Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I1 R1
|
759 |
65.2 |
3386260 |
90.7% |
3071337 |
101.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,110,806 |
A→G |
G234G (GGT→GGC) |
tpiA ← |
triosephosphate isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,110,806 | 0 | A | G | 100.0%
| 139.2
/ NA
| 39 | G234G (GGT→GGC) | tpiA | triosephosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (19/20); total (19/20) |
TGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCACCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAGCGATGTTAGCGTCAACTTTAGCG > NC_000913/4110670‑4110926
|
tgAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGcgcc > 1:1206206/1‑139 (MQ=255)
agaTTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGcgccac > 2:1324344/1‑139 (MQ=255)
ttttGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCaccaa > 2:1363399/1‑139 (MQ=255)
taagtGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCaa > 1:1133853/1‑139 (MQ=255)
tGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAg > 1:1155624/1‑139 (MQ=255)
ccGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGa < 2:1155624/139‑1 (MQ=255)
cGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGAc < 2:1206206/139‑1 (MQ=255)
tCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACa > 2:1685290/1‑139 (MQ=255)
cAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACag < 1:1363399/139‑1 (MQ=255)
ttAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAgccg < 1:1685290/139‑1 (MQ=255)
tAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg < 1:815185/81‑1 (MQ=255)
tAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg > 2:815185/1‑81 (MQ=255)
aaGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAgccgcc < 1:1688765/139‑1 (MQ=255)
aaGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAgccgcc > 2:327819/1‑139 (MQ=255)
gCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg < 1:1323026/78‑1 (MQ=255)
gCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg > 2:1323026/1‑78 (MQ=255)
gTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTg > 1:647085/1‑139 (MQ=255)
ttCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcg < 1:340785/62‑1 (MQ=255)
ttCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcg > 2:340785/1‑62 (MQ=255)
tCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGc < 2:1341208/95‑1 (MQ=255)
tCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGc > 1:1341208/1‑95 (MQ=255)
tCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACtt > 2:980300/1‑139 (MQ=255)
gCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAg < 1:980300/139‑1 (MQ=255)
gCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAg < 2:1133853/139‑1 (MQ=255)
ttAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATg < 1:1608895/123‑1 (MQ=255)
ttAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATg > 2:1608895/1‑123 (MQ=255)
tACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGAt > 2:721654/1‑117 (MQ=255)
tACTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGAt < 1:721654/117‑1 (MQ=255)
cTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg < 1:1408336/44‑1 (MQ=255)
cTGCGAAGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcgcg > 2:1408336/1‑44 (MQ=255)
aaGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcg > 2:1618584/1‑37 (MQ=255)
aaGGCGTCAGCTTTCAGAGAAGCGCCACCAACCAgcg < 1:1618584/37‑1 (MQ=255)
ggCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGt < 1:321545/41‑1 (MQ=255)
ggCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGt > 2:321545/1‑41 (MQ=255)
gCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATg < 2:1232116/105‑1 (MQ=255)
gCGTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATg > 1:1232116/1‑105 (MQ=255)
gTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCAc > 1:671424/1‑108 (MQ=255)
gTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCAc < 2:671424/108‑1 (MQ=255)
gTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAGCGATGTTAGCGTCAACTTTAGCg > 1:160750/1‑139 (MQ=255)
gTCAGCTTTCAGAGAAGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAGCGATGTTAGCGTCAACTTTAGCg < 2:647085/139‑1 (MQ=255)
aGCGCCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATg < 1:1304544/88‑1 (MQ=255)
|
TGAGATTTTGCGTTAAGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCACCTGTCAGACTTAAGCCTGTTTAGCCGCTTCTGCAGCTTTAACGATTACTGCGAAGGCGTCAGCTTTCAGAGAAGCACCACCAACCAGCGCGCCGTCGATATCCGGCTGAGCAAACAGTTCTGCAGCGTTAGACGCGTTTACAGAGCCGCCGTACTGAATGATCACTTGTTCAGCGATGTTAGCGTCAACTTTAGCG > NC_000913/4110670‑4110926
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
