Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	757	76.1	3598070	93.4%	3360597	108.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,494,950	T→C	Y85H (TAT→CAT)	ypdI →	putative lipoprotein involved in colanic acid biosynthesis

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,494,950	0	T	C	100.0%	299.5 / NA	85	Y85H (TAT→CAT)	ypdI	putative lipoprotein involved in colanic acid biosynthesis
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/45); total (40/45)

AAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCGA  >  NC_000913/2494814‑2495080

aaaaaCATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCAt                                                                                                                                  <  2:1530252/139‑1 (MQ=255)

          gCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATc                                                                                                                        <  2:1038358/139‑1 (MQ=255)

            gATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCt                                                                                                                      >  2:72971/1‑139 (MQ=255)

                  gacCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGa                                                                                                                <  1:1543682/139‑1 (MQ=255)

                               aCAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATC‑TATTCATCCTGTGCGATAACGTCTTTcaca                                                                                                  >  1:145124/1‑139 (MQ=255)

                                   aaCTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATgg                                                                                               <  1:984501/139‑1 (MQ=255)

                                   aaCTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATgg                                                                                               >  2:119485/1‑139 (MQ=255)

                                      ttCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATaac                                                                                                            >  2:200993/1‑121 (MQ=255)

                                      ttCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATaac                                                                                                            <  1:200993/123‑3 (MQ=255)

                                      ttCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            >  1:569958/1‑139 (MQ=255)

                                      ttCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            >  2:1450966/1‑139 (MQ=255)

                                        cAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGt                                                                                          >  1:314677/1‑139 (MQ=255)

                                        cAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATC‑TATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTg                                                                                         <  2:145124/139‑1 (MQ=255)

                                         aGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTg                                                                                         <  1:1450966/139‑1 (MQ=255)

                                          gCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGa                                                                                        <  1:72971/139‑1 (MQ=255)

                                          gCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGa                                                                                        <  1:584475/139‑1 (MQ=255)

                                           ccATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGaa                                                                                       <  2:1292889/139‑1 (MQ=255)

                                                acaGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATc                                                                                  <  1:902798/139‑1 (MQ=255)

                                                    gCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCtg                                                                                                                     >  1:1321023/1‑100 (MQ=255)

                                                    gCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCtg                                                                                                                     <  2:1321023/100‑1 (MQ=255)

                                                    gCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGt                                                                              >  1:557395/1‑139 (MQ=255)

                                                     cGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTc                                                                             <  2:557395/139‑1 (MQ=255)

                                                       aTTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            <  1:1507297/122‑1 (MQ=255)

                                                       aTTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            >  2:1507297/1‑122 (MQ=255)

                                                        ttttGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctga                                                                          >  2:847598/1‑139 (MQ=255)

                                                        ttttGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctga                                                                          <  2:569958/139‑1 (MQ=255)

                                                         tttGTTTAAGATGAGAGACGATGCGCCACCAATAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATCCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctgat                                                                         >  2:1424175/1‑139 (MQ=255)

                                                         tttGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctgat                                                                         >  1:789274/1‑139 (MQ=255)

                                                          ttGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctgatg                                                                        >  1:354861/1‑139 (MQ=255)

                                                              ttAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCCGTGCGATAACGTCTTTCACATGGCAGGTGAACAATc                                                                                  <  2:1091145/125‑1 (MQ=255)

                                                              ttAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCCGTGCGATAACGTCTTTCACATGGCAGGTGAACAATc                                                                                  >  1:1091145/1‑125 (MQ=255)

                                                                  gATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgtg                                                                >  2:354073/1‑139 (MQ=255)

                                                                       gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCCTTTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAaca                                                            >  1:940451/1‑139 (MQ=255)

                                                                       gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAacac                                                           <  2:459656/139‑1 (MQ=255)

                                                                       gagaAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAacac                                                           >  1:8551/1‑139 (MQ=255)

                                                                            gaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              >  1:717002/1‑83 (MQ=255)

                                                                            gaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              <  2:717002/83‑1 (MQ=255)

                                                                            gaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGcc                                                      >  1:1032948/1‑139 (MQ=255)

                                                                            gaTGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGcc                                                      <  1:354073/139‑1 (MQ=255)

                                                                             atgggcCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGccc                                                     >  1:935367/5‑139 (MQ=255)

                                                                                    accaTTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACACAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAg                                              <  1:977616/139‑1 (MQ=255)

                                                                                    accaTTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATc                                                                                  >  1:599301/1‑103 (MQ=255)

                                                                                    accaTTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATc                                                                                  <  2:599301/103‑1 (MQ=255)

