Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F1 I1 R1	750	51.0	2595496	93.6%	2429384	106.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,078,042	G→A	pseudogene (103/168 nt)	yeeW →	CP4‑44 prophage, uncharacterized protein,Phage or Prophage Related

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,078,042	0	G	A	100.0%	517.5 / NA	157	pseudogene (103/168 nt)	yeeW	CP4‑44 prophage, uncharacterized protein,Phage or Prophage Related
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (84/73); total (84/73)

Only 100 of 158 total aligned reads displayed.

ATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAA  >  NC_000913/2077906‑2078176

aTAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGAcc                                                                                                                                      <  1:752887/139‑1 (MQ=255)

       tACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGACGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaaa                                                                                                                               >  2:815157/1‑139 (MQ=255)

        aCCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaaaa                                                                                                                              <  2:909486/139‑1 (MQ=255)

        aCCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaaaa                                                                                                                              <  1:2957/139‑1 (MQ=255)

         cccTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAAc                                                                                                                             >  2:932369/1‑139 (MQ=255)

           cTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACgg                                                                                                                           >  2:106275/1‑139 (MQ=255)

              ggTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGaa                                                                                                                                >  1:620503/1‑131 (MQ=255)

                tAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTAtt                                                                                                                      <  1:343562/139‑1 (MQ=255)

                         ggAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  1:102087/1‑139 (MQ=255)

                          gAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCgt                                                                                                            >  2:1057340/1‑139 (MQ=255)

                               gAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGtggtgg                                                                                                       <  2:1026307/139‑1 (MQ=255)

                                            tGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGActc                                                                                          >  2:294175/1‑139 (MQ=255)

                                                      cAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAaca                                                                                >  1:1215175/1‑139 (MQ=255)

                                                          gTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            <  2:1215175/139‑1 (MQ=255)

                                                           ttAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCTGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGc                                                                           >  2:157691/1‑139 (MQ=255)

                                                                    aGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  <  1:932369/139‑1 (MQ=255)

                                                                      gcgcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCa                                                                                                                    >  1:89995/1‑87 (MQ=255)

                                                                      gcgcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCa                                                                                                                    >  1:633995/1‑87 (MQ=255)

                                                                      gcgcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCa                                                                                                                    <  2:633995/87‑1 (MQ=255)

                                                                        gcTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGc                                                              >  1:550213/1‑139 (MQ=255)

                                                                         cTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcc                                                             >  1:1116193/1‑139 (MQ=255)

                                                                                tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTg                                                                                              >  1:78552/1‑99 (MQ=255)

                                                                                tGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTg                                                                                              <  2:78552/99‑1 (MQ=255)

                                                                                  gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:815157/139‑1 (MQ=255)

                                                                                  gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:550213/139‑1 (MQ=255)

                                                                                  gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:74529/139‑1 (MQ=255)

                                                                                  gggCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:1289851/139‑1 (MQ=255)

                                                                                    gCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:638640/1‑137 (MQ=255)

                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             <  2:358696/78‑1 (MQ=255)

                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  1:358696/1‑78 (MQ=255)

                                                                                      acaTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:930167/1‑135 (MQ=255)

                                                                                        aTTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:262701/133‑1 (MQ=255)

                                                                                         ttGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  1:124576/1‑75 (MQ=255)

                                                                                         ttGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             >  1:655024/1‑75 (MQ=255)

                                                                                         ttGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCcgcg                                                                                                             <  2:124576/75‑1 (MQ=255)

                                                                                          tGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:885705/131‑1 (MQ=255)

                                                                                          tGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTaa                                            >  2:660075/1‑139 (MQ=255)

                                                                                          tGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTaa                                            >  1:314762/1‑139 (MQ=255)

                                                                                          tGTCGTTGACAGTGATGGTGTTAATACCAGTGAGCTGATTAATAAGCCTGCTGAAACCGGCTATTCACTCCGCGTGGTGGGTGACGGTGACTGTACCGATACACCCGGAACCTCTACCAGCCCTGACAAGTCGCTGtta                                            >  2:1288061/1‑137 (MQ=255)

                                                                                              gTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACa                                        >  1:953372/1‑139 (MQ=255)

                                                                                               ttGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCTGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACaa                                       <  1:157691/139‑1 (MQ=255)

                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGt                                                                                               >  2:279340/1‑81 (MQ=255)

                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGt                                                                                               <  1:279340/81‑1 (MQ=255)

