Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I2 R1
|
760 |
67.6 |
3323148 |
92.7% |
3080558 |
109.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,813,482 |
A→G |
V61A (GTG→GCG) |
cedA ← |
cell division modulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,813,482 | 0 | A | G | 100.0%
| 201.5
/ NA
| 56 | V61A (GTG→GCG) | cedA | cell division modulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (28/28); total (28/28) |
TTTGAATGAATGTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTCCGTGCGTGGG > NC_000913/1813346‑1813616
|
tttGAATGAATGTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGcgca > 1:1555742/1‑139 (MQ=255)
aatgaatgTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTaa > 1:138553/1‑139 (MQ=255)
aatgaatgTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTaa < 1:746523/139‑1 (MQ=255)
tgTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCg > 1:1274662/1‑139 (MQ=255)
gCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGa > 2:867610/1‑139 (MQ=255)
aCGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAgcg < 1:743193/139‑1 (MQ=255)
cGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAgcgc > 2:508308/1‑139 (MQ=255)
aCAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAAt < 2:567923/139‑1 (MQ=255)
aGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGa < 2:1274662/139‑1 (MQ=255)
tttCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGActct < 1:824712/139‑1 (MQ=255)
tGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGAct > 1:386042/1‑127 (MQ=255)
tGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGAct < 2:386042/127‑1 (MQ=255)
tGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTa > 1:1001153/1‑139 (MQ=255)
gTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTAc < 1:815628/139‑1 (MQ=255)
tAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACa < 1:818586/139‑1 (MQ=255)
aCTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACaaa < 2:138553/139‑1 (MQ=255)
tCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACaaa > 2:646564/1‑137 (MQ=255)
tCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACaaa < 1:646564/137‑1 (MQ=255)
cccGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGc < 2:1001153/139‑1 (MQ=255)
ccGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCa > 2:405254/1‑139 (MQ=255)
ggCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAAc > 2:1658011/1‑139 (MQ=255)
ccGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTg < 2:1555742/139‑1 (MQ=255)
ggTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgc < 1:1658011/139‑1 (MQ=255)
gTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgca < 1:1426280/139‑1 (MQ=255)
ttACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgc < 2:1306255/127‑1 (MQ=255)
ttACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgc > 1:1306255/1‑127 (MQ=255)
ttACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACa > 2:871056/1‑139 (MQ=255)
tACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACAt > 2:157976/1‑139 (MQ=255)
aCTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATc > 1:172016/1‑139 (MQ=255)
aGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgc < 2:571322/121‑1 (MQ=255)
aGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACgc > 1:571322/1‑121 (MQ=255)
aGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCacga > 1:1538662/1‑139 (MQ=255)
tCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCacgaaa > 1:852169/1‑139 (MQ=255)
tCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCacgaaa > 1:702821/1‑139 (MQ=255)
cACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCacgaaac > 2:716966/1‑139 (MQ=255)
ccccTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTAc > 2:746549/1‑91 (MQ=255)
ccccTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTAc < 1:746549/91‑1 (MQ=255)
cccTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATcc < 1:508308/139‑1 (MQ=255)
ccTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCtt > 1:671269/1‑139 (MQ=255)
cTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCttt < 1:157976/139‑1 (MQ=255)
gCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATc > 1:965835/1‑139 (MQ=255)
cGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCg > 2:618465/1‑139 (MQ=255)
gATCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCa < 2:702821/139‑1 (MQ=255)
tCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATc > 1:704948/1‑71 (MQ=255)
tCTGATTTGCCCAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATc < 2:704948/71‑1 (MQ=255)
cccAACGTTGGGCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTggcgg > 2:504257/1‑139 (MQ=255)
ggCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTg > 1:779571/1‑125 (MQ=255)
ggCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTg < 2:779571/125‑1 (MQ=255)
ggCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTcc > 1:1467086/1‑139 (MQ=255)
ggCAGATTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTcc < 1:405254/139‑1 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGc < 2:79623/58‑1 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGc > 1:79623/1‑58 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGcc < 1:436530/70‑1 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGcc > 2:436530/1‑70 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTCcgtgcg < 2:671269/139‑1 (MQ=255)
aTTCAGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTCcgtgcg < 1:504257/139‑1 (MQ=255)
aGGCGCAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTCCGTGCGTggg < 2:1538662/139‑1 (MQ=255)
|
TTTGAATGAATGTAGCAACGAAATACAGAATTTCAGGTCATGTAACTCCCGGCAAAACCGGGAGGTATGTAATCCTTACTCAGTCACTTCCCCTTCCTGGCGGATCTGATTTGCCCAACGTTGGGCAGATTCAGGCACAGTAAACGCCGGTGAGCGCAGAAATGACTCTCCCATCAGTACAAACGCAACATATTTGCCACGCAGCATCCAGACATCACGAAACGAATCCATCTTTATCGCATGTTCTGGCGGCGCGGGTTCCGTGCGTGGG > NC_000913/1813346‑1813616
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
