Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F1 I1 R1	750	51.0	2595496	93.6%	2429384	106.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,101,039	(C)_7→8	coding (585/720 nt)	yggN ←	DUF2884 family putative periplasmic protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,101,032	1	.	C	96.7%	207.9 / ‑0.6	60	coding (592/720 nt)	yggN	DUF2884 family putative periplasmic protein
Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (26/32); total (26/34)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGGCG  >  NC_000913/3100900‑3101165

agGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑cccccc                                                                                                                                 >  1:246718/1‑139 (MQ=255)

agGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑cccccc                                                                                                                                 >  2:159294/1‑139 (MQ=255)

agGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑cccccc                                                                                                                                 >  1:181704/1‑139 (MQ=255)

     tattTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑ccccccccagg                                                                                                                            <  1:778465/139‑5 (MQ=255)

     tattTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑ccccccccagg                                                                                                                            <  1:159294/139‑5 (MQ=255)

            aaTTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCa                                                                                                                      >  1:623191/1‑139 (MQ=255)

              ttCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGc                                                                                                                    <  2:623191/139‑1 (MQ=255)

              ttCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGc                                                                                                                    <  1:745599/139‑1 (MQ=255)

               tCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGca                                                                                                                   <  2:181704/139‑1 (MQ=255)

               tCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTCCCCAGca                                                                                                                   <  2:1152441/139‑1 (MQ=255)

                 ccGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGcaca                                                                                                                 >  1:1006219/1‑139 (MQ=255)

                   gACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACAtt                                                                                                               <  2:1054833/139‑1 (MQ=255)

                              tGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGt                                                                                                    >  1:611464/1‑139 (MQ=255)

                                      tCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            <  2:634024/139‑1 (MQ=255)

                                      tCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACGGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCAGG‑‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            <  2:735959/139‑1 (MQ=255)

                                                  acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GCCCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAc                                                                                 >  1:464420/1‑139 (MQ=255)

                                                  acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                >  2:1042330/1‑139 (MQ=255)

                                                  acaACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCg                                                                               <  2:391239/139‑1 (MQ=255)

                                                        cgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGcac                                                                                                                  <  1:1170345/99‑1 (MQ=255)

                                                        cgGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGcac                                                                                                                  >  2:1170345/1‑99 (MQ=255)

                                                          gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTc                                                                                                                         <  2:997179/90‑1 (MQ=255)

                                                          gCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTc                                                                                                                         >  1:997179/1‑90 (MQ=255)

                                                             aCAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGcc                                                                     <  1:1002473/139‑1 (MQ=255)

                                                              cAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGccc                                                                    >  1:1034765/1‑139 (MQ=255)

                                                                aaCATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCAt                                                                  <  2:1034765/139‑1 (MQ=255)

                                                                     cTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCAt                                                             >  2:608783/1‑139 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGca                                                                                                                   >  1:1084230/1‑82 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGca                                                                                                                   <  2:1084230/82‑1 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑c                                                                                                                                      >  2:347131/1‑62 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑c                                                                                                                                      >  2:388103/1‑62 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑c                                                                                                                                      <  1:347131/62‑1 (MQ=255)

                                                                        tGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑c                                                                                                                                      <  1:388103/62‑1 (MQ=255)

                                                                         gCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAAt                                                         >  1:844288/1‑139 (MQ=255)

                                                                          ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGc                                                                                                                    <  2:997280/79‑1 (MQ=255)

                                                                          ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGc                                                                                                                    >  1:997280/1‑79 (MQ=255)

                                                                          ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATg                                                        <  2:468843/139‑1 (MQ=255)

                                                                          ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑ccccccccagg                                                                                                                            >  1:1286883/1‑66 (MQ=255)

                                                                          ccAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑ccccccccagg                                                                                                                            <  2:1286883/70‑5 (MQ=255)

                                                                             aaCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg                                                     >  2:436292/1‑139 (MQ=255)

                                                                              aCTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGt                                                    >  1:1182598/1‑139 (MQ=255)

                                                                                  ctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            <  1:937863/95‑1 (MQ=255)

                                                                                  ctgGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTAccgccg                                                                                            >  2:937863/1‑95 (MQ=255)

                                                                                          cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGTCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTc                                        <  2:246718/139‑1 (MQ=255)

                                                                                          cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTc                                        <  2:611464/139‑1 (MQ=255)

                                                                                          cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTc                                        <  1:1286921/139‑1 (MQ=255)

                                                                                          cTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTc                                        <  2:844288/139‑1 (MQ=255)

                                                                                            ttttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg                                                     >  2:462841/1‑124 (MQ=255)

                                                                                            ttttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTg                                                     <  1:462841/124‑1 (MQ=255)

                                                                                            ttttCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCa                                      <  1:1042330/139‑1 (MQ=255)

                                                                                                  tGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCAtt                                <  2:1182598/139‑1 (MQ=255)

                                                                                                   gCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GCCCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTa                                              >  1:19581/1‑125 (MQ=255)

                                                                                                   gCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GCCCCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTa                                              <  2:19581/125‑1 (MQ=255)

                                                                                                    cTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGca                                                                                                                   <  2:1201013/54‑1 (MQ=255)

                                                                                                    cTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGca                                                                                                                   >  1:1201013/1‑54 (MQ=255)

                                                                                                    cTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGCCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGc                              >  2:240901/1‑139 (MQ=255)

                                                                                                         tCCACTCGGTTTGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGAt                         <  2:1006219/139‑1 (MQ=255)

                                                                                                                  tttGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCa                                                                                                                      >  1:802505/1‑37 (MQ=255)

                                                                                                                  tttGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCa                                                                                                                      <  2:802505/37‑1 (MQ=255)

                                                                                                                  tttGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCa                                  <  2:890321/121‑1 (MQ=255)

                                                                                                                  tttGGATTGAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCa                                  >  1:890321/1‑121 (MQ=255)

                                                                                                                          gAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGAtt                        >  2:346060/1‑123 (MQ=255)

                                                                                                                          gAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGAtt                        <  1:346060/123‑1 (MQ=255)

                                                                                                                          gAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACt                    <  1:741780/127‑1 (MQ=255)

                                                                                                                          gAGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACt                    >  2:741780/1‑127 (MQ=255)

                                                                                                                           aGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                <  1:55468/66‑1 (MQ=255)

                                                                                                                           aGGATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCAcc                                                                                >  2:55468/1‑66 (MQ=255)

                                                                                                                            ggATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACt                    >  2:559573/1‑125 (MQ=255)

                                                                                                                            ggATTGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACt                    <  1:559573/125‑1 (MQ=255)

                                                                                                                                tGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCa                                      >  1:371594/1‑103 (MQ=255)

                                                                                                                                tGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCa                                      <  2:371594/103‑1 (MQ=255)

                                                                                                                                tGCA‑GC‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGgcg  <  1:509918/139‑1 (MQ=255)

AGGATTATTTTAAATTCCCGACCAGGGCTTTGCGGCTATCTTCCAGAGTCACAACGCGGCTACAAACATCTTTGCCAAACTGCTGGAAATCTTTTTCCTGCTTTTTCCACTCGGTTTGGATTGAGGATTGCA‑G‑‑CCCCCCCAGGCTTCCCAGCACATTCTGTAATGGGTTACCGCCGCTTTTCAGCACCGCTTTCGCGCCCATTTCATTAATGCTGTCCTGTAAAATTCCACCCATTGCCTGATTCACTAATTGCTGGCCTTCGGCG  >  NC_000913/3100900‑3101165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A