                                                                                                 gACATTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATg                                     <  2:953372/139‑1 (MQ=255)

                                                                                                    aTTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  >  2:1263189/1‑107 (MQ=255)

                                                                                                    aTTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTa                                             >  2:212224/1‑128 (MQ=255)

                                                                                                    aTTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTa                                             <  1:212224/128‑1 (MQ=255)

                                                                                                    aTTGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAg                                  <  2:25747/139‑1 (MQ=255)

                                                                                                      tGATGGTGTTAATATCACTGAACTGATTGATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGc                                                                  <  2:1205629/105‑1 (MQ=255)

                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGAc                                                                                                  <  1:697886/73‑1 (MQ=255)

                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGAc                                                                                                  >  2:697886/1‑73 (MQ=255)

                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                <  2:893999/139‑1 (MQ=255)

                                                                                                      tGATGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTg                                >  1:1253355/1‑139 (MQ=255)

                                                                                                        aTGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:1268840/1‑117 (MQ=255)

                                                                                                        aTGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:1268840/117‑1 (MQ=255)

                                                                                                        aTGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGAt                              <  2:314762/139‑1 (MQ=255)

                                                                                                        aTGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGAt                              >  2:909869/1‑139 (MQ=255)

                                                                                                         tGGTGTTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGa                                                                                             <  2:625831/75‑1 (MQ=255)

                                                                                                            tgtTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcc                                                             <  1:680989/104‑1 (MQ=255)

                                                                                                            tgtTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcc                                                             >  2:680989/1‑104 (MQ=255)

                                                                                                             gtTAATATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAgg                         >  1:683489/1‑139 (MQ=255)

                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          <  2:72281/119‑1 (MQ=255)

                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGa                                          >  1:72281/1‑119 (MQ=255)

                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCa                                   <  2:1197413/126‑1 (MQ=255)

                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCa                                   >  1:1197413/1‑126 (MQ=255)

                                                                                                                aaTATCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGta                      >  1:36936/1‑139 (MQ=255)

                                                                                                                  tatCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGtata                    <  2:683489/139‑1 (MQ=255)

                                                                                                                   atCACTGAACTGATTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAg                   >  2:448225/1‑139 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGa                                                                                             <  2:873881/62‑1 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  1:1291178/103‑1 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGAt                              <  2:404978/125‑1 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGAt                              >  1:404978/1‑125 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGta                      <  2:354184/133‑1 (MQ=255)

                                                                                                                      actgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAACCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGc                >  1:772332/1‑139 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:663218/101‑1 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATg                                     >  2:1069054/1‑116 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATg                                     <  1:1069054/116‑1 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa              >  1:54108/1‑139 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa              >  2:38841/1‑139 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTAACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCa              >  2:413092/1‑139 (MQ=255)

                                                                                                                        tgaactgaTTAATAAGACCGCTGAAAACGGGTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGTCAGCCCTCACCAGt                                                    >  2:646613/1‑101 (MQ=255)

                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTg                                               >  1:580407/1‑104 (MQ=255)

                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTg                                               <  2:580407/104‑1 (MQ=255)

                                                                                                                          aactgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAg                                  >  1:817321/1‑117 (MQ=255)

                                                                                                                           actgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTa           <  1:398642/139‑1 (MQ=255)

                                                                                                                            ctgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTaa          >  1:1204024/1‑139 (MQ=255)

                                                                                                                             tgaTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAAc         <  1:943383/139‑1 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCcg                                                                                                               <  1:452810/35‑1 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGaaa                                                                                  <  2:433241/64‑1 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGaaa                                                                                  >  1:433241/1‑64 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            >  2:880258/1‑70 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCgg                                                                            <  1:880258/70‑1 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:1266286/1‑94 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  1:1012374/1‑94 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    <  2:1012374/94‑1 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGt                                                    >  2:936170/1‑94 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAg                                  >  2:1283304/1‑112 (MQ=255)

                                                                                                                               aTTAATAAGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACca       >  2:34494/1‑139 (MQ=255)

                                                                                                                                    taaGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACa                           <  1:417226/114‑1 (MQ=255)

                                                                                                                                    taaGACCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGaa  >  2:347405/1‑139 (MQ=255)

ATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGATGACACTGGAAGCCGACAGCGTTAACGTACAGGCGCTGGATATGGGGCACATTGTCGTTGACATTGATGGTGTTAATATCACTGAACTGATTAATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAA  >  NC_000913/2077906‑2078176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A