Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F1 I1 R1	778	68.7	3228504	93.4%	3015422	109.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	585,607	+G	coding (27/954 nt)	ompT ←	DLP12 prophage, outer membrane protease VII, outer membrane protein 3b

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	585,605	1	.	G	100.0%	283.4 / NA	78	L10P (CTG→CCG)	ompT	DLP12 prophage, outer membrane protease VII, outer membrane protein 3b
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (35/43); total (35/43)

CTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑GGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTCCACTGTTTATATTTTGTTTA  >  NC_000913/585480‑585733

cTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCa                                                                                                                      <  2:504514/139‑1 (MQ=255)

    aTAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAg                                                                                                                  >  2:485507/1‑139 (MQ=255)

         cacGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑ggga                                                                                                                              <  1:435875/121‑3 (MQ=255)

         cacGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑ggga                                                                                                                              >  2:435875/1‑119 (MQ=255)

           cGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGcc                                                                                                           <  2:1304960/139‑1 (MQ=255)

           cGCTCTTTTGTCTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGcc                                                                                                           <  2:1053623/139‑1 (MQ=255)

             ctctTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGAGTATTCCCAGAAGTTTCGCCCg                                                                                                         >  2:947235/1‑139 (MQ=255)

             ctctTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCg                                                                                                         >  2:97951/1‑139 (MQ=255)

             ctctTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCg                                                                                                         >  1:934649/1‑139 (MQ=255)

              tctTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGc                                                                                                        >  1:561166/1‑139 (MQ=255)

              tctTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGc                                                                                                        >  2:1353657/1‑139 (MQ=255)

                          ccGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTtctc                                                                                            >  2:1243420/1‑139 (MQ=255)

                          ccGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑ggga                                                                                                                              <  2:582549/104‑3 (MQ=255)

                          ccGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑ggga                                                                                                                              >  1:582549/1‑102 (MQ=255)

                             cTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCAt                                                                                         >  1:226075/1‑139 (MQ=255)

                                 gagTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     <  1:1243420/139‑1 (MQ=255)

                                 gagTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     <  1:947235/139‑1 (MQ=255)

                                 gagTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     <  2:780189/139‑1 (MQ=255)

                                        aaGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGtttt                                                                              >  2:284059/1‑139 (MQ=255)

                                            cTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     <  1:1393413/128‑1 (MQ=255)

                                            cTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     >  2:1393413/1‑128 (MQ=255)

                                            cTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATg                                                                          >  1:413131/1‑139 (MQ=255)

                                             tAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGa                                                                         <  2:934649/139‑1 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGCCTATTCGCAGAAGTTTCGCCCGCATaa                                                                                                    >  1:1195404/1‑111 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATaa                                                                                                    <  2:1195404/111‑1 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGtt                                                                                               <  2:109695/116‑1 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGtt                                                                                               >  1:109695/1‑116 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     >  1:1395578/1‑126 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCaa                                                                                     <  2:1395578/126‑1 (MQ=255)

                                              aaTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAt                                                                        <  2:42602/139‑1 (MQ=255)

                                               aTGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAtt                                                                       <  2:726012/139‑1 (MQ=255)

                                                    cGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGa                                                                         >  1:1210898/1‑132 (MQ=255)

                                                    cGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGa                                                                         <  2:1210898/132‑1 (MQ=255)

                                                    cGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAata                                                                  >  1:432978/1‑139 (MQ=255)

                                                    cGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAata                                                                  <  1:1146828/139‑1 (MQ=255)

                                                           aTGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCa                                                                                                       <  2:1451263/95‑1 (MQ=255)

                                                           aTGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCa                                                                                                       >  1:1451263/1‑95 (MQ=255)

                                                                 tCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCa                                                                                                       <  1:785190/89‑1 (MQ=255)

                                                                 tCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCa                                                                                                       >  2:785190/1‑89 (MQ=255)

                                                                 tCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAt                                                                        >  2:529065/1‑120 (MQ=255)

                                                                 tCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAt                                                                        <  1:529065/120‑1 (MQ=255)

                                                                  cAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    <  2:910399/139‑1 (MQ=255)

