Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 765 46.1 2269152 93.8% 2128464 105.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,619,478 Δ9 bp coding (1250‑1258/1323 nt) deoA → thymidine phosphorylase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4619478 4619486 9 68 [0] [0] 66 deoA thymidine phosphorylase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 46194770 (0.000)64 (1.470) 39/194 0.1 100% coding (1249/1323 nt) deoA thymidine phosphorylase
?NC_000913 4619487 = 0 (0.000)coding (1259/1323 nt) deoA thymidine phosphorylase

GATK/CNVnator alignment

N/A