Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I2 R1 760 52.7 2744488 90.2% 2475528 105.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,151 T→C L538P (CTG→CCG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,1510TC100.0% 457.2 / NA 126L538P (CTG→CCG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (63/63);  total (63/63)

Only 100 of 132 total aligned reads displayed.

GAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACA  >  NC_000913/2073025‑2073286
                                                                                                                              |                                                                                                                                       
gAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCgg                                                                                                                             >  1:892728/1‑139 (MQ=255)
     ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTTACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:922906/139‑1 (MQ=255)
     ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  1:940341/139‑1 (MQ=255)
          actcactGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACtgtg                                                                                                                   <  1:1037220/139‑1 (MQ=255)
               ctGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              <  1:591777/139‑1 (MQ=255)
                 gTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  2:1271135/1‑127 (MQ=255)
                 gTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  1:1271135/127‑1 (MQ=255)
                  tCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  1:116333/1‑126 (MQ=255)
                  tCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:116333/126‑1 (MQ=255)
                      cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:152644/122‑1 (MQ=255)
                      cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGcc                                                                                                       >  1:835541/1‑139 (MQ=255)
                        gcaccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  1:852737/2‑120 (MQ=255)
                        acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTTAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:852737/120‑1 (MQ=255)
                        acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAt                                                                                                     <  1:1146322/139‑1 (MQ=255)
                        acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAt                                                                                                     <  1:655922/139‑1 (MQ=255)
                          accacACTCACCCAGAAAGCCGTCAACCTGAATGACGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTg                                                                                                   >  2:582871/1‑139 (MQ=255)
                            cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc                                                                                                 >  1:773467/1‑139 (MQ=255)
                            cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc                                                                                                 >  1:289098/1‑139 (MQ=255)
                                 tCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc                                                                                            <  1:1143441/139‑1 (MQ=255)
                                   aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa                                                                                          >  2:40390/1‑139 (MQ=255)
                                   aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa                                                                                          >  1:1232008/1‑139 (MQ=255)
                                   aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa                                                                                          >  2:298470/1‑139 (MQ=255)
                                    cctaGAAAGCCCTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACAGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc                                                                                            >  1:792558/4‑136 (MQ=255)
                                    cccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc                                                                                            <  2:792558/136‑1 (MQ=255)
                                           aGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCAct                                                                                  >  1:1346259/1‑139 (MQ=255)
                                             ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                >  2:505224/1‑139 (MQ=255)
                                                tCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  1:519396/1‑96 (MQ=255)
                                                tCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:519396/96‑1 (MQ=255)
                                                   aCCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                          >  2:124747/1‑139 (MQ=255)
                                                       gaatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                      <  2:1346259/139‑1 (MQ=255)
                                                       gaatgaaGACACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                      <  1:674820/139‑1 (MQ=255)
                                                           gaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTACCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCa                                                                  <  1:192412/139‑1 (MQ=255)
                                                             aGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                <  1:505224/139‑1 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTg                                                                                                                <  1:278154/90‑1 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTg                                                                                                                >  2:278154/1‑90 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              >  2:130987/1‑92 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              <  1:130987/92‑1 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                                                                                                    >  2:1046181/1‑102 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                               <  1:900277/139‑1 (MQ=255)
                                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                               >  1:857499/1‑139 (MQ=255)
                                                                 acgctgacgctgAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                            <  2:773467/139‑1 (MQ=255)
                                                                 acgctgacgctgAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                            <  1:703948/139‑1 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTg                                                                                                                >  1:869655/1‑86 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTg                                                                                                                <  2:869655/86‑1 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              <  2:29161/88‑1 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              >  1:29161/1‑88 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                                                                                                    <  2:170471/98‑1 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                                                                                                    >  1:170471/1‑98 (MQ=255)
                                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                           >  2:1357744/1‑139 (MQ=255)
                                                                   gctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAat                                                          <  1:582871/139‑1 (MQ=255)
                                                                         gctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcccc                                                    <  2:416939/139‑1 (MQ=255)
                                                                                 aCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  1:1203012/63‑1 (MQ=255)
                                                                                 aCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  2:1203012/1‑63 (MQ=255)
