Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	757	76.1	3598070	93.4%	3360597	108.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,712,518	(C)_6→7	intergenic (+360/‑251)	nth → / → dtpA	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,712,512	1	.	C	98.9%	313.4 / ‑6.3	91	intergenic (+354/‑257)	nth/dtpA	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
Reads supporting (aligned to +/- strand): ref base . (0/1); major base C (46/43); minor base T (0/1); total (46/45)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 101 total aligned reads displayed.

GAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGA  >  NC_000913/1712374‑1712645

gAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑Ca                                                                                                                                        <  1:581616/139‑1 (MQ=255)

  aTCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACCCTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑cc                                                                                                                                     <  2:699466/139‑1 (MQ=255)

  aTCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACAGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑cc                                                                                                                                     >  1:302553/1‑139 (MQ=255)

     aGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑ccccc                                                                                                                                  <  1:24253/139‑1 (MQ=255)

     aGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑ccccc                                                                                                                                  <  1:434165/139‑1 (MQ=255)

          aaaaTCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑ccccccctct                                                                                                                             <  1:35828/139‑5 (MQ=255)

                 tttAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTcagtgca                                                                                                                       >  1:1489338/1‑139 (MQ=255)

                 tttAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTcagtgca                                                                                                                       >  1:1187509/1‑139 (MQ=255)

                          acacacGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGaaaaaa                                                                                                              >  1:1442413/1‑139 (MQ=255)

                                  aacaaATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGt                                                                                                      >  2:1020066/1‑139 (MQ=255)

                                  aacaaATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGt                                                                                                      >  1:1196368/1‑139 (MQ=255)

                                               cTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaa                                                                                         >  2:905688/1‑139 (MQ=255)

                                                  cAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGaaaaa                                                                                      >  1:1561945/1‑139 (MQ=255)

                                                       cATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa                                                                                 >  1:535275/1‑139 (MQ=255)

                                                         ttACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACg                                                                               <  2:949349/139‑1 (MQ=255)

                                                         ttACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACg                                                                               <  2:1442413/139‑1 (MQ=255)

                                                            cacTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTg                                                                            >  1:1269877/1‑139 (MQ=255)

                                                                 gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATaa                                                                       >  1:487162/1‑139 (MQ=255)

                                                                 gCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATaa                                                                       >  1:215708/1‑139 (MQ=255)

                                                                  cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑cccc                                                                                                                                   >  1:128803/1‑77 (MQ=255)

                                                                  cTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑cccc                                                                                                                                   <  2:128803/77‑1 (MQ=255)

                                                                   tATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACa                                                                     <  1:1580407/139‑1 (MQ=255)

                                                                      ttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAttt                                                                  >  1:497688/1‑139 (MQ=255)

                                                                      ttttCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAttt                                                                  <  1:905688/139‑1 (MQ=255)

                                                                           aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg                                                             >  2:1222589/1‑139 (MQ=255)

                                                                           aGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCgg                                                             <  2:1257981/139‑1 (MQ=255)

                                                                            gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTATGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGa                                                            <  1:1146320/139‑1 (MQ=255)

                                                                            gAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGa                                                            <  1:1222589/139‑1 (MQ=255)

                                                                              aaCTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAAt                                                          <  2:497688/139‑1 (MQ=255)

                                                                                   gACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTg                                                     >  2:149353/1‑139 (MQ=255)

                                                                                    aCTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGa                                                    >  2:7996/1‑139 (MQ=255)

                                                                                       aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa                                                                                 <  1:763860/107‑1 (MQ=255)

                                                                                       aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa                                                                                 >  2:763860/1‑107 (MQ=255)

                                                                                       aTCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAAtt                                                 >  1:1272482/1‑139 (MQ=255)

                                                                                          tcACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTccc                                              <  2:1272482/139‑1 (MQ=255)

                                                                                           cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTcccc                                             >  2:1513878/1‑139 (MQ=255)

                                                                                           cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTccc                                              <  2:1580153/138‑1 (MQ=255)

                                                                                           cACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTccc                                              >  1:1580153/1‑138 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa                                                                                 <  2:1676198/101‑1 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTaa                                                                                 >  1:1676198/1‑101 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           <  2:1495968/139‑1 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           >  1:1495968/1‑139 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           >  2:1681398/1‑139 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           <  1:1020066/139‑1 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           >  1:1434535/1‑139 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           <  1:149353/139‑1 (MQ=255)

                                                                                             cTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           >  1:1638258/1‑139 (MQ=255)

                                                                                              tAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc                                          >  2:1600282/1‑139 (MQ=255)

                                                                                               aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         <  2:10532/139‑1 (MQ=255)

                                                                                               aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         <  2:1434535/139‑1 (MQ=255)

                                                                                               aGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         <  2:1561945/139‑1 (MQ=255)

                                                                                                gTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTc                                        >  1:266343/1‑139 (MQ=255)

                                                                                                  ataagagacataTAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAg                                      <  2:1733442/128‑1 (MQ=255)

