Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I1 R1 757 76.1 3598070 93.4% 3360597 108.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,389,043 G→A A28A (GCC→GCT)  aaeA ← p‑hydroxybenzoic acid efflux system component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,389,0430GA100.0% 238.8 / NA 74A28A (GCC→GCT) aaeAp‑hydroxybenzoic acid efflux system component
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (37/37);  total (37/37)

TTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATAAAACA  >  NC_000913/3388915‑3389165
                                                                                                                                |                                                                                                                          
tttttCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTaaaaa                                                                                                                  >  2:994422/1‑139 (MQ=255)
tttttCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTaaaaa                                                                                                                  >  1:1611951/1‑139 (MQ=255)
      aCCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGa                                                                                                            >  2:1049014/1‑139 (MQ=255)
        cAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          <  1:52053/139‑1 (MQ=255)
        cAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          <  2:626103/139‑1 (MQ=255)
             ggTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAgg                                                                                                      >  2:1448850/1‑138 (MQ=255)
             ggTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAgg                                                                                                      <  1:1448850/138‑1 (MQ=255)
             ggTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGc                                                                                                     <  1:1049014/139‑1 (MQ=255)
                 aTCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGa                                                                                                 <  1:1346755/139‑1 (MQ=255)
                      gAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGAc                                                                                            <  1:1437073/139‑1 (MQ=255)
                        aCATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGc                                                                                                     >  1:1578200/1‑128 (MQ=255)
                        aCATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGc                                                                                                     <  2:1578200/128‑1 (MQ=255)
                         cATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGc                                                                                                     <  2:1353383/127‑1 (MQ=255)
                         cATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGc                                                                                                     >  1:1353383/1‑127 (MQ=255)
                            tCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGAt                                                                                                           >  1:501376/1‑118 (MQ=255)
                            tCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGAt                                                                                                           <  2:501376/118‑1 (MQ=255)
                             cACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACg                                                                                     <  2:364821/139‑1 (MQ=255)
                             cACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACg                                                                                     <  1:994422/139‑1 (MQ=255)
                                   ggTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGTGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGAATAATACGAcctgg                                                                               >  1:1188010/1‑136 (MQ=255)
                                   ggTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          <  1:995219/112‑1 (MQ=255)
                                   ggTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          >  2:995219/1‑112 (MQ=255)
                                   ggTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          >  2:1337560/1‑112 (MQ=255)
                                   ggTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATg                                                                                                          <  1:1337560/112‑1 (MQ=255)
                                    gTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGa                                                                              >  2:266378/1‑139 (MQ=255)
                                    gTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGa                                                                              >  1:330483/1‑139 (MQ=255)
                                        tGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGc                                                                          >  2:1694388/1‑139 (MQ=255)
                                        tGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGc                                                                          >  2:638085/1‑139 (MQ=255)
                                        tGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGc                                                                          >  2:1055311/1‑139 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGaa                                                                                                <  2:1605115/112‑1 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGaa                                                                                                >  1:1605115/1‑112 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGAc                                                                                            <  1:1393467/116‑1 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGAc                                                                                            >  2:1393467/1‑116 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTAc                                                                     >  2:781756/1‑139 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTAc                                                                     >  1:953879/1‑139 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTAc                                                                     >  2:1472321/1‑139 (MQ=255)
                                             ccAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTAc                                                                     >  1:1688957/1‑139 (MQ=255)
                                              cAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACg                                                                    >  2:1751772/1‑139 (MQ=255)
                                                     gTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAt                                                             <  1:1472321/139‑1 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAg                                                                                                       <  1:30012/96‑1 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAg                                                                                                       >  2:30012/1‑96 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGa                                                                                                 >  1:1181031/1‑102 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGa                                                                                                 <  2:1181031/102‑1 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAtt                                                            <  1:434021/139‑1 (MQ=255)
                                                      tCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAtt                                                            >  2:1406387/1‑139 (MQ=255)
                                                       ccGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAttt                                                           <  2:1611951/139‑1 (MQ=255)
                                                          gcgcGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCt                                                        <  1:781756/139‑1 (MQ=255)
                                                                tCGCAACGACGTCTGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAttt                                                           >  1:1203945/1‑130 (MQ=255)
                                                                tCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAttt                                                           <  2:1203945/130‑1 (MQ=255)
                                                                           tCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       <  2:953879/139‑1 (MQ=255)
                                                                           tCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       <  2:1688957/139‑1 (MQ=255)
                                                                                       cgcgcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACg                           <  1:1694388/139‑1 (MQ=255)
                                                                                         cgcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGaa                         >  1:177153/1‑139 (MQ=255)
                                                                                         cgcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGaa                         <  1:1406387/139‑1 (MQ=255)
                                                                                         cgcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGaa                         <  2:177153/139‑1 (MQ=255)
                                                                                         cgcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGaa                         <  1:1751772/139‑1 (MQ=255)
                                                                                          gcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       >  2:1465770/1‑124 (MQ=255)
                                                                                          gcgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       <  1:1465770/124‑1 (MQ=255)
                                                                                           cgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTg                                                                                                               >  1:1077723/1‑51 (MQ=255)
                                                                                           cgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTg                                                                                                               <  2:1077723/51‑1 (MQ=255)
                                                                                           cgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAttt                                                           >  2:1612932/1‑103 (MQ=255)
                                                                                           cgTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAAttt                                                           <  1:1612932/103‑1 (MQ=255)
                                                                                               aCGCGTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGTAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTcg                   <  2:1188010/139‑1 (MQ=255)
                                                                                                cgcgTCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTcgc                  >  1:1708381/1‑139 (MQ=255)
                                                                                                    tCCAGGGGGATTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGata              <  2:330483/139‑1 (MQ=255)
                                                                                                             aTTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGt                                                                                >  2:48411/1‑64 (MQ=255)
                                                                                                             aTTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGt                                                                                <  1:48411/64‑1 (MQ=255)
                                                                                                             aTTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATaaa     >  2:1064620/1‑139 (MQ=255)
                                                                                                             aTTCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATaaa     >  2:630331/1‑139 (MQ=255)
                                                                                                              ttCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATaaaa    >  2:652529/1‑139 (MQ=255)
                                                                                                               tCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGa                                                                                                         <  1:1361878/37‑1 (MQ=255)
                                                                                                               tCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGa                                                                                                         >  2:1361878/1‑37 (MQ=255)
                                                                                                               tCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       >  2:1082247/1‑103 (MQ=255)
                                                                                                               tCGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACtt                                       <  1:1082247/103‑1 (MQ=255)
                                                                                                                cGGTGTAATAGACCCAAGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATAAAACa  <  1:638085/139‑1 (MQ=255)
                                                                                                                                |                                                                                                                          
TTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTAATACGACCGTGATGGCCGTACGGGAGAATTTTCTTATTAGTGTTTTCACTTCAACCTCAAACGAACAGTCGCGATATCAAATAAAACA  >  NC_000913/3388915‑3389165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A