Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F1 I2 R1 758 59.3 2864096 93.9% 2689386 105.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,742,590 (G)5→6 intergenic (+29/+11) cfa → / ← ribC cyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,742,5851.G98.5% 242.7 / ‑3.5 68intergenic (+24/+16)cfa/ribCcyclopropane fatty acyl phospholipid synthase, SAM‑dependent/riboflavin synthase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base G (33/34);  total (33/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01

TGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCA  >  NC_000913/1742449‑1742697
                                                                                                                                         |                                                                                                                
tGTTTACCTATTATCTGAATGCCTGTGCAGGTTCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCC‑gg                                                                                                                >  2:849082/1‑139 (MQ=255)
          ttatCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGAttt                                                                                                       >  2:1317025/1‑139 (MQ=255)
            atCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCa                                                                                                     >  2:27769/1‑139 (MQ=255)
               tGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGAt                                                                                                  <  2:1262835/139‑1 (MQ=255)
                    gCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGc                                                                                             >  1:1135772/1‑139 (MQ=255)
                    gCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGc                                                                                             >  1:839805/1‑139 (MQ=255)
                     ccTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATc                                                                                                 <  1:804972/134‑1 (MQ=255)
                     ccTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATc                                                                                                 >  2:804972/1‑134 (MQ=255)
                      cTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCtt                                                                                           <  2:677633/139‑1 (MQ=255)
                       tgtgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTc                                                                                          >  1:735760/1‑139 (MQ=255)
                        gtgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCt                                                                                         <  2:735760/139‑1 (MQ=255)
                         tgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCa                                                                                                <  1:212348/131‑1 (MQ=255)
                         tgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCa                                                                                                >  2:212348/1‑131 (MQ=255)
                         tgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCtg                                                                                        >  2:603742/1‑139 (MQ=255)
                         tgCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCtg                                                                                        >  2:967373/1‑139 (MQ=255)
                           cAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTTTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCtgtg                                                                                      >  2:110759/1‑139 (MQ=255)
                            aGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGc                                                                                     <  2:1135772/139‑1 (MQ=255)
                              gTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCt                                                                                   >  1:1315111/1‑139 (MQ=255)
                                 cTTTCCGCTCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGTTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGt                                                                                <  1:849082/139‑1 (MQ=255)
                                 cTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGt                                                                                >  2:534435/1‑139 (MQ=255)
                                 cTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGt                                                                                >  1:1344801/1‑139 (MQ=255)
                                 cTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGt                                                                                <  2:548564/139‑1 (MQ=255)
                                        cgcCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCa                                                                         <  2:1228573/139‑1 (MQ=255)
                                          cccGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATg                                                                       <  2:1095951/139‑1 (MQ=255)
                                                        ctctGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgc                                                         >  1:693604/1‑139 (MQ=255)
                                                        ctctGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgc                                                         >  1:263489/1‑139 (MQ=255)
                                                        ctctGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgc                                                         <  1:1067799/139‑1 (MQ=255)
                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccgc                                                      >  2:85026/1‑139 (MQ=255)
                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccgc                                                      >  2:442518/1‑139 (MQ=255)
                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccgc                                                      >  1:831396/1‑139 (MQ=255)
                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccgc                                                      <  1:442518/139‑1 (MQ=255)
                                                                    gtgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                             <  2:1344801/139‑1 (MQ=255)
                                                                    gtgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                             <  2:1315111/139‑1 (MQ=255)
                                                                     tgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGAGc                                                                                     >  2:813320/1‑98 (MQ=255)
                                                                     tgtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGAGc                                                                                     <  1:813320/98‑1 (MQ=255)
                                                                       ttCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCC‑GGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTg                     <  1:683114/139‑1 (MQ=255)
                                                                         ctcACGCGGTGTTGAAAACGGCCTTCGAGCGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTa                                        <  1:967373/139‑1 (MQ=255)
                                                                           cACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                      <  1:110759/139‑1 (MQ=255)
                                                                           cACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                      <  2:839805/139‑1 (MQ=255)
                                                                           cACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                      <  1:1317025/139‑1 (MQ=255)
                                                                                 gtgtTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCt                                >  2:100605/1‑139 (MQ=255)
                                                                                     tGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCa                            <  1:1327223/139‑1 (MQ=255)
                                                                                         aaCGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGc                        <  1:534435/139‑1 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCAt                                                                        >  2:1404593/1‑88 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCAt                                                                        <  1:1404593/88‑1 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTg                     >  1:648329/1‑139 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTg                     >  2:145147/1‑139 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTg                     <  2:648329/139‑1 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCC‑gggggg                                                                                                            >  2:365583/1‑50 (MQ=255)
                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCC‑gggggg                                                                                                            <  1:365583/51‑2 (MQ=255)
                                                                                              ccTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                             >  2:1308185/1‑113 (MQ=255)
                                                                                              ccTTCGAGTGGCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                             <  1:1308185/113‑1 (MQ=255)
                                                                                                        gCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCa                                                                                                >  2:1311231/1‑52 (MQ=255)
                                                                                                        gCTCGCTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCa                                                                                                <  1:1311231/52‑1 (MQ=255)
                                                                                                             cTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccg                                                       >  1:765392/1‑88 (MQ=255)
                                                                                                             cTAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTgccg                                                       <  2:765392/88‑1 (MQ=255)
                                                                                                              tAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCt                      <  2:117726/120‑1 (MQ=255)
                                                                                                              tAAAGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCt                      >  1:117726/1‑120 (MQ=255)
                                                                                                               aaaGGCTATTCTATCACCCCCTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCa  <  1:27769/139‑1 (MQ=255)
                                                                                                                            tcacccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTa                                        <  2:377319/85‑1 (MQ=255)
                                                                                                                            tcacccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTa                                        >  1:377319/4‑88 (MQ=255)
                                                                                                                              acccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                      <  2:618775/87‑1 (MQ=255)
                                                                                                                              acccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                      >  1:618775/2‑88 (MQ=255)
                                                                                                                               cccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGtt                                           >  2:372964/1‑82 (MQ=255)
                                                                                                                               cccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGtt                                           >  2:321688/1‑82 (MQ=255)
                                                                                                                               cccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGtt                                           <  1:372964/82‑1 (MQ=255)
                                                                                                                               cccccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGtt                                           <  1:321688/82‑1 (MQ=255)
                                                                                                                                 cccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGAt          <  1:1222803/113‑1 (MQ=255)
                                                                                                                                 cccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGAt          >  2:1222803/1‑113 (MQ=255)
                                                                                                                                  ccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGc                                                                                     >  2:1160090/1‑37 (MQ=255)
                                                                                                                                  ccTCTCCGGGGGGCGATTTCAGATCAGGCTTCTGTGc                                                                                     <  1:1160090/37‑1 (MQ=255)
                                                                                                                                         |                                                                                                                
TGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGGCGATTTCAGATCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCA  >  NC_000913/1742449‑1742697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A