                                                                                                  aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAg                                      <  2:535275/139‑1 (MQ=255)

                                                                                                  aaaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAg                                      <  2:1638258/139‑1 (MQ=255)

                                                                                                   aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         >  2:199421/1‑135 (MQ=255)

                                                                                                   aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         <  1:199421/135‑1 (MQ=255)

                                                                                                   aaaaCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGt                                     >  2:1281069/1‑139 (MQ=255)

                                                                                                    aaaCGCTAAATAGCAGAACATTACGACGTTAAGCCAT‑CATCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGtt                                    <  1:1103142/139‑1 (MQ=255)

                                                                                                      aCGCTAAATAGCAGAACATATCTCCGTTAAGCCAT‑CA‑cccc                                                                                                                                   <  2:1184523/41‑1 (MQ=255)

                                                                                                      aCGCTAAATAGCAGAACATATCGCCGTTAAGCCATCCC‑CCCCCCTCTCAGTGCAGTGAAAAAATc                                                                                                            <  1:1319295/65‑1 (MQ=255)

                                                                                                      aCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGGGAAAAAATc                                                                                                            >  2:1319295/1‑65 (MQ=255)

                                                                                                      aCGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑cctc                                                                                                                                   >  1:1184523/1‑39 (MQ=255)

                                                                                                       cGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTtata                                 <  2:266343/139‑1 (MQ=255)

                                                                                                          tAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           <  1:748225/126‑1 (MQ=255)

                                                                                                          tAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGc                                           >  2:748225/1‑126 (MQ=255)

                                                                                                          tAAATAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGt                              >  1:1752731/1‑139 (MQ=255)

                                                                                                           aaaTAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTa                             >  2:1074563/1‑139 (MQ=255)

                                                                                                            aaTAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTaa                            <  2:215708/139‑1 (MQ=255)

                                                                                                            aaTAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTaa                            <  1:838235/139‑1 (MQ=255)

                                                                                                            aaTAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTaa                            <  2:1752731/139‑1 (MQ=255)

                                                                                                              tAGCAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACa                          <  2:1286492/139‑1 (MQ=255)

                                                                                                                 cAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGat                       <  1:1513878/139‑1 (MQ=255)

                                                                                                                 cAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGat                       <  1:7996/139‑1 (MQ=255)

                                                                                                                 cAGAACATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGat                       >  1:929137/1‑139 (MQ=255)

                                                                                                                    aaCATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGattat                    >  1:503384/1‑139 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAGCg                                                                               <  2:1030385/78‑1 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGaa                                                           <  2:559383/98‑1 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGattat                    >  2:1001859/1‑137 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGattat                    <  1:1001859/137‑1 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAAGTTAGCg                                                                               >  1:1030385/1‑78 (MQ=255)

                                                                                                                      cATATCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGGTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGaa                                                           >  1:559383/1‑98 (MQ=255)

                                                                                                                         atCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc                                          <  1:1125016/112‑1 (MQ=255)

                                                                                                                         atCGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGcc                                          >  2:1125016/1‑112 (MQ=255)

                                                                                                                           cGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAtt                                                                   <  1:561705/85‑1 (MQ=255)

                                                                                                                           cGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACAtt                                                                   >  2:561705/1‑85 (MQ=255)

                                                                                                                           cGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGatta                     >  2:928082/1‑131 (MQ=255)

                                                                                                                           cGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGatta                     <  1:928082/131‑1 (MQ=255)

                                                                                                                           cGCCGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAg             >  1:1080743/1‑139 (MQ=255)

                                                                                                                              cGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGAc          <  2:1080743/139‑1 (MQ=255)

                                                                                                                              cGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGAc          <  1:1074563/139‑1 (MQ=255)

                                                                                                                              cGTTAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGAc          <  2:487162/139‑1 (MQ=255)

                                                                                                                                ttAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCt                                         >  1:982790/1‑106 (MQ=255)

                                                                                                                                ttAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACtt        >  1:1469206/1‑139 (MQ=255)

                                                                                                                                ttAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACtt        >  1:53273/1‑139 (MQ=255)

                                                                                                                                ttAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACtt        >  1:1237525/1‑139 (MQ=255)

                                                                                                                                 tAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                                                                <  2:1171225/66‑1 (MQ=255)

                                                                                                                                 tAAGCCAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAAc                                                                                >  1:1171225/1‑66 (MQ=255)

                                                                                                                                      cAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGa  <  2:1196368/139‑1 (MQ=255)

                                                                                                                                      cAT‑CACCCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGCTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGa  <  2:302553/139‑1 (MQ=255)

GAATCAGGTTAAAATCATTTAAATTTACACACGCAACAAATATTGACCTACAAAACATTACACTGGCTATTTTTCAGAAACTGGACTATCTCACTAGTAAAAACGCTAAATAGCAGAACATATCGCCGTTAAGCCAT‑CA‑CCCCCCTCTCAGTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAATTTAACGCTGGATAACATTTCCCGGAATGGTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGA  >  NC_000913/1712374‑1712645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A