccggcc                                                                                                                                   <  1:1645775/60‑1 (MQ=255)
                                                                                ggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTagccggcc                                                                                                                                   >  2:1645775/1‑60 (MQ=255)
                                                                                ggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGa                                                                                                  >  2:382900/1‑93 (MQ=255)
                                                                                ggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg                                                    >  1:1575058/1‑139 (MQ=255)
                                                                                ggCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttg                                                    >  1:1343238/1‑139 (MQ=255)
                                                                                 gCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttgt                                                   >  2:600466/1‑139 (MQ=255)
                                                                                 gCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGtgttgt                                                   <  2:1307348/139‑1 (MQ=255)
                                                                                  cATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTaa                                                                                                           <  1:153497/82‑1 (MQ=255)
                                                                                  cATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTaa                                                                                                           >  2:153497/1‑82 (MQ=255)
                                                                                  cATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTgttgtt                                                  >  1:1631081/1‑139 (MQ=255)
                                                                                     tgccagAACACAGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGGTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAc                                               >  1:1065190/6‑139 (MQ=255)
                                                                                      ggCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAcc                                              <  1:600466/139‑1 (MQ=255)
                                                                                      ggCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAcc                                              <  2:676300/139‑1 (MQ=255)
                                                                                       gCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCAccc                                             >  1:264507/1‑139 (MQ=255)
                                                                                           aaCACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGc                                         >  1:1034220/1‑139 (MQ=255)
                                                                                                cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGc                                                                              <  2:53104/97‑1 (MQ=255)
                                                                                                cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGc                                                                              >  1:53104/1‑97 (MQ=255)
                                                                                                cGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGGTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  1:416377/107‑1 (MQ=255)
                                                                                                 gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCg                                                                       >  2:713197/1‑103 (MQ=255)
                                                                                                 gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCg                                                                       <  1:713197/103‑1 (MQ=255)
                                                                                                 gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCa                                                                  <  1:1780308/108‑1 (MQ=255)
                                                                                                 gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCa                                                                  >  2:1780308/1‑108 (MQ=255)
                                                                                                 gCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAt                                   >  2:1385883/1‑139 (MQ=255)
                                                                                                  ccATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtg                                  <  2:1436453/139‑1 (MQ=255)
                                                                                                    aTTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAAtgct                                <  1:322824/139‑1 (MQ=255)
                                                                                                              tGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                      <  1:388542/139‑1 (MQ=255)
                                                                                                              tGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                      <  2:833244/139‑1 (MQ=255)
                                                                                                              tGCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                      <  1:867747/139‑1 (MQ=255)
                                                                                                               gCGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATc                     <  2:1431351/139‑1 (MQ=255)
                                                                                                                cGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCa                    >  2:1046745/1‑139 (MQ=255)
                                                                                                                cGGCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCa                    <  2:1701483/139‑1 (MQ=255)
                                                                                                                  gCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTaa                                                                                                           <  1:548861/50‑1 (MQ=255)
                                                                                                                  gCAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTaa                                                                                                           >  2:548861/1‑50 (MQ=255)
                                                                                                                   cAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGgc                 <  2:1343238/139‑1 (MQ=255)
                                                                                                                   cAGATTCCTGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGgc                 <  2:1482000/139‑1 (MQ=255)
                                                                                                                           tGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGGGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                      <  2:932361/126‑1 (MQ=255)
                                                                                                                           tGCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGAt                      >  1:932361/1‑126 (MQ=255)
                                                                                                                            gCCACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGt        <  1:460787/139‑1 (MQ=255)
                                                                                                                             ccACGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGtg       >  1:1660884/1‑139 (MQ=255)
                                                                                                                               aCGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGtgct     <  1:1046745/139‑1 (MQ=255)
                                                                                                                                cGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTa                                                            <  2:1005862/83‑1 (MQ=255)
                                                                                                                                cGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTa                                                            >  1:1005862/1‑83 (MQ=255)
                                                                                                                                cGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGt             <  1:355071/130‑1 (MQ=255)
                                                                                                                                cGTTAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGt             >  2:355071/1‑130 (MQ=255)
                                                                                                                                  ttAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    <  2:1298862/73‑1 (MQ=255)
                                                                                                                                  ttAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCg  >  1:174882/1‑139 (MQ=255)
                                                                                                                                  ttAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCg  <  2:1660884/139‑1 (MQ=255)
                                                                                                                                  ttAGCCGGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATAAGCTGGGCGTGATGTTGCTGGAGCGGAc                                                                    >  1:1298862/1‑73 (MQ=255)
                                                                                                                                        |                                                                                                                                    
ATTGCTATTCTACCTATCGCCATGAACTATCGTGGCGATGGAGGATGGATAATGAATATTCGTGATCTTGAGTACCTGGTGGCATTGGCTGAACACCGCCATTTTCGGCGTGCGGCAGATTCCTGCCACGTTAGCCAGCCGACGCTTAGCGGGCAAATTCGTAAGCTGGAAGATGAGCTGGGCGTGATGTTGCTGGAGCGGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCG  >  NC_000913/4158439‑4158707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A