                                                                  cAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    <  2:432978/139‑1 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATaa                                                                                                    >  1:1564678/1‑90 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATaa                                                                                                    <  2:1564678/90‑1 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCa                                                                                      >  1:281090/1‑104 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCa                                                                                      <  2:281090/104‑1 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    <  1:749492/138‑1 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    >  2:749492/1‑138 (MQ=255)

                                                                   aGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATc                                                   >  1:1329603/1‑139 (MQ=255)

                                                                     gAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCt                                                  <  2:1021834/138‑1 (MQ=255)

                                                                     gAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTa                                                 >  2:1412345/1‑139 (MQ=255)

                                                                     gAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTAGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCt                                                  >  1:1021834/1‑138 (MQ=255)

                                                                        tAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACt                                              >  1:956365/1‑139 (MQ=255)

                                                                           aCGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTaa                                           >  2:371448/1‑139 (MQ=255)

                                                                            cGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAAt                                          <  2:226075/139‑1 (MQ=255)

                                                                                aaaGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGtt                                                                                               <  1:758871/82‑1 (MQ=255)

                                                                                aaaGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGtt                                                                                               >  2:758871/1‑82 (MQ=255)

                                                                                aaaGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGt                                      <  2:956365/139‑1 (MQ=255)

                                                                                aaaGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGt                                      <  2:413131/139‑1 (MQ=255)

                                                                                  aGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTAtttttt                                                        >  1:1115929/1‑119 (MQ=255)

                                                                                  aGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTAtttttt                                                        <  2:1115929/119‑1 (MQ=255)

                                                                                   gTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCaa                                   <  1:1353657/139‑1 (MQ=255)

                                                                                        ggTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACa                              <  2:1329603/139‑1 (MQ=255)

                                                                                         gTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    >  1:870152/1‑116 (MQ=255)

                                                                                         gTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTatat                                                    <  2:870152/116‑1 (MQ=255)

                                                                                          tAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACata                            <  2:275756/139‑1 (MQ=255)

                                                                                          tAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACata                            <  1:1412345/139‑1 (MQ=255)

                                                                                          tAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACata                            <  1:371448/139‑1 (MQ=255)

                                                                                             aaGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTg                         >  2:1178495/1‑139 (MQ=255)

                                                                                              aGCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATGTAACTTAATGAGTCAATTACATATTGc                        >  1:413274/1‑139 (MQ=255)

                                                                                               gCAAAAGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCt                       <  2:413274/139‑1 (MQ=255)

                                                                                                 aaaaGAGCTGATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTcc                     <  2:561166/139‑1 (MQ=255)

                                                                                                          gATCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTCCACTGTTtat            <  1:1178495/139‑1 (MQ=255)

                                                                                                           aTCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTtc                                                                                              >  2:836113/1‑56 (MQ=255)

                                                                                                           aTCGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTtc                                                                                              <  1:836113/56‑1 (MQ=255)

                                                                                                             cGCAATAGGGGTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTCCACTGTTTATAtt         <  1:284059/139‑1 (MQ=255)

                                                                                                                    ggggTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTCCACTGTTTATATTTTGTTTa  <  1:1262171/139‑1 (MQ=255)

                                                                                                                     gggTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAt                                                                        <  2:64402/68‑1 (MQ=255)

                                                                                                                     gggTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGAt                                                                        >  1:64402/1‑68 (MQ=255)

                                                                                                                     gggTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGa                                                                     <  2:471204/71‑1 (MQ=255)

                                                                                                                     gggTTGTCAGGGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGa                                                                     >  1:471204/1‑71 (MQ=255)

CTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGTAAACGATAAAGTCTCGGTAGAAGCAAAAGAGCTGATCGCAATAGGGGTTGTCA‑GGACTATTCCCAGAAGTTTCGCCCGCATAAAAGTTCTCCATTCAATCGTTTTAATGATTGAATATGTATTTTTTATATCTAACTTAATGAGTCAATTACATATTGCTCCACTGTTTATATTTTGTTTA  >  NC_000913/585480‑585733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A