                                                                                  cAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGcc                                           >  1:1100395/1‑139 (MQ=255)
                                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                          <  1:1251229/139‑1 (MQ=255)
                                                                                    gTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCAc                                         >  2:1063026/1‑139 (MQ=255)
                                                                                     tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  1:1015198/1‑59 (MQ=255)
                                                                                     tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                                                                                              >  1:427524/1‑85 (MQ=255)
                                                                                     tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                                                                                              <  2:427524/85‑1 (MQ=255)
                                                                                     tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACACCACg                                        <  2:1294586/139‑1 (MQ=255)
                                                                                       ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                      >  2:61244/1‑107 (MQ=255)
                                                                                        cGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTg                                     <  1:249507/139‑1 (MQ=255)
                                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        >  1:441908/1‑52 (MQ=255)
                                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:441908/52‑1 (MQ=255)
                                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                 <  1:16632/139‑1 (MQ=255)
                                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                 >  1:1062225/1‑139 (MQ=255)
                                                                                             ccacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                      >  2:1007109/1‑101 (MQ=255)
                                                                                             ccacGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                      <  1:1007109/101‑1 (MQ=255)
                                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGGCCGGCAGCACTGTGCTGAACGGTGCCATTGCCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg                              <  1:124603/139‑1 (MQ=255)
                                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  1:780911/49‑1 (MQ=255)
                                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcc                                                      >  1:186142/1‑115 (MQ=255)
                                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcc                                                      <  2:186142/115‑1 (MQ=255)
                                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg                              <  1:437171/139‑1 (MQ=255)
                                                                                                cGGATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGgcagca                                                                                                                        <  2:809002/48‑1 (MQ=255)
                                                                                                  gATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              <  2:314794/56‑1 (MQ=255)
                                                                                                  gATGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGaa                                                                                                              >  1:314794/1‑56 (MQ=255)
                                                                                                   aTGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggt                             <  1:546349/136‑1 (MQ=255)
                                                                                                   aTGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggt                             >  2:546349/1‑136 (MQ=255)
                                                                                                    tGTCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGCCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGgtggtg                         >  2:349876/1‑139 (MQ=255)
                                                                                                      tCATTGCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                       <  1:349876/139‑1 (MQ=255)
                                                                                                           gCTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGAcc                  >  2:1030316/1‑139 (MQ=255)
                                                                                                            cTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                     <  1:421137/87‑1 (MQ=255)
                                                                                                            cTCAGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                     >  2:421137/1‑87 (MQ=255)
                                                                                                               aGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                <  1:402290/89‑1 (MQ=255)
                                                                                                               aGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCAcc                                                                >  2:402290/1‑89 (MQ=255)
                                                                                                               aGCGCGGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAg              >  1:413007/1‑139 (MQ=255)
                                                                                                                 cgcgGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                     <  2:1104317/82‑1 (MQ=255)
                                                                                                                 cgcgGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc            >  2:695365/1‑139 (MQ=255)
                                                                                                                 cgcgGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc            >  2:789657/1‑139 (MQ=255)
                                                                                                                 cgcgGTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc            >  1:1359645/1‑139 (MQ=255)
                                                                                                                    ggTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATg         >  1:1225636/1‑139 (MQ=255)
                                                                                                                    ggTACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGCCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATg         <  1:1063026/139‑1 (MQ=255)
                                                                                                                      tACAGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                          <  2:753295/104‑1 (MQ=255)
                                                                                                                         aGCCCCGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGa    <  2:1225636/139‑1 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGt                                                                                      >  1:1021505/1‑55 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGt                                                                                      <  2:1021505/55‑1 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCAc                                         <  2:215964/100‑1 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCAc                                         >  1:215964/1‑100 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACa  >  2:1010269/1‑139 (MQ=255)
                                                                                                                           ccccGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACa  >  1:976957/1‑139 (MQ=255)
                                                                                                                              |                                                                                                                                       
GAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACA  >  NC_000913/2073025‑2073286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A