                                                                                    accaTTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAg                                              <  1:847598/139‑1 (MQ=255)

                                                                                           aaCCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCt                                       >  1:885712/1‑139 (MQ=255)

                                                                                             ccTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGa                                     <  1:119485/139‑1 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGTGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAac                                                             <  2:1576087/112‑1 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGTGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAac                                                             >  1:1576087/1‑112 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTa                                                                                                                              <  2:1446649/47‑1 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTa                                                                                                                              >  1:1446649/1‑47 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            <  2:1565718/81‑1 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            >  1:1565718/1‑81 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctg                                                                           <  1:1712364/98‑1 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctg                                                                           >  2:1712364/1‑98 (MQ=255)

                                                                                                cacaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGAccc                                  >  1:824155/1‑139 (MQ=255)

                                                                                                 acaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              >  2:1282888/1‑62 (MQ=255)

                                                                                                 acaGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              <  1:1282888/62‑1 (MQ=255)

                                                                                                  caGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCat                                >  2:862455/1‑138 (MQ=255)

                                                                                                      agaaATGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTAcc                            <  2:1403152/139‑1 (MQ=255)

                                                                                                         aaTGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGcc                         <  2:8551/139‑1 (MQ=255)

                                                                                                          aTGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCa                                                                                                                          <  1:105292/41‑1 (MQ=255)

                                                                                                          aTGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCa                                                                                                                          >  2:105292/1‑41 (MQ=255)

                                                                                                          aTGCCGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATAGCAGGTGAACAATCATGTctgatg                                                                        <  1:1219750/91‑1 (MQ=255)

                                                                                                          aTGACGCCCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTctgatg                                                                        >  2:1219750/1‑91 (MQ=255)

                                                                                                           ttccgccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCatta                              <  2:1069935/130‑4 (MQ=255)

                                                                                                           tGCCGCCCCC‑TTTTCCGACAAAGGCGAGTCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACGCATTa                              >  1:1069935/1‑132 (MQ=255)

                                                                                                             ccgccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              <  2:265709/50‑1 (MQ=255)

                                                                                                             ccgccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATa                                                                                                              >  1:265709/1‑50 (MQ=255)

                                                                                                              cgccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCa                    <  2:314677/139‑1 (MQ=255)

                                                                                                              cgccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCa                    <  1:1491491/139‑1 (MQ=255)

                                                                                                               gccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCAt                   >  2:1211481/1‑139 (MQ=255)

                                                                                                               gccCCC‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCAt                   >  1:957516/1‑139 (MQ=255)

                                                                                                                ccccc‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATa                  <  1:862455/139‑1 (MQ=255)

                                                                                                                  ccc‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCa                    >  2:388015/1‑135 (MQ=255)

                                                                                                                  ccc‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCa                    <  1:388015/135‑1 (MQ=255)

                                                                                                                   cctttttCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATAcc                <  2:940451/136‑1 (MQ=255)

                                                                                                                   cc‑TTTTCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATAccc               <  2:789274/139‑1 (MQ=255)

                                                                                                                         tCCGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATACCccacca          <  2:824155/139‑1 (MQ=255)

                                                                                                                           cGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATACCCCACCATa        <  1:1677256/139‑1 (MQ=255)

                                                                                                                           cGACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATACCCCACCATa        >  1:1642059/1‑139 (MQ=255)

                                                                                                                            gACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            >  2:868116/1‑54 (MQ=38)

                                                                                                                            gACAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAg                                                                                            <  1:868116/54‑1 (MQ=39)

                                                                                                                             aCAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgtg                                                                <  2:655717/81‑1 (MQ=255)

                                                                                                                             aCAAAGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGAtgtg                                                                >  1:655717/1‑81 (MQ=255)

                                                                                                                                 aGGCGAATCATCTTATTCATCCTGTGCGATAACGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCATTACCGCCTGCCATACCCCACCATAAAGCGa  <  1:368637/139‑1 (MQ=255)

AAAAACATCAGCGATGACGACCACACACTCTACAAAACTTCAGCCATCACAGGCGATTTTGTTTAAGATGAGAGAAGATGCGCCACCATTAAACCTCACAGAAGAAATGCCGCCCCC‑TTTTCCGACAAAGGCGAATTATCTTATTCATCCTGTGCGATAGCGTCTTTCACATGGCAGGTGAACAATCATGTCTGATGCTGATGTGAACACCTGCCCAAATGAGCCATCCTGACCCACTACCGCCTGCCATACCCCACCATAAAGCGA  >  NC_000913/2494814‑2495080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A