Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I2 R1
|
760 |
52.7 |
2744488 |
90.2% |
2475528 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,682,095 |
A→G |
intergenic (‑65/‑64) |
ydgC ← / → rstA |
GlpM family inner membrane protein/response regulator of RstAB two‑component system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,682,095 | 0 | A | G | 100.0%
| 175.1
/ NA
| 50 | intergenic (‑65/‑64) | ydgC/rstA | GlpM family inner membrane protein/response regulator of RstAB two‑component system |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/23); total (27/23) |
TTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCAC > NC_000913/1681967‑1682204
|
ttGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATag < 1:696931/139‑1 (MQ=255)
aaTCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAg > 1:367217/1‑139 (MQ=255)
aCAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAgc < 2:149662/135‑1 (MQ=255)
aCAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAgc > 1:149662/1‑135 (MQ=255)
cACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGcgcg < 1:1149622/134‑1 (MQ=255)
cACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGcgcg > 2:1149622/1‑134 (MQ=255)
ccAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATtgtg > 2:992274/1‑139 (MQ=255)
gAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTtat > 1:673018/1‑139 (MQ=255)
aGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTtata > 2:583175/1‑139 (MQ=255)
ggCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTAc < 2:673018/139‑1 (MQ=255)
tGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑a < 1:992274/139‑1 (MQ=255)
aTTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AAt < 1:241186/139‑1 (MQ=255)
cAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTCTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGAG‑ATTGTTAt > 1:934288/1‑139 (MQ=255)
ccccATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGaa > 1:500421/1‑139 (MQ=255)
ccATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAaca > 2:1275697/1‑139 (MQ=255)
cATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATtgtg < 2:1169777/105‑1 (MQ=255)
cATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATtgtg > 1:1169777/1‑105 (MQ=255)
aTCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACt > 2:300518/1‑139 (MQ=255)
tCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTa > 2:1029898/1‑139 (MQ=255)
cTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTAt < 2:367217/139‑1 (MQ=255)
tACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTAt < 1:300518/139‑1 (MQ=255)
tAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGcgcg > 2:438335/1‑82 (MQ=255)
tAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGcgcg < 1:438335/82‑1 (MQ=255)
aaCACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATc > 1:845925/1‑104 (MQ=255)
aaCACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATc < 2:845925/104‑1 (MQ=255)
aaCACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTAt > 1:1293785/1‑119 (MQ=255)
aaCACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTAt < 2:1293785/119‑1 (MQ=255)
ccATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTTTA‑CTTCCGTGAAAGGTAATAAAACCAATGGTATTTGTGGAGgttga > 2:173246/1‑139 (MQ=255)
cATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAgatgat > 1:263665/1‑139 (MQ=255)
aaCAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCg < 2:500421/139‑1 (MQ=255)
aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑a < 1:197486/97‑1 (MQ=255)
aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑a > 2:197486/1‑97 (MQ=255)
aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAg > 2:129917/1‑139 (MQ=255)
gTCATCAGTAGAATACCTGATGAAAACTTGTATAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGt > 1:928027/1‑139 (MQ=255)
catcaGTAGAATACCTCATGAAAACTTGTTTAGAAGCGATTGATCGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACTGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCg > 1:340169/1‑139 (MQ=255)
tcaGTAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGt < 1:129917/139‑1 (MQ=255)
tcaGTAGAATACCTGATGAAAACTTGTATAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGt < 2:928027/139‑1 (MQ=255)
tAGAATACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCAc < 2:550700/139‑1 (MQ=255)
aaTACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATg < 2:592324/88‑1 (MQ=255)
aaTACCTGATGAAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATg > 1:592324/1‑88 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATtgtg > 1:1120992/1‑57 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATtgtg < 2:1120992/57‑1 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGa > 2:119019/1‑58 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGa < 1:119019/58‑1 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGAc > 2:808309/1‑59 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGAc < 1:808309/59‑1 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGt < 2:1057835/125‑1 (MQ=255)
gatgaAAACTTGTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGt > 1:1057835/1‑125 (MQ=255)
gTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATc < 2:229411/84‑1 (MQ=255)
gTTTAGAAGCGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATc > 1:229411/1‑84 (MQ=255)
|
TTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTG‑AATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCAC > NC_000913/1681967‑1682204
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
