Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F1 I1 R1 778 68.7 3228504 93.4% 3015422 109.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,470,611 G→A T101T (ACC→ACT)  ridA ← enamine/imine deaminase, reaction intermediate detoxification

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,470,6110GA100.0% 240.9 / NA 74T101T (ACC→ACT) ridAenamine/imine deaminase, reaction intermediate detoxification
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/38);  total (36/38)

CGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTCGACGATCGCTTTT  >  NC_000913/4470476‑4470743
                                                                                                                                       |                                                                                                                                    
cGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGGAACTTCAACGCAAGAACGTGCCGGGAAAGTg                                                                                                                                   <  1:261581/139‑1 (MQ=255)
 gTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACCTCAACGCAAGAACGTGCCGGGAAAGTgg                                                                                                                                  >  1:711274/1‑139 (MQ=255)
  tttGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGGTCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGc                                                                                                                                 <  1:232410/139‑1 (MQ=255)
        atcaGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATTGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTtgtg                                                                                                                           <  2:992201/139‑1 (MQ=255)
             aCTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCgg                                                                                                                      >  2:816283/1‑139 (MQ=255)
                tAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTga                                                                                                                   <  1:1589911/139‑1 (MQ=255)
                  aTCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTgaag                                                                                                                 >  1:908997/1‑139 (MQ=255)
                   tCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTgaaga                                                                                                                >  2:1048466/1‑139 (MQ=255)
                       ggCCTGATAGCCCGAATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTg                                                                                                                                   <  1:1026686/116‑1 (MQ=255)
                       ggCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTg                                                                                                                                   >  2:1026686/1‑116 (MQ=255)
                       ggCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGtctgtctctt                                                                                                            >  2:918305/1‑130 (MQ=255)
                       ggCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTgaagaa                                                                                                               <  2:1448981/136‑1 (MQ=255)
                       ggCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTgaagaa                                                                                                               >  1:1448981/1‑136 (MQ=255)
                       ggCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGc                                                                                                            <  2:1012928/139‑1 (MQ=255)
                                 cccGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg                                                                                                  <  1:1575050/139‑1 (MQ=255)
                                 cccGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg                                                                                                  >  1:1244804/1‑139 (MQ=255)
                                     gATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGc                                                                                                            <  1:134936/125‑1 (MQ=255)
                                     gATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGc                                                                                                            >  2:134936/1‑125 (MQ=255)
                                      aTTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGtt                                                                                                                         >  1:1245217/1‑111 (MQ=255)
                                      aTTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGtt                                                                                                                         <  2:1245217/111‑1 (MQ=255)
                                                   ttAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAg                                                                                <  2:908997/139‑1 (MQ=255)
                                                   ttAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAg                                                                                <  1:1369483/139‑1 (MQ=255)
                                                         acgaACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTc                                                                          <  1:1048466/139‑1 (MQ=255)
                                                           gaACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAg                                                                        >  1:1547771/1‑139 (MQ=255)
                                                            aaCAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGt                                                                               >  1:244405/1‑131 (MQ=255)
                                                            aaCAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGt                                                                               <  2:244405/131‑1 (MQ=255)
                                                            aaCAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGa                                                                       >  2:60152/1‑139 (MQ=255)
                                                             aCAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGAt                                                                      <  1:1448623/139‑1 (MQ=255)
                                                                       cTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGtt                                                                                                                              >  2:1580923/1‑73 (MQ=255)
                                                                       cTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGtt                                                                                                                              <  1:1580923/73‑1 (MQ=255)
                                                                         tCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAaca                                                          >  1:1196410/1‑139 (MQ=255)
                                                                          cGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAacac                                                         <  2:1594967/139‑1 (MQ=255)
                                                                           gATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGCACGTGCCGGGAAAGTGGCg                                                                                                                                <  2:1073325/67‑1 (MQ=255)
                                                                           gATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCg                                                                                                                                >  1:1073325/1‑67 (MQ=255)
                                                                             tctcAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGt                                                      <  1:60152/139‑1 (MQ=255)
                                                                                 aaTCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGtt                                                                           >  1:358931/1‑114 (MQ=255)
                                                                                 aaTCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGtt                                                                           <  2:358931/114‑1 (MQ=255)
                                                                                  aTCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGt                                                                                                   <  1:707242/89‑1 (MQ=255)
                                                                                  aTCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGt                                                                                                   >  2:707242/1‑89 (MQ=255)
                                                                                  aTCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGttt                                                 >  2:889029/1‑139 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTg                                                                                                                                   >  1:336436/1‑52 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTg                                                                                                                                   <  2:336436/52‑1 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTAc                                                                                          <  2:477574/93‑1 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTAc                                                                                          >  1:477574/1‑93 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGAt                                                                      <  1:365097/113‑1 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGAt                                                                      >  2:365097/1‑113 (MQ=255)
                                                                                       cACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACg                                            >  1:341101/1‑139 (MQ=255)
                                                                                        aCGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGa                                           >  2:60657/1‑139 (MQ=255)
                                                                                             tttCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg                                                                                                  >  1:262947/1‑79 (MQ=255)
                                                                                             tttCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg                                                                                                  <  2:262947/79‑1 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCg                                                                                                                                <  1:1451711/47‑1 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCg                                                                                                                                >  2:1451711/1‑47 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGcc                                    >  2:1568854/1‑139 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGcc                                    <  1:60657/139‑1 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGcc                                    <  2:1547771/139‑1 (MQ=255)
                                                                                               tCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGcc                                    >  1:388259/1‑139 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTa                                                                                           <  1:610562/77‑1 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTa                                                                                           >  2:610562/1‑77 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACaaa                                                            <  1:1322216/108‑1 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACaaa                                                            >  2:1322216/1‑108 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGccc                                   >  1:644661/1‑133 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGccc                                   <  2:644661/133‑1 (MQ=255)
                                                                                                      aCGGGCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTc                             >  2:711597/1‑139 (MQ=255)
                                                                                                        gggCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACg                                                        <  1:1468498/110‑1 (MQ=255)
                                                                                                        gggCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACg                                                        >  2:1468498/1‑110 (MQ=255)
                                                                                                        gggCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTaa                                              >  2:484139/1‑120 (MQ=255)
                                                                                                        gggCAACTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTaa                                              <  1:484139/120‑1 (MQ=255)
                                                                                                            aaCTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCa                       >  2:1347715/1‑139 (MQ=255)
                                                                                                             aCTTCAACGCAAGAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAg                      <  1:816283/139‑1 (MQ=255)
                                                                                                                         gAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTcgacga          <  2:311128/139‑1 (MQ=255)
                                                                                                                         gAACGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTcgacga          >  1:538863/1‑139 (MQ=255)
                                                                                                                          aaCGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTCGACGAt         <  2:341101/139‑1 (MQ=255)
                                                                                                                          aaCGTGCCGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTCGACGAt         <  1:1067223/139‑1 (MQ=255)
                                                                                                                                 cGGGAAAGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTCGACGATCGCtttt  <  2:538863/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                    
CGTTTGTCATCAGACTTAATCCGGGCATGATAGCCCGGATTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTTACGGTTGCGAAGTCGTTCAGATCTTTTACAAACACGGTAGTTTTAACGATGTCGCCCACTTTCAGGCCAGCGGCTTCGACGATCGCTTTT  >  NC_000913/4470476‑4470743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A