Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I2 R1
|
757 |
38.1 |
1607544 |
96.5% |
1551279 |
117.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,394,870 |
(G)5→6 |
coding (805/1548 nt) |
nnr → |
bifunctional NAD(P)H‑hydrate repair enzyme, C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,394,865 | 1 | . | G | 100.0%
| 76.1
/ NA
| 23 | A267G (GCG→GGG) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme, C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (8/15); total (8/15) |
GTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑G‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATG > NC_000913/4394727‑4394998
|
gTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCacggcacggc > 1:55656/1‑139 (MQ=255)
gcAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑g‑gggggct < 1:621346/139‑4 (MQ=255)
gAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑g‑gggggc < 1:119449/124‑3 (MQ=255)
gAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑g‑gggggc > 2:119449/1‑122 (MQ=255)
gTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGTCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCt < 1:486720/139‑1 (MQ=255)
agcagAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgc < 2:55656/139‑1 (MQ=255)
agAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctgg < 2:138609/139‑1 (MQ=255)
aacaacTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggtg < 2:784847/139‑1 (MQ=255)
aacaacTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCgtgctggtg < 1:792675/139‑1 (MQ=255)
tcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGt > 1:508030/1‑139 (MQ=255)
tcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGt < 2:508030/139‑1 (MQ=255)
tcACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGt > 2:111132/1‑139 (MQ=255)
cACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATGACGTGCTGGTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTc < 1:311672/139‑1 (MQ=255)
aCTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTcc < 1:111132/139‑1 (MQ=255)
ggCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑g‑gggggct > 1:430873/1‑84 (MQ=255)
ggCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑g‑gggggct < 2:430873/87‑4 (MQ=255)
cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTcc > 1:189596/1‑125 (MQ=255)
cgTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTcc < 2:189596/125‑1 (MQ=255)
cgTCGCCCGAATTCGCATAAAGGCGATCATGGGCGGCGGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGTAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGc < 2:648049/139‑1 (MQ=255)
cATAAAGGCGATCACGGGCGTCTGGTAATTATCGGTGGCGAGCACCGCACTGC‑GCGGTGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGATAACATTgcg < 1:420680/139‑1 (MQ=255)
aGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCgct > 1:190843/1‑139 (MQ=255)
ggcTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGAc < 2:558239/139‑1 (MQ=255)
gcTGGTAATTATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGAcc < 2:226552/139‑1 (MQ=255)
ttATCGGTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGa < 2:238425/139‑1 (MQ=255)
gTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc < 1:740533/121‑1 (MQ=255)
gTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCAc > 2:740533/1‑121 (MQ=255)
gTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCACTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGa < 1:731089/95‑1 (MQ=255)
gTGGCGATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCACTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGa > 2:731089/1‑95 (MQ=255)
gATCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGaa > 2:11038/1‑139 (MQ=255)
tCACGGCACGGCGG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACt > 1:141714/1‑139 (MQ=255)
acggcgG‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATg < 2:553057/139‑1 (MQ=255)
|
GTTGGCTGGCAGGTCAGGAGACGAAAATTCAGCGGTTTTCAGCAGAACAACTTTCTCACTGGCTAAAACCGCGTCGCCCGACTTCGCATAAAGGCGATCACGGGCGGCTGGTAATTATCGGTGGCGATCACGGCACGGC‑G‑GGGGCTATTCGTATGACGGGGGAAGCGGCGCTGCGTGCTGGTGCTGGTTTAGTCCGAGTACTGACCCGCAGTGAAAACATTGCGCCGCTGCTGACTGCACGACCGGAATTGATGGTGCATGAACTGACGATG > NC_000913/4394727‑4394998
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
